Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001072

Physical Location & Seq

Genomic Coordinates Reverse (-)

7684189 .. 7687160

Gene Structure 2972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0098100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGCGAGCCGCGGCGGTTATCGGAACGGCGACGTTGCTCTTCGTCGGAGTAGTGGCTGCGGCGGTGGTGTTGTTGTGCTCGCCTGGGTTTCTGAACGGTGGCCATGGTTTTATGGAATCAAGGTTGTTGAGGTCTGGGGAAGGAAACAGCACGCTCGCCGCTGCTCACCGCAAGCTTCTTGTTCGGGGGCAAGAAAATGTGGAGGAACCAAATCGAATTTGGGGGGAGAAGTGTAGCCGGTCCGACATAGTGATTGAACAGGGTCCCACGGCACCGCTGCCGAGCGGCATTCCCACTTACACGGTGGAGATCATGAACGTGTGCGTCACCGGCTGTAACATTAGCCACATCCACCTCACCTGCGGTTGGTTCAGCTCCGCCACGCTGGTTAACCCGAAAGTCTTCAGGCGGCTTCGCCATAATGACTGCCTTGTGAACGACGGCAAGCCTCTGGTCAATGGTGGTACAATCTCTTTTGAGTATGCCAACACCTTCCTCTACCCACTCAAGGTTTCCTCTGTAGCTTGCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

177

Amino Acids

19.02

Weight (kDa)

8.52

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPD1_C	PF24068	80 - 176	3.6e-41	Tapetum determinant 1, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05490 AT3G24340
fragaria_vesca	FvH4_5g20730 FvH4_5g20730 FvH4_5g20730 FvH4_5g20730 FvH4_5g20730 FvH4_5g20740 FvH4_7g20540 FvH4_7g20540 FvH4_7g20540 FvH4_7g20540 FvH4_7g20540
malus_domestica	MD04G1053800.v1.1 MD17G1146600.v1.1 MD17G1146700.v1.1
prunus_persica	Prupe.5G049200_v2.0.a1 Prupe.5G049200_v2.0.a1 Prupe.5G052400_v2.0.a1
pyrus_communis	pycom04g04690
rosa_chinensis	RchiOBHm_Chr2g0150021 RchiOBHm_Chr7g0206511 RchiOBHm_Chr7g0206521
rosa_laevigata	RLG00000003305 RLG00000003307 RLG00000003308 RLG00000020460
rosa_multiflora	Rmu_sc0005065.1_g000044 Rmu_sc0009527.1_g000001 Rmu_sc0030360.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097510 Rroxscaffold_3G00251440 Rroxscaffold_3G00251450 Rroxscaffold_3G00251460 Rroxscaffold_3G00251470
rosa_rugosa	Rorug02G0417400 Rorug02G0417500 Rorug07G0098000 Rorug07G0098100 Rorug07G0098100 Rorug07G0098100 Rorug07G0098100 Rorug07G0098200 Rorug07G0098200
rosa_samantha	Rh2AG477300 Rh2BG489300 Rh2CG463000 Rh2DG498300 Rh7AG229600 Rh7AG229700 Rh7BG227200 Rh7BG227300 Rh7CG244400 Rh7CG244500 Rh7DG236600 Rh7DG236700
rosa_wichuraiana	Rw2G038920 Rw7G019770 Rw7G019780 Rw7G019790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	368
Acc36I	ACCTGC	1 cut(s)	368
AccB1I	GGYRCC	1 cut(s)	271
AccBSI	CCGCTC	1 cut(s)	285
AccII	CGCG	1 cut(s)	11
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	216
AcuI	CTGAAG	1 cut(s)	388
AfaI	GTAC	1 cut(s)	466
AfiI	CCNNNNNNNGG	2 cut(s)	366, 508
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	1 cut(s)	257
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	3 cut(s)	175, 375, 524
AluI	AGCT	3 cut(s)	175, 375, 524
Alw21I	GWGCWC	1 cut(s)	80
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	3 cut(s)	56, 161, 277
ApoI	RAATTY	1 cut(s)	216
Asp700I	GAANNNNTTC	1 cut(s)	401
AspS9I	GGNCC	2 cut(s)	240, 263
AsuHPI	GGTGA	3 cut(s)	158, 319, 349
AvaII	GGWCC	2 cut(s)	240, 263
BalI	TGGCCA	1 cut(s)	102
BanI	GGYRCC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	394
Bbv12I	GWGCWC	1 cut(s)	80
BbvI	GCAGC	3 cut(s)	43, 148, 264
BceAI	ACGGC	3 cut(s)	42, 285, 457
BciT130I	CCWGG	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	519
BfuAI	ACCTGC	1 cut(s)	368
BisI	GCNGC	9 cut(s)	9, 12, 57, 60, 159, 162, 278, 286, 410
BlsI	GCNGC	9 cut(s)	10, 13, 58, 61, 160, 163, 279, 287, 411
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	2 cut(s)	240, 263
BmgT120I	GGNCC	2 cut(s)	240, 263
BmiI	GGNNCC	4 cut(s)	207, 264, 265, 273
BmrFI	CCNGG	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	394
BpuEI	CTTGAG	1 cut(s)	491
BsaJI	CCNNGG	4 cut(s)	9, 83, 103, 267
Bsc4I	CCNNNNNNNGG	2 cut(s)	366, 508
Bse118I	RCCGGY	2 cut(s)	237, 329
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	4 cut(s)	9, 83, 103, 267
BseGI	GGATG	1 cut(s)	348
BseLI	CCNNNNNNNGG	2 cut(s)	366, 508
BseXI	GCAGC	3 cut(s)	43, 148, 264
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	1 cut(s)	271
BsiHKAI	GWGCWC	1 cut(s)	80
BsiSI	CCGG	2 cut(s)	238, 330
BslFI	GGGAC	1 cut(s)	249
BslI	CCNNNNNNNGG	2 cut(s)	366, 508
BsmFI	GGGAC	1 cut(s)	249
BsmI	GAATGC	1 cut(s)	288
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp143I	GATC	1 cut(s)	309
Bsp19I	CCATGG	1 cut(s)	103
BspANI	GGCC	1 cut(s)	102
BspFNI	CGCG	1 cut(s)	11
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	4 cut(s)	207, 264, 265, 273
BspMI	ACCTGC	1 cut(s)	368
BspQI	GCTCTTC	1 cut(s)	44
BspT107I	GGYRCC	1 cut(s)	271
BsrBI	CCGCTC	1 cut(s)	285
BsrFI	RCCGGY	2 cut(s)	237, 329
BssAI	RCCGGY	2 cut(s)	237, 329
BssECI	CCNNGG	4 cut(s)	9, 83, 103, 267
BssMI	GATC	1 cut(s)	309
BssT1I	CCWWGG	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	2 cut(s)	98, 304
Bst6I	CTCTTC	1 cut(s)	44
BstC8I	GCNNGC	7 cut(s)	6, 80, 152, 156, 173, 446, 526
BstDSI	CCRYGG	3 cut(s)	9, 103, 267
BstF5I	GGATG	1 cut(s)	348
BstFNI	CGCG	1 cut(s)	11
BstKTI	GATC	1 cut(s)	312
BstMBI	GATC	1 cut(s)	309
BstMWI	GCNNNNNNNGC	1 cut(s)	330
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	519
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	3 cut(s)	43, 148, 264
BstV2I	GAAGAC	1 cut(s)	394
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	3 cut(s)	9, 103, 267
BtsCI	GGATG	1 cut(s)	348
BveI	ACCTGC	1 cut(s)	368
Cac8I	GCNNGC	7 cut(s)	6, 80, 152, 156, 173, 446, 526
CciI	TCATGA	1 cut(s)	312
Cfr10I	RCCGGY	2 cut(s)	237, 329
Cfr13I	GGNCC	2 cut(s)	240, 263
Cfr42I	CCGCGG	1 cut(s)	12
CpoI	CGGWCCG	1 cut(s)	240
CseI	GACGC	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	465
CspI	CGGWCCG	1 cut(s)	240
CviAII	CATG	2 cut(s)	104, 313
CviQI	GTAC	1 cut(s)	465
DpnI	GATC	1 cut(s)	311
DpnII	GATC	1 cut(s)	309
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
EciI	GGCGGA	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	103
Eco47I	GGWCC	2 cut(s)	240, 263
Eco57I	CTGAAG	1 cut(s)	388
EcoO109I	RGGNCCY	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	2 cut(s)	107, 316
FaiI	YATR	6 cut(s)	105, 113, 248, 314, 420, 483
FaqI	GGGAC	1 cut(s)	249
FatI	CATG	2 cut(s)	103, 312
Fnu4HI	GCNGC	9 cut(s)	9, 12, 57, 60, 159, 162, 278, 286, 410
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	9 cut(s)	9, 12, 57, 60, 159, 162, 278, 286, 410
GluI	GCNGC	9 cut(s)	9, 12, 57, 60, 159, 162, 278, 286, 410
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	2 cut(s)	238, 330
HgaI	GACGC	1 cut(s)	313
Hin1II	CATG	2 cut(s)	107, 316
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	1 cut(s)	116
HpaI	GTTAAC	1 cut(s)	391
HpaII	CCGG	2 cut(s)	238, 330
HphI	GGTGA	3 cut(s)	158, 319, 349
Hpy166II	GTNNAC	2 cut(s)	391, 436
Hpy188I	TCNGA	4 cut(s)	23, 47, 93, 244
Hpy188III	TCNNGA	1 cut(s)	313
Hpy8I	GTNNAC	2 cut(s)	391, 436
Hpy99I	CGWCG	3 cut(s)	34, 47, 443
HpyAV	CCTTC	2 cut(s)	134, 502
HpyCH4III	ACNGT	2 cut(s)	98, 304
HpyCH4IV	ACGT	2 cut(s)	32, 318
HpyF10VI	GCNNNNNNNGC	1 cut(s)	330
HpySE526I	ACGT	2 cut(s)	32, 318
Hsp92II	CATG	2 cut(s)	107, 316
KflI	GGGWCCC	1 cut(s)	263
KspAI	GTTAAC	1 cut(s)	391
KspI	CCGCGG	1 cut(s)	12
Kzo9I	GATC	1 cut(s)	309
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	1 cut(s)	380
Lsp1109I	GCAGC	3 cut(s)	43, 148, 264
MaeII	ACGT	2 cut(s)	32, 318
MaeIII	GTNAC	2 cut(s)	325, 335
MalI	GATC	1 cut(s)	311
MbiI	CCGCTC	1 cut(s)	285
MboI	GATC	1 cut(s)	309
MboII	GAAGA	2 cut(s)	31, 394
MhlI	GDGCHC	1 cut(s)	80
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	1 cut(s)	216
MluNI	TGGCCA	1 cut(s)	102
MmeI	TCCRAC	2 cut(s)	25, 267
MnlI	CCTC	6 cut(s)	123, 196, 365, 459, 506, 526
Mox20I	TGGCCA	1 cut(s)	102
MroXI	GAANNNNTTC	1 cut(s)	401
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	317
Msp20I	TGGCCA	1 cut(s)	102
MspA1I	CMGCKG	3 cut(s)	11, 161, 277
MspI	CCGG	2 cut(s)	238, 330
MspR9I	CCNGG	1 cut(s)	84
Mva1269I	GAATGC	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	84
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	330
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	1 cut(s)	309
NlaIII	CATG	2 cut(s)	107, 316
NlaIV	GGNNCC	4 cut(s)	207, 264, 265, 273
NmeAIII	GCCGAG	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	325
PagI	TCATGA	1 cut(s)	312
PaqCI	CACCTGC	1 cut(s)	368
PciSI	GCTCTTC	1 cut(s)	44
PctI	GAATGC	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	401
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	9 cut(s)	10, 13, 58, 61, 160, 163, 279, 287, 411
PpuMI	RGGWCCY	1 cut(s)	263
Psp5II	RGGWCCY	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	4 cut(s)	207, 264, 265, 273
PspPI	GGNCC	2 cut(s)	240, 263
PspPPI	RGGWCCY	1 cut(s)	263
RsaI	GTAC	1 cut(s)	466
RsaNI	GTAC	1 cut(s)	465
RseI	CAYNNNNRTG	1 cut(s)	317
Rsr2I	CGGWCCG	1 cut(s)	240
RsrII	CGGWCCG	1 cut(s)	240
SacII	CCGCGG	1 cut(s)	12
SapI	GCTCTTC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	9 cut(s)	9, 12, 57, 60, 159, 162, 278, 286, 410
Sau3AI	GATC	1 cut(s)	309
Sau96I	GGNCC	2 cut(s)	240, 263
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	1 cut(s)	80
SfcI	CTRYAG	1 cut(s)	519
Sfr303I	CCGCGG	1 cut(s)	12
SgrBI	CCGCGG	1 cut(s)	12
SinI	GGWCC	2 cut(s)	240, 263
SmiMI	CAYNNNNRTG	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	2 cut(s)	98, 304
TaiI	ACGT	2 cut(s)	35, 321
TaqI	TCGA	1 cut(s)	214
TasI	AATT	1 cut(s)	216
TauI	GCSGC	6 cut(s)	11, 14, 62, 161, 288, 412
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	3 cut(s)	56, 161, 277
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	1 cut(s)	329
VpaK11BI	GGWCC	2 cut(s)	240, 263
XapI	RAATTY	1 cut(s)	216
XcmI	CCANNNNNNNNNTGG	2 cut(s)	216, 301
XmnI	GAANNNNTTC	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.