SNF2 domain-containing protein CLASSY
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 3 cut(s) | 597, 2893, 3191 |
| AccB1I | GGYRCC | 2 cut(s) | 1408, 3344 |
| AccIII | TCCGGA | 1 cut(s) | 1813 |
| AciI | CCGC | 4 cut(s) | 224, 1127, 3148, 4106 |
| AclI | AACGTT | 1 cut(s) | 7 |
| AclWI | GGATC | 3 cut(s) | 2437, 3674, 3800 |
| AcoI | YGGCCR | 3 cut(s) | 604, 864, 1047 |
| AcsI | RAATTY | 6 cut(s) | 1175, 1556, 2492, 2638, 2993, 3225 |
| AcuI | CTGAAG | 7 cut(s) | 1656, 1761, 2133, 2357, 2442, 2867, 3531 |
| AdeI | CACNNNGTG | 1 cut(s) | 2433 |
| AfaI | GTAC | 7 cut(s) | 1669, 2292, 2468, 2633, 2680, 3106, 3891 |
| AfeI | AGCGCT | 1 cut(s) | 3518 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 111, 2452, 2594, 2695, 3593, 4105 |
| AjnI | CCWGG | 7 cut(s) | 75, 1974, 2446, 2587, 2852, 2998, 3367 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 918, 950, 1044, 1076 |
| Alw21I | GWGCWC | 1 cut(s) | 3135 |
| Alw26I | GTCTC | 2 cut(s) | 755, 1787 |
| AlwI | GGATC | 3 cut(s) | 2437, 3674, 3800 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1679, 2060 |
| Ama87I | CYCGRG | 2 cut(s) | 752, 3939 |
| Aor13HI | TCCGGA | 1 cut(s) | 1813 |
| Aor51HI | AGCGCT | 1 cut(s) | 3518 |
| AoxI | GGCC | 7 cut(s) | 604, 864, 1047, 1599, 2657, 3158, 3265 |
| ApeKI | GCWGC | 4 cut(s) | 624, 1492, 2780, 4141 |
| ApoI | RAATTY | 6 cut(s) | 1175, 1556, 2492, 2638, 2993, 3225 |
| AseI | ATTAAT | 3 cut(s) | 777, 1005, 1767 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1464, 2985, 3452 |
| AspLEI | GCGC | 2 cut(s) | 3090, 3519 |
| AspS9I | GGNCC | 4 cut(s) | 69, 2658, 3168, 3220 |
| AsuC2I | CCSGG | 1 cut(s) | 2169 |
| AsuHPI | GGTGA | 7 cut(s) | 49, 977, 1852, 2573, 3166, 3548, 3563 |
| AsuII | TTCGAA | 3 cut(s) | 947, 2961, 4070 |
| AvaI | CYCGRG | 2 cut(s) | 752, 3939 |
| AvaII | GGWCC | 3 cut(s) | 69, 3168, 3220 |
| BaeGI | GKGCMC | 3 cut(s) | 1403, 1411, 3027 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 702, 735, 2233, 2266 |
| BalI | TGGCCA | 1 cut(s) | 606 |
| BanI | GGYRCC | 2 cut(s) | 1408, 3344 |
| BanII | GRGCYC | 3 cut(s) | 1720, 2917, 3135 |
| BauI | CACGAG | 1 cut(s) | 1402 |
| BbsI | GAAGAC | 3 cut(s) | 1788, 2352, 3964 |
| Bbv12I | GWGCWC | 1 cut(s) | 3135 |
| BbvI | GCAGC | 4 cut(s) | 636, 1504, 2792, 4153 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1700, 1734, 3014, 3048 |
| BciT130I | CCWGG | 7 cut(s) | 77, 1976, 2448, 2589, 2854, 3000, 3369 |
| BciVI | GTATCC | 2 cut(s) | 1629, 2234 |
| BclI | TGATCA | 1 cut(s) | 139 |
| BcnI | CCSGG | 1 cut(s) | 2169 |
| BcoDI | GTCTC | 2 cut(s) | 755, 1787 |
| BfaI | CTAG | 3 cut(s) | 111, 1263, 2072 |
| BfmI | CTRYAG | 2 cut(s) | 1431, 3395 |
| BfoI | RGCGCY | 1 cut(s) | 3520 |
| BfuAI | ACCTGC | 3 cut(s) | 597, 2893, 3191 |
| BfuI | GTATCC | 2 cut(s) | 1629, 2234 |
| BisI | GCNGC | 4 cut(s) | 625, 1493, 2781, 4142 |
| BlsI | GCNGC | 4 cut(s) | 626, 1494, 2782, 4143 |
| Bme1390I | CCNGG | 8 cut(s) | 77, 1976, 2169, 2448, 2589, 2854, 3000, 3369 |
| Bme18I | GGWCC | 3 cut(s) | 69, 3168, 3220 |
| BmeT110I | CYCGRG | 2 cut(s) | 752, 3939 |
| BmgT120I | GGNCC | 4 cut(s) | 69, 2658, 3168, 3220 |
| BmiI | GGNNCC | 6 cut(s) | 1410, 2125, 2660, 2914, 3346, 3911 |
| BmrFI | CCNGG | 8 cut(s) | 77, 1976, 2169, 2448, 2589, 2854, 3000, 3369 |
| BmrI | ACTGGG | 5 cut(s) | 888, 1127, 1311, 2772, 3565 |
| BmsI | GCATC | 7 cut(s) | 1606, 2278, 2558, 2880, 3757, 4048, 4075 |
| BmuI | ACTGGG | 5 cut(s) | 888, 1127, 1311, 2772, 3565 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3045 |
| BpiI | GAAGAC | 3 cut(s) | 1788, 2352, 3964 |
| BpmI | CTGGAG | 2 cut(s) | 307, 2521 |
| Bpu14I | TTCGAA | 3 cut(s) | 947, 2961, 4070 |
| BpuEI | CTTGAG | 2 cut(s) | 168, 4139 |
| BpuMI | CCSGG | 1 cut(s) | 2169 |
| Bsa29I | ATCGAT | 1 cut(s) | 822 |
| BsaAI | YACGTR | 1 cut(s) | 2678 |
| BsaJI | CCNNGG | 7 cut(s) | 1974, 2203, 2446, 2853, 3187, 3297, 3368 |
| BsaWI | WCCGGW | 2 cut(s) | 1813, 2352 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 111, 2452, 2594, 2695, 3593, 4105 |
| Bse118I | RCCGGY | 1 cut(s) | 4023 |
| Bse3DI | GCAATG | 5 cut(s) | 1894, 3043, 3215, 3259, 3834 |
| BseAI | TCCGGA | 1 cut(s) | 1813 |
| BseBI | CCWGG | 7 cut(s) | 77, 1976, 2448, 2589, 2854, 3000, 3369 |
| BseCI | ATCGAT | 1 cut(s) | 822 |
| BseDI | CCNNGG | 7 cut(s) | 1974, 2203, 2446, 2853, 3187, 3297, 3368 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 111, 2452, 2594, 2695, 3593, 4105 |
| BseMI | GCAATG | 5 cut(s) | 1894, 3043, 3215, 3259, 3834 |
| BseMII | CTCAG | 5 cut(s) | 1497, 2052, 2198, 3396, 3728 |
| BseSI | GKGCMC | 3 cut(s) | 1403, 1411, 3027 |
| BseXI | GCAGC | 4 cut(s) | 636, 1504, 2792, 4153 |
| BseYI | CCCAGC | 3 cut(s) | 2324, 3257, 3995 |
| BsgI | GTGCAG | 3 cut(s) | 1730, 2025, 4160 |
| Bsh1285I | CGRYCG | 1 cut(s) | 4110 |
| BshFI | GGCC | 7 cut(s) | 606, 866, 1049, 1601, 2659, 3160, 3267 |
| BshNI | GGYRCC | 2 cut(s) | 1408, 3344 |
| BshVI | ATCGAT | 1 cut(s) | 822 |
| BsiEI | CGRYCG | 1 cut(s) | 4110 |
| BsiHKAI | GWGCWC | 1 cut(s) | 3135 |
| BsiHKCI | CYCGRG | 2 cut(s) | 752, 3939 |
| BsiSI | CCGG | 4 cut(s) | 1814, 2169, 2353, 4024 |
| BslFI | GGGAC | 4 cut(s) | 1669, 2450, 3713, 3969 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 111, 2452, 2594, 2695, 3593, 4105 |
| BsmAI | GTCTC | 2 cut(s) | 755, 1787 |
| BsmFI | GGGAC | 4 cut(s) | 1669, 2450, 3713, 3969 |
| BsmI | GAATGC | 5 cut(s) | 592, 691, 1361, 1585, 3064 |
| BsnI | GGCC | 7 cut(s) | 606, 866, 1049, 1601, 2659, 3160, 3267 |
| BsoBI | CYCGRG | 2 cut(s) | 752, 3939 |
| Bsp119I | TTCGAA | 3 cut(s) | 947, 2961, 4070 |
| Bsp1286I | GDGCHC | 6 cut(s) | 1403, 1411, 1720, 2917, 3027, 3135 |
| Bsp13I | TCCGGA | 1 cut(s) | 1813 |
| BspACI | CCGC | 4 cut(s) | 224, 1127, 3148, 4106 |
| BspANI | GGCC | 7 cut(s) | 606, 866, 1049, 1601, 2659, 3160, 3267 |
| BspCNI | CTCAG | 5 cut(s) | 1498, 2053, 2197, 3395, 3727 |
| BspDI | ATCGAT | 1 cut(s) | 822 |
| BspEI | TCCGGA | 1 cut(s) | 1813 |
| BspHI | TCATGA | 3 cut(s) | 814, 997, 3529 |
| BspLI | GGNNCC | 6 cut(s) | 1410, 2125, 2660, 2914, 3346, 3911 |
| BspMI | ACCTGC | 3 cut(s) | 597, 2893, 3191 |
| BspPI | GGATC | 3 cut(s) | 2437, 3674, 3800 |
| BspQI | GCTCTTC | 1 cut(s) | 3507 |
| BspT104I | TTCGAA | 3 cut(s) | 947, 2961, 4070 |
| BspT107I | GGYRCC | 2 cut(s) | 1408, 3344 |
| BsrDI | GCAATG | 5 cut(s) | 1894, 3043, 3215, 3259, 3834 |
| BsrFI | RCCGGY | 1 cut(s) | 4023 |
| BssAI | RCCGGY | 1 cut(s) | 4023 |
| BssECI | CCNNGG | 7 cut(s) | 1974, 2203, 2446, 2853, 3187, 3297, 3368 |
| BssSI | CACGAG | 1 cut(s) | 1402 |
| BssT1I | CCWWGG | 3 cut(s) | 2203, 3187, 3297 |
| Bst2BI | CACGAG | 1 cut(s) | 1402 |
| Bst2UI | CCWGG | 7 cut(s) | 77, 1976, 2448, 2589, 2854, 3000, 3369 |
| Bst4CI | ACNGT | 8 cut(s) | 32, 652, 1435, 1821, 1947, 2431, 2895, 3145 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3611 |
| BstBAI | YACGTR | 1 cut(s) | 2678 |
| BstBI | TTCGAA | 3 cut(s) | 947, 2961, 4070 |
| BstC8I | GCNNGC | 7 cut(s) | 1720, 2583, 2657, 2785, 3294, 3930, 4025 |
| BstDEI | CTNAG | 8 cut(s) | 1488, 1506, 1596, 2061, 2184, 2509, 3382, 3714 |
| BstEII | GGTNACC | 1 cut(s) | 1425 |
| BstH2I | RGCGCY | 1 cut(s) | 3520 |
| BstHHI | GCGC | 2 cut(s) | 3090, 3519 |
| BstMAI | GTCTC | 2 cut(s) | 755, 1787 |
| BstMCI | CGRYCG | 1 cut(s) | 4110 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 1445, 3240, 3249, 3361, 3611, 3833 |
| BstNI | CCWGG | 7 cut(s) | 77, 1976, 2448, 2589, 2854, 3000, 3369 |
| BstNSI | RCATGY | 3 cut(s) | 2585, 3335, 3706 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3045 |
| BstPI | GGTNACC | 1 cut(s) | 1425 |
| BstSCI | CCNGG | 8 cut(s) | 75, 1974, 2167, 2446, 2587, 2852, 2998, 3367 |
| BstSFI | CTRYAG | 2 cut(s) | 1431, 3395 |
| BstSLI | GKGCMC | 3 cut(s) | 1403, 1411, 3027 |
| BstV1I | GCAGC | 4 cut(s) | 636, 1504, 2792, 4153 |
| BstV2I | GAAGAC | 3 cut(s) | 1788, 2352, 3964 |
| Bsu15I | ATCGAT | 1 cut(s) | 822 |
| BsuI | GTATCC | 2 cut(s) | 1629, 2234 |
| BsuRI | GGCC | 7 cut(s) | 606, 866, 1049, 1601, 2659, 3160, 3267 |
| BsuTUI | ATCGAT | 1 cut(s) | 822 |
| BtsI | GCAGTG | 1 cut(s) | 1189 |
| BveI | ACCTGC | 3 cut(s) | 597, 2893, 3191 |
| Cac8I | GCNNGC | 7 cut(s) | 1720, 2583, 2657, 2785, 3294, 3930, 4025 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1679, 2060 |
| CciI | TCATGA | 3 cut(s) | 814, 997, 3529 |
| CfoI | GCGC | 2 cut(s) | 3090, 3519 |
| Cfr10I | RCCGGY | 1 cut(s) | 4023 |
| Cfr13I | GGNCC | 4 cut(s) | 69, 2658, 3168, 3220 |
| ClaI | ATCGAT | 1 cut(s) | 822 |
| CseI | GACGC | 1 cut(s) | 1666 |
| Csp6I | GTAC | 7 cut(s) | 1668, 2291, 2467, 2632, 2679, 3105, 3890 |
| CviQI | GTAC | 7 cut(s) | 1668, 2291, 2467, 2632, 2679, 3105, 3890 |
| DdeI | CTNAG | 8 cut(s) | 1488, 1506, 1596, 2061, 2184, 2509, 3382, 3714 |
| DraI | TTTAAA | 1 cut(s) | 3069 |
| DraIII | CACNNNGTG | 1 cut(s) | 2433 |
| EaeI | YGGCCR | 3 cut(s) | 604, 864, 1047 |
| Ecl136II | GAGCTC | 1 cut(s) | 3133 |
| Eco130I | CCWWGG | 3 cut(s) | 2203, 3187, 3297 |
| Eco24I | GRGCYC | 3 cut(s) | 1720, 2917, 3135 |
| Eco32I | GATATC | 1 cut(s) | 820 |
| Eco47I | GGWCC | 3 cut(s) | 69, 3168, 3220 |
| Eco47III | AGCGCT | 1 cut(s) | 3518 |
| Eco53kI | GAGCTC | 1 cut(s) | 3133 |
| Eco57I | CTGAAG | 7 cut(s) | 1656, 1761, 2133, 2357, 2442, 2867, 3531 |
| Eco88I | CYCGRG | 2 cut(s) | 752, 3939 |
| Eco91I | GGTNACC | 1 cut(s) | 1425 |
| EcoICRI | GAGCTC | 1 cut(s) | 3133 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2658 |
| EcoO65I | GGTNACC | 1 cut(s) | 1425 |
| EcoRI | GAATTC | 1 cut(s) | 1175 |
| EcoRII | CCWGG | 7 cut(s) | 75, 1974, 2446, 2587, 2852, 2998, 3367 |
| EcoRV | GATATC | 1 cut(s) | 820 |
| EcoT14I | CCWWGG | 3 cut(s) | 2203, 3187, 3297 |
| EcoT22I | ATGCAT | 1 cut(s) | 2573 |
| EcoT38I | GRGCYC | 3 cut(s) | 1720, 2917, 3135 |
| ErhI | CCWWGG | 3 cut(s) | 2203, 3187, 3297 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 3348, 3380, 3956, 3988 |
| FaqI | GGGAC | 4 cut(s) | 1669, 2450, 3713, 3969 |
| FauI | CCCGC | 1 cut(s) | 1120 |
| FauNDI | CATATG | 5 cut(s) | 93, 1570, 1798, 2190, 2246 |
| FbaI | TGATCA | 1 cut(s) | 139 |
| Fnu4HI | GCNGC | 4 cut(s) | 625, 1493, 2781, 4142 |
| FriOI | GRGCYC | 3 cut(s) | 1720, 2917, 3135 |
| Fsp4HI | GCNGC | 4 cut(s) | 625, 1493, 2781, 4142 |
| FspBI | CTAG | 3 cut(s) | 111, 1263, 2072 |
| GlaI | GCGC | 2 cut(s) | 3089, 3518 |
| GluI | GCNGC | 4 cut(s) | 625, 1493, 2781, 4142 |
| GsaI | CCCAGC | 3 cut(s) | 2328, 3261, 3999 |
| GsuI | CTGGAG | 2 cut(s) | 307, 2521 |
| HaeII | RGCGCY | 1 cut(s) | 3520 |
| HaeIII | GGCC | 7 cut(s) | 606, 866, 1049, 1601, 2659, 3160, 3267 |
| HapII | CCGG | 4 cut(s) | 1814, 2169, 2353, 4024 |
| HgaI | GACGC | 1 cut(s) | 1666 |
| HhaI | GCGC | 2 cut(s) | 3090, 3519 |
| Hin6I | GCGC | 2 cut(s) | 3088, 3517 |
| HinP1I | GCGC | 2 cut(s) | 3088, 3517 |
| HindIII | AAGCTT | 1 cut(s) | 3362 |
| HpaII | CCGG | 4 cut(s) | 1814, 2169, 2353, 4024 |
| HphI | GGTGA | 7 cut(s) | 49, 977, 1852, 2573, 3166, 3548, 3563 |
| Hpy166II | GTNNAC | 2 cut(s) | 1700, 3337 |
| Hpy8I | GTNNAC | 2 cut(s) | 1700, 3337 |
| HpyCH4III | ACNGT | 8 cut(s) | 32, 652, 1435, 1821, 1947, 2431, 2895, 3145 |
| HpyCH4IV | ACGT | 3 cut(s) | 7, 1315, 2677 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 1445, 3240, 3249, 3361, 3611, 3833 |
| HpyF3I | CTNAG | 8 cut(s) | 1488, 1506, 1596, 2061, 2184, 2509, 3382, 3714 |
| HpySE526I | ACGT | 3 cut(s) | 7, 1315, 2677 |
| HspAI | GCGC | 2 cut(s) | 3088, 3517 |
| Kpn2I | TCCGGA | 1 cut(s) | 1813 |
| KroI | GCCGGC | 1 cut(s) | 4023 |
| KroNI | GCCGGC | 1 cut(s) | 4025 |
| Ksp22I | TGATCA | 1 cut(s) | 139 |
| LguI | GCTCTTC | 1 cut(s) | 3507 |
| LmnI | GCTCC | 9 cut(s) | 1846, 1990, 2308, 2677, 2691, 2912, 3130, 3191, 3875 |
| Lsp1109I | GCAGC | 4 cut(s) | 636, 1504, 2792, 4153 |
| LweI | GCATC | 7 cut(s) | 1606, 2278, 2558, 2880, 3757, 4048, 4075 |
| MaeI | CTAG | 3 cut(s) | 111, 1263, 2072 |
| MaeII | ACGT | 3 cut(s) | 7, 1315, 2677 |
| MaeIII | GTNAC | 9 cut(s) | 452, 505, 1425, 1947, 2179, 3047, 3481, 3536, 3551 |
| MhlI | GDGCHC | 6 cut(s) | 1403, 1411, 1720, 2917, 3027, 3135 |
| MlsI | TGGCCA | 1 cut(s) | 606 |
| MluNI | TGGCCA | 1 cut(s) | 606 |
| MlyI | GAGTC | 7 cut(s) | 49, 110, 1253, 2150, 2596, 3055, 3606 |
| MmeI | TCCRAC | 6 cut(s) | 96, 176, 309, 1291, 2517, 3853 |
| Mox20I | TGGCCA | 1 cut(s) | 606 |
| Mph1103I | ATGCAT | 1 cut(s) | 2573 |
| MroI | TCCGGA | 1 cut(s) | 1813 |
| MroNI | GCCGGC | 1 cut(s) | 4023 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1464, 2985, 3452 |
| MscI | TGGCCA | 1 cut(s) | 606 |
| MslI | CAYNNNNRTG | 3 cut(s) | 96, 2478, 3534 |
| Msp20I | TGGCCA | 1 cut(s) | 606 |
| MspI | CCGG | 4 cut(s) | 1814, 2169, 2353, 4024 |
| MspR9I | CCNGG | 8 cut(s) | 77, 1976, 2169, 2448, 2589, 2854, 3000, 3369 |
| Mva1269I | GAATGC | 5 cut(s) | 592, 691, 1361, 1585, 3064 |
| MvaI | CCWGG | 7 cut(s) | 77, 1976, 2448, 2589, 2854, 3000, 3369 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 1445, 3240, 3249, 3361, 3611, 3833 |
| NaeI | GCCGGC | 1 cut(s) | 4025 |
| NciI | CCSGG | 1 cut(s) | 2169 |
| NdeI | CATATG | 5 cut(s) | 93, 1570, 1798, 2190, 2246 |
| NgoMIV | GCCGGC | 1 cut(s) | 4023 |
| NlaIV | GGNNCC | 6 cut(s) | 1410, 2125, 2660, 2914, 3346, 3911 |
| NmeAIII | GCCGAG | 1 cut(s) | 3415 |
| NmuCI | GTSAC | 4 cut(s) | 505, 3047, 3536, 3551 |
| NsiI | ATGCAT | 1 cut(s) | 2573 |
| NspI | RCATGY | 3 cut(s) | 2585, 3335, 3706 |
| NspV | TTCGAA | 3 cut(s) | 947, 2961, 4070 |
| PaeI | GCATGC | 1 cut(s) | 2585 |
| PagI | TCATGA | 3 cut(s) | 814, 997, 3529 |
| PciSI | GCTCTTC | 1 cut(s) | 3507 |
| PctI | GAATGC | 5 cut(s) | 592, 691, 1361, 1585, 3064 |
| PdiI | GCCGGC | 1 cut(s) | 4025 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1464, 2985, 3452 |
| PflFI | GACNNNGTC | 1 cut(s) | 2099 |
| PkrI | GCNGC | 4 cut(s) | 626, 1494, 2782, 4143 |
| PleI | GAGTC | 7 cut(s) | 48, 109, 1252, 2150, 2596, 3054, 3605 |
| PpsI | GAGTC | 7 cut(s) | 48, 109, 1252, 2150, 2596, 3054, 3605 |
| Ppu21I | YACGTR | 1 cut(s) | 2678 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3045 |
| PshBI | ATTAAT | 3 cut(s) | 777, 1005, 1767 |
| Psp124BI | GAGCTC | 1 cut(s) | 3135 |
| Psp1406I | AACGTT | 1 cut(s) | 7 |
| Psp6I | CCWGG | 7 cut(s) | 75, 1974, 2446, 2587, 2852, 2998, 3367 |
| PspEI | GGTNACC | 1 cut(s) | 1425 |
| PspFI | CCCAGC | 3 cut(s) | 2324, 3257, 3995 |
| PspGI | CCWGG | 7 cut(s) | 75, 1974, 2446, 2587, 2852, 2998, 3367 |
| PspN4I | GGNNCC | 6 cut(s) | 1410, 2125, 2660, 2914, 3346, 3911 |
| PspPI | GGNCC | 4 cut(s) | 69, 2658, 3168, 3220 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1679, 2060 |
| PsyI | GACNNNGTC | 1 cut(s) | 2099 |
| RsaI | GTAC | 7 cut(s) | 1669, 2292, 2468, 2633, 2680, 3106, 3891 |
| RsaNI | GTAC | 7 cut(s) | 1668, 2291, 2467, 2632, 2679, 3105, 3890 |
| RseI | CAYNNNNRTG | 3 cut(s) | 96, 2478, 3534 |
| SacI | GAGCTC | 1 cut(s) | 3135 |
| SapI | GCTCTTC | 1 cut(s) | 3507 |
| SatI | GCNGC | 4 cut(s) | 625, 1493, 2781, 4142 |
| Sau96I | GGNCC | 4 cut(s) | 69, 2658, 3168, 3220 |
| SchI | GAGTC | 7 cut(s) | 49, 110, 1253, 2150, 2596, 3055, 3606 |
| ScrFI | CCNGG | 8 cut(s) | 77, 1976, 2169, 2448, 2589, 2854, 3000, 3369 |
| SduI | GDGCHC | 6 cut(s) | 1403, 1411, 1720, 2917, 3027, 3135 |
| SfaNI | GCATC | 7 cut(s) | 1606, 2278, 2558, 2880, 3757, 4048, 4075 |
| SfcI | CTRYAG | 2 cut(s) | 1431, 3395 |
| SfuI | TTCGAA | 3 cut(s) | 947, 2961, 4070 |
| SinI | GGWCC | 3 cut(s) | 69, 3168, 3220 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 96, 2478, 3534 |
| SmlI | CTYRAG | 2 cut(s) | 183, 4154 |
| SmoI | CTYRAG | 2 cut(s) | 183, 4154 |
| SphI | GCATGC | 1 cut(s) | 2585 |
| SsiI | CCGC | 4 cut(s) | 224, 1127, 3148, 4106 |
| SspMI | CTAG | 3 cut(s) | 111, 1263, 2072 |
| SstI | GAGCTC | 1 cut(s) | 3135 |
| StyD4I | CCNGG | 8 cut(s) | 75, 1974, 2167, 2446, 2587, 2852, 2998, 3367 |
| StyI | CCWWGG | 3 cut(s) | 2203, 3187, 3297 |
| TaaI | ACNGT | 8 cut(s) | 32, 652, 1435, 1821, 1947, 2431, 2895, 3145 |
| TaiI | ACGT | 3 cut(s) | 10, 1318, 2680 |
| TatI | WGTACW | 1 cut(s) | 3889 |
| TseFI | GTSAC | 4 cut(s) | 505, 3047, 3536, 3551 |
| TseI | GCWGC | 4 cut(s) | 624, 1492, 2780, 4141 |
| Tsp45I | GTSAC | 4 cut(s) | 505, 3047, 3536, 3551 |
| TspGWI | ACGGA | 1 cut(s) | 1432 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2099 |
| VpaK11BI | GGWCC | 3 cut(s) | 69, 3168, 3220 |
| VspI | ATTAAT | 3 cut(s) | 777, 1005, 1767 |
| XapI | RAATTY | 6 cut(s) | 1175, 1556, 2492, 2638, 2993, 3225 |
| XceI | RCATGY | 3 cut(s) | 2585, 3335, 3706 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1464, 2985, 3452 |
| XspI | CTAG | 3 cut(s) | 111, 1263, 2072 |
| Zsp2I | ATGCAT | 1 cut(s) | 2573 |