Prupe.5G049200_v2.0.a1

SNF2 domain-containing protein CLASSY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0001072
Physical Location & Seq
Reverse (-)
5198361 .. 5204141
5781 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G049200.1

Sequence Viewer

Length: 3681 bp
ATGGACTATAACGCACCTGTAGCAAAGAGGACGCGGTTAAGTGAAGAGAAATACTGGAAGGAGTTATGGGAGAAAAGGGCTGGGAAACAAAAACTCCGTGATGGGTCTGATAAGAAGGGGAAATCACGTAAAGGGTCCAATGTATGGGATTGTGTCTCTGTGGATGACTCTGAGGAGAATGAGGAAGTCACTGTCAGTCTATCCACGGGAGTCAAGGACAAGAAAAAGGGTGGGAAAAGAAAATCTGCTGAGGGGTCTAAGAAACAGAGGTCTGGTTGTGATGATTCTGATGAGGGTGACGATCCCAGTGTTGAAATCATCAGTGAAAGTTCATTTGGAAAGCAAGACAATGAGTCTCTGGGTTTTGATAGTGTTGAGAGTGCAGGATCAAATGGAAAGAAGTCTAACTCTGGTGCCGTGGACATGGAGAATTTTTTTCCAGTTGAAGTGGAGGATAGTGATGATGAGGTGGTGTATTTGGGTGAAGAGAAAGTAGGAGGTTTTGGTTGTTTGAGTTCAGAGAGGAGTGATGCCTGTGAGGATGCTGCTTCTGATGGCGACGCTGAGGATGCTGCTTCTGATGGCGACGCTGAGGATGCTGCTTCTGATGGCTCAGATGAATCTTGGAAGAGTAGTTCTAGGGAGGATTCTATTTTTCATGCCTCAGATGAATCAGATGATGAGGCTTTTGAACCAGAAAACTCAGAAAGTTCTGTATTTTCTGAGTCGTTGAATTCATGCGGTGAAGAGGGGCATGATGATGAAAGAGAGGTTACCAAGAGAAGTGGGAAACCAAGAAAGGGGAAAAATGTTGAGGGTGATGTTGAGGTGAAGAAGGGGCAGGACATTGATGCTAGTGAGATTGCAAAAGGAAGTGGGAAAGCAGAAAAGGGGAAAAGTGTTGAGATTGGTGTGAGGAGAAAGAGAAGGGTTGGGTTGGATATGTCAGTTGATGCAGATGATGACATTGATAGCAACAAAGATGATCCTATTCATTCTGCTCAAGAGTTTAATAGTGTGGCAAAACGAACTCGTTCACGAGTTAGTCCAAGAAGTGAAAAGAAGAGAATAGAATCTGTAACTGTAAATGATAATGAGGATTCTTCTTCTGGGCATGATAATGACAATGAGGATGTTGATGACGCCAATTGCAGTGGTCCAAGAACTAGGTGCCACGAAAAGAAAACAGGGTCTGATGATGATAGAAGAAATTATGAAAGTGACAAGACCTATGGTGGTAGTTCAGAAACTGAGCGTAGTAAATGGAACGATGTCCACGGAGTGTGCAAGAAAAATAAAAGGGATATCGGGAATCTTACTAACAGACGGTCCATGTGGGCAAAGGAGGATTGCAATGTTTTAAAGATTCTTGTAGATTCCATTTATGAGAAGGGAGAAGGGACACTGAAAGGGTCAGTTTCCTTTGGAGATGAAGGCCGTAAAGATGAAAGAAATCCACCAGAATCTGAGATGACAACTCTTCCACTTAAGTTCAGTTTTGGAGAGCAGTCAACTGTACCAAAGAAGTCAGAGTGTGATCCAGAAGAAAAAGAACTATGGGACGACCTTGAATTTGCTCTCAGAGCTTCTGAGATAGATTCCTCTGATTCCAATGTGGTTGAAAGTCAAGATTCACTCCCTATTGCTGATGAAGTTGAAACAGTAGCTAGCCTCTGTAGGCGAGGGGTTCATCAGCTTATACTTGATGAAGAGATTGGACTCAGATGCAAGTTTTGCTCATATTTAGATCAGGAGATCAAGTATATTTTACCAGACTTCCTTGACTGCCCTTATGGAAGATTTGGCACAAGAGGCTCCGAAACAGACAACCGGTCTATCTTTGATGAGCTTCAATCTCATGCTTCTGATTCTGATCGCCATTCTGGCTATAATTCTCATCCTCATGTTGACGGCACAGTGTGGGACTTAATTCCTGGTGTTAAAAGTAGTATGTATCCCCATCAGTGTGAAGGTTTTGAGTTTATCTGGAACCATATAGCCGGTGGCATTCATCTTGACAAGTTGAAAAGGCCAAGTAGTGTTGGTGGGAATGGATGCATCATATCACATGCTCCTGGAACAGGCAAAACTCGCCTGACCATTGTCTTTCTCCAGACATACATGAAGTTATTCCCAGAATGCAGGCCGCTTTTGATTGCTCCTCGTAGCATGCTCCTTACGTGGGAAGAGGAGTTTAAAAAATGGAAGCTTGACATTCCATTTCACAATCTTAACAACTGGGAGTTATCTGGCAAAGAAAATCAAACAGCTGTAAATTATGTGATGCAAGCTCAACGCAGGAAAAGTGTCAACATAGAAAGCAGACGAATGCTGAAGTTGTATTCCTGGAGAAAGAAGAGAAGCATCCTGGGGATTAGTTACCGGCTGTTTGAGCAGCTTTCTGGAGCACAGAAAACTGGCTCAGTTGACGAAATGGGGAAAATCCTTCTCGAGTTTCCTGGTCTTGTAGTGTTTGATGAAGGACACACTCCTCGGAATGATCAAAGTCATATGTGGAAGGCTTTGTCAGAAATCAAAACAAAAAGGCGCATTCTTCTCTCTGGAACTCCGTTTCAGAATAATTTTCAGGAGCTCTTCAATACCATTTGCCTCGTGAGGCCAACTTTTGCAGCCTCGATTGAGTCTACTAAATTCAGTAGAGATCTTCCCAGAAACCGAGGCCGGAAAAGCAATGGAGAGAAATGGAAATGGACTTCTCTGGCCAGCAGTAGCGGAAAAGTTGTTGATGACAAAGAAAAACATGCTACAGAGGTCAAAGCTCAGATTGCGCCGTTTGTCCACGTCTACAAAGGTTCTGTGCTGCAAGATAGTCTTCCCGGGTTAAGGAACTCAGTTGTTGTTTTACACCCAACCCAGCTACAGGAGAGGTTTCATAAGAGAATTCAAGTGGTGAAGGAACTGTTTCGATATGAAAACCTAGAGGCTTTAATATCTTTTCATCCTTCCCTCTTGCTTAAGGAAGATGCATTTTCTGCTGACCAGGGGAGGTTACAAGAGCTTAAATTAAATCCTGATGCTGGAGTGAAGGCAAAATTTGTGATGGAACTCATCCGACTCAGTGATGCTTTGAAAGAAAAAGTTCTTGTTTTCAGTCAGTACATTGATCCCTTAAACCTTACAAGGGATCTTCTGAAATCTCAATTTCAGTGGACTGAAGGGGAAGAGGTGCTGTATATGGATGGAAAAAGTGATATGAAGCAGCGTCAATCCTCAATGAAGGTTTTCAACGATCCATCTAGCAAAGCCAAGGTATTACTAGCTTCAACTAAAGCATGTTCTGAAGGCATAAGCCTTGTTGGAGCTTCCAGGGTTGTGTTGCTGGATGTCACATGGAATCCATCTGTGGAGAGGCAAGCAATATCCCGTGCCTACAGGCTGGGACAGAAGAAGGTTGTGTTTGTCTACCATCTCCTCATGGACGGAACTAACGAGGAGCACAAATACAGTCGCCAAGTTGACAAGAGTCGTTTGTCTGAGTTGGTGTTTTCTGATTCAGACAAGAAGAAGGTTCTTGAGAAGGAAATCCGAGCCACAGTTTCTGAGGATAAAATCTTGCAAGAGATGGCTCAGCACGGGAAACTGAAGCACCTATTTAAAAGCATAGCTTTACTGCATGAAGACATATACTTTGAGCAGCTAGGCCTGTCAACTTTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

1227

Amino Acids

137.78

Weight (kDa)

5.5

Isoelectric Point (pI)

48.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 413, 1170
AccB7I CCANNNNNTGG 1 cut(s) 144
AccI GTMKAC 3 cut(s) 2645, 2805, 3423
AccII CGCG 1 cut(s) 34
AciI CCGC 4 cut(s) 34, 741, 2147, 2733
AclWI GGATC 7 cut(s) 296, 394, 980, 1532, 3119, 3153, 3245
AcoI YGGCCR 1 cut(s) 2721
AcsI RAATTY 6 cut(s) 430, 733, 1571, 2651, 2901, 3053
AcuI CTGAAG 4 cut(s) 2354, 3195, 3321, 3623
AcyI GRCGYC 1 cut(s) 1143
AdeI CACNNNGTG 2 cut(s) 1282, 1920
AfaI GTAC 2 cut(s) 1518, 3119
AfiI CCNNNNNNNGG 8 cut(s) 144, 800, 2081, 2182, 2844, 2881, 3038, 3142
AflII CTTAAG 2 cut(s) 1487, 2975
AgeI ACCGGT 1 cut(s) 1830
AhdI GACNNNNNGTC 2 cut(s) 352, 1831
AjiI CACGTC 1 cut(s) 2803
AjnI CCWGG 7 cut(s) 1933, 2074, 2345, 2367, 2458, 3000, 3326
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AloI GAACNNNNNNTCC 2 cut(s) 619, 651
Alw21I GWGCWC 3 cut(s) 2410, 2595, 3459
Alw26I GTCTC 2 cut(s) 160, 360
AlwI GGATC 7 cut(s) 296, 394, 980, 1532, 3119, 3153, 3245
AlwNI CAGNNNCTG 4 cut(s) 1193, 1250, 1466, 3560
Ama87I CYCGRG 2 cut(s) 2450, 2837
AoxI GGCC 7 cut(s) 1435, 2030, 2144, 2618, 2680, 2721, 3661
ApeKI GCWGC 8 cut(s) 545, 572, 599, 2395, 2630, 2821, 3220, 3655
ApoI RAATTY 6 cut(s) 430, 733, 1571, 2651, 2901, 3053
ArsI GACNNNNNNTTYG 4 cut(s) 1556, 1588, 3632, 3664
AsiGI ACCGGT 1 cut(s) 1830
Asp700I GAANNNNTTC 5 cut(s) 1033, 2129, 2922, 3099, 3242
AspLEI GCGC 2 cut(s) 2550, 2791
AspS9I GGNCC 3 cut(s) 135, 1157, 1329
AsuC2I CCSGG 2 cut(s) 2838, 2839
AsuHPI GGTGA 6 cut(s) 308, 494, 755, 830, 841, 2923
AsuNHI GCTAGC 1 cut(s) 1667
AvaI CYCGRG 2 cut(s) 2450, 2837
AvaII GGWCC 3 cut(s) 135, 1157, 1329
BalI TGGCCA 1 cut(s) 2723
BanI GGYRCC 2 cut(s) 413, 1170
BanII GRGCYC 1 cut(s) 2595
BauI CACGAG 2 cut(s) 1038, 2612
BbsI GAAGAC 2 cut(s) 2825, 3645
Bbv12I GWGCWC 3 cut(s) 2410, 2595, 3459
BbvCI CCTCAGC 3 cut(s) 249, 564, 591
BbvI GCAGC 8 cut(s) 532, 559, 586, 2407, 2642, 2808, 3232, 3667
BceAI ACGGC 4 cut(s) 401, 1422, 1927, 2776
BciT130I CCWGG 7 cut(s) 1935, 2076, 2347, 2369, 2460, 3002, 3328
BciVI GTATCC 1 cut(s) 1965
BclI TGATCA 1 cut(s) 2500
BcnI CCSGG 2 cut(s) 2838, 2839
BcoDI GTCTC 2 cut(s) 160, 360
BfaI CTAG 8 cut(s) 639, 855, 1167, 1668, 2939, 3258, 3278, 3659
BfmI CTRYAG 5 cut(s) 18, 1675, 2766, 2879, 3391
BfrI CTTAAG 2 cut(s) 1487, 2975
BfuI GTATCC 1 cut(s) 1965
BglI GCCNNNNNGGC 1 cut(s) 1884
BglII AGATCT 1 cut(s) 2662
BisI GCNGC 9 cut(s) 546, 573, 600, 2147, 2396, 2631, 2822, 3221, 3656
BlpI GCTNAGC 1 cut(s) 3588
BlsI GCNGC 9 cut(s) 547, 574, 601, 2148, 2397, 2632, 2823, 3222, 3657
Bme1390I CCNGG 9 cut(s) 1935, 2076, 2347, 2369, 2460, 2838, 2839, 3002, 3328
Bme18I GGWCC 3 cut(s) 135, 1157, 1329
BmeRI GACNNNNNGTC 2 cut(s) 352, 1831
BmeT110I CYCGRG 2 cut(s) 2450, 2837
BmgBI CACGTC 1 cut(s) 2803
BmgT120I GGNCC 3 cut(s) 135, 1157, 1329
BmiI GGNNCC 5 cut(s) 136, 415, 1172, 1816, 1991
BmrFI CCNGG 9 cut(s) 1935, 2076, 2347, 2369, 2460, 2838, 2839, 3002, 3328
BmrI ACTGGG 2 cut(s) 300, 2248
BmtI GCTAGC 1 cut(s) 1671
BmuI ACTGGG 2 cut(s) 300, 2248
BoxI GACNNNNGTC 2 cut(s) 2102, 3483
BpiI GAAGAC 2 cut(s) 2825, 3645
BpmI CTGGAG 4 cut(s) 2096, 2368, 2424, 3060
Bpu10I CCTNAGC 3 cut(s) 249, 564, 591
Bpu1102I GCTNAGC 1 cut(s) 3588
BpuEI CTTGAG 2 cut(s) 987, 3554
BpuMI CCSGG 2 cut(s) 2838, 2839
BsaAI YACGTR 2 cut(s) 128, 2181
BsaBI GATNNNNATC 1 cut(s) 1872
BsaHI GRCGYC 1 cut(s) 1143
BsaWI WCCGGW 1 cut(s) 1830
BsaXI ACNNNNNCTCC 4 cut(s) 78, 108, 1745, 1775
Bsc4I CCNNNNNNNGG 8 cut(s) 144, 800, 2081, 2182, 2844, 2881, 3038, 3142
Bse118I RCCGGY 3 cut(s) 1830, 2000, 2382
Bse1I ACTGG 5 cut(s) 59, 306, 440, 2243, 2422
Bse3DI GCAATG 2 cut(s) 1360, 2698
Bse8I GATNNNNATC 1 cut(s) 1872
BseBI CCWGG 7 cut(s) 1935, 2076, 2347, 2369, 2460, 3002, 3328
BseJI GATNNNNATC 1 cut(s) 1872
BseLI CCNNNNNNNGG 8 cut(s) 144, 800, 2081, 2182, 2844, 2881, 3038, 3142
BseMI GCAATG 2 cut(s) 1360, 2698
BseNI ACTGG 5 cut(s) 59, 306, 440, 2243, 2422
BseRI GAGGAG 8 cut(s) 188, 538, 931, 2151, 2204, 2481, 3422, 3467
BseXI GCAGC 8 cut(s) 532, 559, 586, 2407, 2642, 2808, 3232, 3667
BseYI CCCAGC 3 cut(s) 80, 2874, 3397
BsgI GTGCAG 1 cut(s) 402
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 7 cut(s) 1437, 2032, 2146, 2620, 2682, 2723, 3663
BshNI GGYRCC 2 cut(s) 413, 1170
BshTI ACCGGT 1 cut(s) 1830
BsiHKAI GWGCWC 3 cut(s) 2410, 2595, 3459
BsiHKCI CYCGRG 2 cut(s) 2450, 2837
BsiSI CCGG 5 cut(s) 1831, 2001, 2383, 2683, 2838
BslFI GGGAC 4 cut(s) 1414, 1574, 1937, 3414
BslI CCNNNNNNNGG 8 cut(s) 144, 800, 2081, 2182, 2844, 2881, 3038, 3142
BsmAI GTCTC 2 cut(s) 160, 360
BsmFI GGGAC 4 cut(s) 1414, 1574, 1937, 3414
BsmI GAATGC 4 cut(s) 2007, 2144, 2334, 2550
BsnI GGCC 7 cut(s) 1437, 2032, 2146, 2620, 2682, 2723, 3663
BsoBI CYCGRG 2 cut(s) 2450, 2837
Bsp1286I GDGCHC 3 cut(s) 2410, 2595, 3459
Bsp1720I GCTNAGC 1 cut(s) 3588
BspACI CCGC 4 cut(s) 34, 741, 2147, 2733
BspANI GGCC 7 cut(s) 1437, 2032, 2146, 2620, 2682, 2723, 3663
BspFNI CGCG 1 cut(s) 34
BspLI GGNNCC 5 cut(s) 136, 415, 1172, 1816, 1991
BspOI GCTAGC 1 cut(s) 1671
BspPI GGATC 7 cut(s) 296, 394, 980, 1532, 3119, 3153, 3245
BspQI GCTCTTC 1 cut(s) 2600
BspT107I GGYRCC 2 cut(s) 413, 1170
BspTI CTTAAG 2 cut(s) 1487, 2975
BsrDI GCAATG 2 cut(s) 1360, 2698
BsrFI RCCGGY 3 cut(s) 1830, 2000, 2382
BsrI ACTGG 5 cut(s) 59, 306, 440, 2243, 2422
BssAI RCCGGY 3 cut(s) 1830, 2000, 2382
BssNI GRCGYC 1 cut(s) 1143
BssSI CACGAG 2 cut(s) 1038, 2612
BssT1I CCWWGG 1 cut(s) 3267
Bst2BI CACGAG 2 cut(s) 1038, 2612
Bst2UI CCWGG 7 cut(s) 1935, 2076, 2347, 2369, 2460, 3002, 3328
Bst4CI ACNGT 9 cut(s) 193, 1084, 1329, 1516, 1663, 1918, 2922, 3467, 3556
BstACI GRCGYC 1 cut(s) 1143
BstAFI CTTAAG 2 cut(s) 1487, 2975
BstAPI GCANNNNNTGC 2 cut(s) 1734, 2993
BstBAI YACGTR 2 cut(s) 128, 2181
BstC8I GCNNGC 6 cut(s) 1669, 2144, 2171, 2289, 2725, 3375
BstDSI CCRYGG 3 cut(s) 204, 417, 1276
BstEII GGTNACC 1 cut(s) 772
BstENI CCTNNNNNAGG 1 cut(s) 2079
BstFNI CGCG 1 cut(s) 34
BstHHI GCGC 2 cut(s) 2550, 2791
BstMAI GTCTC 2 cut(s) 160, 360
BstNI CCWGG 7 cut(s) 1935, 2076, 2347, 2369, 2460, 3002, 3328
BstNSI RCATGY 4 cut(s) 2072, 2173, 2765, 3297
BstPAI GACNNNNGTC 2 cut(s) 2102, 3483
BstPI GGTNACC 1 cut(s) 772
BstSCI CCNGG 9 cut(s) 1933, 2074, 2345, 2367, 2458, 2836, 2837, 3000, 3326
BstSFI CTRYAG 5 cut(s) 18, 1675, 2766, 2879, 3391
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 8 cut(s) 532, 559, 586, 2407, 2642, 2808, 3232, 3667
BstV2I GAAGAC 2 cut(s) 2825, 3645
BstX2I RGATCY 2 cut(s) 2662, 3145
BstYI RGATCY 2 cut(s) 2662, 3145
BsuI GTATCC 1 cut(s) 1965
BsuRI GGCC 7 cut(s) 1437, 2032, 2146, 2620, 2682, 2723, 3663
BtgI CCRYGG 3 cut(s) 204, 417, 1276
BtrI CACGTC 1 cut(s) 2803
BtsI GCAGTG 1 cut(s) 1159
BtsIMutI CAGTG 9 cut(s) 189, 313, 328, 1159, 1403, 1923, 1970, 3085, 3173
Cac8I GCNNGC 6 cut(s) 1669, 2144, 2171, 2289, 2725, 3375
CaiI CAGNNNCTG 4 cut(s) 1193, 1250, 1466, 3560
CfoI GCGC 2 cut(s) 2550, 2791
Cfr10I RCCGGY 3 cut(s) 1830, 2000, 2382
Cfr13I GGNCC 3 cut(s) 135, 1157, 1329
Cfr9I CCCGGG 1 cut(s) 2837
CseI GACGC 5 cut(s) 40, 569, 596, 1151, 3212
Csp6I GTAC 2 cut(s) 1517, 3118
CspAI ACCGGT 1 cut(s) 1830
CspCI CAANNNNNGTGG 6 cut(s) 766, 801, 1135, 1170, 3149, 3184
CviQI GTAC 2 cut(s) 1517, 3118
DraI TTTAAA 3 cut(s) 1362, 2197, 3616
DraIII CACNNNGTG 2 cut(s) 1282, 1920
DriI GACNNNNNGTC 2 cut(s) 352, 1831
EaeI YGGCCR 1 cut(s) 2721
Eam1105I GACNNNNNGTC 2 cut(s) 352, 1831
Ecl136II GAGCTC 1 cut(s) 2593
Eco130I CCWWGG 1 cut(s) 3267
Eco147I AGGCCT 1 cut(s) 3663
Eco24I GRGCYC 1 cut(s) 2595
Eco32I GATATC 1 cut(s) 1306
Eco47I GGWCC 3 cut(s) 135, 1157, 1329
Eco53kI GAGCTC 1 cut(s) 2593
Eco57I CTGAAG 4 cut(s) 2354, 3195, 3321, 3623
Eco88I CYCGRG 2 cut(s) 2450, 2837
Eco91I GGTNACC 1 cut(s) 772
EcoICRI GAGCTC 1 cut(s) 2593
EcoNI CCTNNNNNAGG 1 cut(s) 2079
EcoO65I GGTNACC 1 cut(s) 772
EcoRI GAATTC 2 cut(s) 733, 2901
EcoRII CCWGG 7 cut(s) 1933, 2074, 2345, 2367, 2458, 3000, 3326
EcoRV GATATC 1 cut(s) 1306
EcoT14I CCWWGG 1 cut(s) 3267
EcoT22I ATGCAT 2 cut(s) 2060, 2989
EcoT38I GRGCYC 1 cut(s) 2595
ErhI CCWWGG 1 cut(s) 3267
FalI AAGNNNNNCTT 4 cut(s) 2817, 2849, 3610, 3642
FaqI GGGAC 4 cut(s) 1414, 1574, 1937, 3414
FauNDI CATATG 1 cut(s) 2511
FbaI TGATCA 1 cut(s) 2500
FblI GTMKAC 3 cut(s) 2645, 2805, 3423
Fnu4HI GCNGC 9 cut(s) 546, 573, 600, 2147, 2396, 2631, 2822, 3221, 3656
FriOI GRGCYC 1 cut(s) 2595
Fsp4HI GCNGC 9 cut(s) 546, 573, 600, 2147, 2396, 2631, 2822, 3221, 3656
FspBI CTAG 8 cut(s) 639, 855, 1167, 1668, 2939, 3258, 3278, 3659
GlaI GCGC 2 cut(s) 2549, 2790
GluI GCNGC 9 cut(s) 546, 573, 600, 2147, 2396, 2631, 2822, 3221, 3656
GsaI CCCAGC 3 cut(s) 84, 2878, 3401
GsuI CTGGAG 4 cut(s) 2096, 2368, 2424, 3060
HaeIII GGCC 7 cut(s) 1437, 2032, 2146, 2620, 2682, 2723, 3663
HapII CCGG 5 cut(s) 1831, 2001, 2383, 2683, 2838
HgaI GACGC 5 cut(s) 40, 569, 596, 1151, 3212
HhaI GCGC 2 cut(s) 2550, 2791
Hin1I GRCGYC 1 cut(s) 1143
Hin6I GCGC 2 cut(s) 2548, 2789
HinP1I GCGC 2 cut(s) 2548, 2789
HincII GTYRAC 6 cut(s) 1512, 1909, 2311, 2428, 3478, 3669
HindII GTYRAC 6 cut(s) 1512, 1909, 2311, 2428, 3478, 3669
HindIII AAGCTT 1 cut(s) 2207
HpaII CCGG 5 cut(s) 1831, 2001, 2383, 2683, 2838
HphI GGTGA 6 cut(s) 308, 494, 755, 830, 841, 2923
Hpy99I CGWCG 2 cut(s) 563, 590
HpyCH4III ACNGT 9 cut(s) 193, 1084, 1329, 1516, 1663, 1918, 2922, 3467, 3556
HpyCH4IV ACGT 3 cut(s) 127, 2180, 2802
HpySE526I ACGT 3 cut(s) 127, 2180, 2802
Hsp92I GRCGYC 1 cut(s) 1143
HspAI GCGC 2 cut(s) 2548, 2789
Ksp22I TGATCA 1 cut(s) 2500
LguI GCTCTTC 1 cut(s) 2600
LmnI GCTCC 8 cut(s) 1820, 2077, 2164, 2178, 2405, 2590, 3320, 3454
Lsp1109I GCAGC 8 cut(s) 532, 559, 586, 2407, 2642, 2808, 3232, 3667
MaeI CTAG 8 cut(s) 639, 855, 1167, 1668, 2939, 3258, 3278, 3659
MaeII ACGT 3 cut(s) 127, 2180, 2802
MaeIII GTNAC 8 cut(s) 187, 296, 772, 1078, 1220, 2378, 3009, 3346
MfeI CAATTG 1 cut(s) 1147
MflI RGATCY 2 cut(s) 2662, 3145
MhlI GDGCHC 3 cut(s) 2410, 2595, 3459
MlsI TGGCCA 1 cut(s) 2723
MluNI TGGCCA 1 cut(s) 2723
MlyI GAGTC 8 cut(s) 161, 219, 362, 734, 1713, 2651, 3069, 3493
MmeI TCCRAC 3 cut(s) 918, 3097, 3298
Mox20I TGGCCA 1 cut(s) 2723
Mph1103I ATGCAT 2 cut(s) 2060, 2989
MroXI GAANNNNTTC 5 cut(s) 1033, 2129, 2922, 3099, 3242
MscI TGGCCA 1 cut(s) 2723
MslI CAYNNNNRTG 4 cut(s) 759, 1119, 1902, 1965
Msp20I TGGCCA 1 cut(s) 2723
MspA1I CMGCKG 1 cut(s) 2270
MspCI CTTAAG 2 cut(s) 1487, 2975
MspI CCGG 5 cut(s) 1831, 2001, 2383, 2683, 2838
MspR9I CCNGG 9 cut(s) 1935, 2076, 2347, 2369, 2460, 2838, 2839, 3002, 3328
MunI CAATTG 1 cut(s) 1147
Mva1269I GAATGC 4 cut(s) 2007, 2144, 2334, 2550
MvaI CCWGG 7 cut(s) 1935, 2076, 2347, 2369, 2460, 3002, 3328
MvnI CGCG 1 cut(s) 34
NciI CCSGG 2 cut(s) 2838, 2839
NdeI CATATG 1 cut(s) 2511
NheI GCTAGC 1 cut(s) 1667
NlaIV GGNNCC 5 cut(s) 136, 415, 1172, 1816, 1991
NmuCI GTSAC 4 cut(s) 187, 296, 1220, 3346
NsiI ATGCAT 2 cut(s) 2060, 2989
NspI RCATGY 4 cut(s) 2072, 2173, 2765, 3297
PaeI GCATGC 1 cut(s) 2173
PaeR7I CTCGAG 1 cut(s) 2450
PceI AGGCCT 1 cut(s) 3663
PciSI GCTCTTC 1 cut(s) 2600
PcsI WCGNNNNNNNCGW 1 cut(s) 3447
PctI GAATGC 4 cut(s) 2007, 2144, 2334, 2550
PdmI GAANNNNTTC 5 cut(s) 1033, 2129, 2922, 3099, 3242
PflMI CCANNNNNTGG 1 cut(s) 144
PfoI TCCNGGA 2 cut(s) 2074, 2345
PinAI ACCGGT 1 cut(s) 1830
PkrI GCNGC 9 cut(s) 547, 574, 601, 2148, 2397, 2632, 2823, 3222, 3657
PleI GAGTC 8 cut(s) 161, 218, 361, 733, 1713, 2650, 3069, 3492
PpsI GAGTC 8 cut(s) 161, 218, 361, 733, 1713, 2650, 3069, 3492
Ppu21I YACGTR 2 cut(s) 128, 2181
PshAI GACNNNNGTC 2 cut(s) 2102, 3483
Psp124BI GAGCTC 1 cut(s) 2595
Psp6I CCWGG 7 cut(s) 1933, 2074, 2345, 2367, 2458, 3000, 3326
PspEI GGTNACC 1 cut(s) 772
PspFI CCCAGC 3 cut(s) 80, 2874, 3397
PspGI CCWGG 7 cut(s) 1933, 2074, 2345, 2367, 2458, 3000, 3326
PspN4I GGNNCC 5 cut(s) 136, 415, 1172, 1816, 1991
PspPI GGNCC 3 cut(s) 135, 1157, 1329
PstNI CAGNNNCTG 4 cut(s) 1193, 1250, 1466, 3560
PsuI RGATCY 2 cut(s) 2662, 3145
PvuII CAGCTG 1 cut(s) 2270
RsaI GTAC 2 cut(s) 1518, 3119
RsaNI GTAC 2 cut(s) 1517, 3118
RseI CAYNNNNRTG 4 cut(s) 759, 1119, 1902, 1965
SacI GAGCTC 1 cut(s) 2595
SapI GCTCTTC 1 cut(s) 2600
SatI GCNGC 9 cut(s) 546, 573, 600, 2147, 2396, 2631, 2822, 3221, 3656
Sau96I GGNCC 3 cut(s) 135, 1157, 1329
SchI GAGTC 8 cut(s) 161, 219, 362, 734, 1713, 2651, 3069, 3493
ScrFI CCNGG 9 cut(s) 1935, 2076, 2347, 2369, 2460, 2838, 2839, 3002, 3328
SduI GDGCHC 3 cut(s) 2410, 2595, 3459
SfcI CTRYAG 5 cut(s) 18, 1675, 2766, 2879, 3391
Sfr274I CTCGAG 1 cut(s) 2450
SinI GGWCC 3 cut(s) 135, 1157, 1329
SlaI CTCGAG 1 cut(s) 2450
SmaI CCCGGG 1 cut(s) 2839
SmiMI CAYNNNNRTG 4 cut(s) 759, 1119, 1902, 1965
SmlI CTYRAG 5 cut(s) 1002, 1487, 2450, 2975, 3533
SmoI CTYRAG 5 cut(s) 1002, 1487, 2450, 2975, 3533
SphI GCATGC 1 cut(s) 2173
SseBI AGGCCT 1 cut(s) 3663
SsiI CCGC 4 cut(s) 34, 741, 2147, 2733
SspMI CTAG 8 cut(s) 639, 855, 1167, 1668, 2939, 3258, 3278, 3659
SstI GAGCTC 1 cut(s) 2595
StuI AGGCCT 1 cut(s) 3663
StyD4I CCNGG 9 cut(s) 1933, 2074, 2345, 2367, 2458, 2836, 2837, 3000, 3326
StyI CCWWGG 1 cut(s) 3267
TaaI ACNGT 9 cut(s) 193, 1084, 1329, 1516, 1663, 1918, 2922, 3467, 3556
TaiI ACGT 3 cut(s) 130, 2183, 2805
TaqI TCGA 3 cut(s) 2451, 2636, 2926
TatI WGTACW 1 cut(s) 3117
TauI GCSGC 1 cut(s) 2149
TscAI CASTG 9 cut(s) 196, 313, 328, 1159, 1410, 1923, 1970, 3085, 3173
TseFI GTSAC 4 cut(s) 187, 296, 1220, 3346
TseI GCWGC 8 cut(s) 545, 572, 599, 2395, 2630, 2821, 3220, 3655
Tsp45I GTSAC 4 cut(s) 187, 296, 1220, 3346
TspGWI ACGGA 4 cut(s) 86, 1293, 2559, 3456
TspMI CCCGGG 1 cut(s) 2837
TspRI CASTG 9 cut(s) 196, 313, 328, 1159, 1410, 1923, 1970, 3085, 3173
Van91I CCANNNNNTGG 1 cut(s) 144
Vha464I CTTAAG 2 cut(s) 1487, 2975
VpaK11BI GGWCC 3 cut(s) 135, 1157, 1329
XagI CCTNNNNNAGG 1 cut(s) 2079
XapI RAATTY 6 cut(s) 430, 733, 1571, 2651, 2901, 3053
XceI RCATGY 4 cut(s) 2072, 2173, 2765, 3297
XcmI CCANNNNNNNNNTGG 1 cut(s) 2000
XhoI CTCGAG 1 cut(s) 2450
XmaI CCCGGG 1 cut(s) 2837
XmiI GTMKAC 3 cut(s) 2645, 2805, 3423
XmnI GAANNNNTTC 5 cut(s) 1033, 2129, 2922, 3099, 3242
XspI CTAG 8 cut(s) 639, 855, 1167, 1668, 2939, 3258, 3278, 3659
Zsp2I ATGCAT 2 cut(s) 2060, 2989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.