Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001072

Physical Location & Seq

Genomic Coordinates Forward (+)

13293046 .. 13294154

Gene Structure 1109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1146700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAAGGTTTTCAACGATCCTTCCAGTAAAGCCAAGGTTTTACTAGCTTCAACTAAAGGATGCTGTGAAGGAATAAGCCTGGTCGGAGCTTCAAGGGTTGTGCTTCTGGACGTCACTTGGAACCCGTCGGTGGAGAGACAAGCTATATCCCGTGCGCTAGGACAGAAAAAAGTTGTCTATGTGTACCACCTCCTCATGGGTGGAACAAATGAGGAGCACAAGTACCAACGCCAAGTTGACAAGAGCCGTTTGTCTGAGTTGGTGTTTTCTGATTCGGACAGGAGTGATGCTTGCGAGAAGAAAGTCCGAGCTGTTTCTGCGGATAAGGTTTTGGAGGAGATGGCTCAGCATGAGAAACTGAAACACATATTCGAGAGTATAGCTTTGCTGCACGAAGACATCTATTTTGAGCAGCTAGGCCTATCAACTTTTGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

147

Amino Acids

16.34

Weight (kDa)

6.96

Isoelectric Point (pI)

31.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	4 - 52	9.1e-06	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05490 AT3G24340
fragaria_vesca	FvH4_5g20730 FvH4_5g20730 FvH4_5g20730 FvH4_5g20730 FvH4_5g20730 FvH4_5g20740 FvH4_7g20540 FvH4_7g20540 FvH4_7g20540 FvH4_7g20540 FvH4_7g20540
malus_domestica	MD04G1053800.v1.1 MD17G1146600.v1.1 MD17G1146700.v1.1
prunus_persica	Prupe.5G049200_v2.0.a1 Prupe.5G049200_v2.0.a1 Prupe.5G052400_v2.0.a1
pyrus_communis	pycom04g04690
rosa_chinensis	RchiOBHm_Chr2g0150021 RchiOBHm_Chr7g0206511 RchiOBHm_Chr7g0206521
rosa_laevigata	RLG00000003305 RLG00000003307 RLG00000003308 RLG00000020460
rosa_multiflora	Rmu_sc0005065.1_g000044 Rmu_sc0009527.1_g000001 Rmu_sc0030360.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097510 Rroxscaffold_3G00251440 Rroxscaffold_3G00251450 Rroxscaffold_3G00251460 Rroxscaffold_3G00251470
rosa_rugosa	Rorug02G0417400 Rorug02G0417500 Rorug07G0098000 Rorug07G0098100 Rorug07G0098100 Rorug07G0098100 Rorug07G0098100 Rorug07G0098200 Rorug07G0098200
rosa_samantha	Rh2AG477300 Rh2BG489300 Rh2CG463000 Rh2DG498300 Rh7AG229600 Rh7AG229700 Rh7BG227200 Rh7BG227300 Rh7CG244400 Rh7CG244500 Rh7DG236600 Rh7DG236700
rosa_wichuraiana	Rw2G038920 Rw7G019770 Rw7G019780 Rw7G019790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	114
AciI	CCGC	1 cut(s)	320
AclWI	GGATC	1 cut(s)	11
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	2 cut(s)	185, 224
AfiI	CCNNNNNNNGG	2 cut(s)	130, 196
AgsI	TTSAA	3 cut(s)	13, 51, 93
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	6 cut(s)	47, 89, 143, 311, 383, 415
AluI	AGCT	6 cut(s)	47, 89, 143, 311, 383, 415
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	1 cut(s)	11
AoxI	GGCC	1 cut(s)	418
ApeKI	GCWGC	3 cut(s)	388, 412, 434
ArsI	GACNNNNNNTTYG	2 cut(s)	389, 421
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	402
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	3 cut(s)	375, 421, 424
BccI	CCATC	1 cut(s)	334
BceAI	ACGGC	1 cut(s)	231
BciT130I	CCWGG	1 cut(s)	80
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	3 cut(s)	44, 158, 416
BisI	GCNGC	3 cut(s)	389, 413, 435
BlpI	GCTNAGC	1 cut(s)	345
BlsI	GCNGC	3 cut(s)	390, 414, 436
Bme1390I	CCNGG	1 cut(s)	80
BmiI	GGNNCC	1 cut(s)	122
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	2 cut(s)	50, 277
BpiI	GAAGAC	1 cut(s)	402
Bpu1102I	GCTNAGC	1 cut(s)	345
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 196
Bse1I	ACTGG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	65
BseLI	CCNNNNNNNGG	2 cut(s)	130, 196
BseMII	CTCAG	2 cut(s)	246, 359
BseNI	ACTGG	1 cut(s)	24
BseRI	GAGGAG	3 cut(s)	182, 227, 350
BseXI	GCAGC	3 cut(s)	375, 421, 424
BsgI	GTGCAG	1 cut(s)	374
BshFI	GGCC	1 cut(s)	420
BsiHKAI	GWGCWC	1 cut(s)	219
BslI	CCNNNNNNNGG	2 cut(s)	130, 196
BsmAI	GTCTC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	420
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	16
Bsp1720I	GCTNAGC	1 cut(s)	345
BspACI	CCGC	1 cut(s)	320
BspANI	GGCC	1 cut(s)	420
BspCNI	CTCAG	2 cut(s)	247, 358
BspLI	GGNNCC	1 cut(s)	122
BspPI	GGATC	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	1 cut(s)	16
BssNI	GRCGYC	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	80
BstACI	GRCGYC	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	2 cut(s)	255, 345
BstF5I	GGATG	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	1 cut(s)	19
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	78
BstV1I	GCAGC	3 cut(s)	375, 421, 424
BstV2I	GAAGAC	1 cut(s)	402
BsuRI	GGCC	1 cut(s)	420
BtsCI	GGATG	1 cut(s)	65
Cac8I	GCNNGC	1 cut(s)	292
CfoI	GCGC	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	184, 223
CviAII	CATG	3 cut(s)	196, 350, 438
CviQI	GTAC	2 cut(s)	184, 223
DdeI	CTNAG	2 cut(s)	255, 345
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	33
Eco147I	AGGCCT	1 cut(s)	420
EcoRII	CCWGG	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	3 cut(s)	199, 353, 441
FaiI	YATR	7 cut(s)	146, 180, 197, 351, 368, 380, 439
FatI	CATG	3 cut(s)	195, 349, 437
Fnu4HI	GCNGC	3 cut(s)	389, 413, 435
FokI	GGATG	1 cut(s)	72
Fsp4HI	GCNGC	3 cut(s)	389, 413, 435
FspBI	CTAG	3 cut(s)	44, 158, 416
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	3 cut(s)	389, 413, 435
HaeIII	GGCC	1 cut(s)	420
HhaI	GCGC	1 cut(s)	157
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	3 cut(s)	199, 353, 441
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	1 cut(s)	272
Hpy166II	GTNNAC	2 cut(s)	184, 238
Hpy188I	TCNGA	5 cut(s)	86, 256, 271, 277, 308
Hpy188III	TCNNGA	2 cut(s)	107, 373
Hpy8I	GTNNAC	2 cut(s)	184, 238
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	2 cut(s)	30, 62
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	2 cut(s)	391, 437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	2 cut(s)	255, 345
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	3 cut(s)	199, 353, 441
HspAI	GCGC	1 cut(s)	155
Kzo9I	GATC	1 cut(s)	16
LmnI	GCTCC	2 cut(s)	86, 214
LpnPI	CCDG	5 cut(s)	37, 65, 92, 92, 265
Lsp1109I	GCAGC	3 cut(s)	375, 421, 424
LweI	GCATC	2 cut(s)	50, 277
MaeI	CTAG	3 cut(s)	44, 158, 416
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	2 cut(s)	310, 407
MhlI	GDGCHC	1 cut(s)	219
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	4 cut(s)	200, 203, 205, 328
MroXI	GAANNNNTTC	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	317
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	3 cut(s)	199, 353, 441
NlaIV	GGNNCC	1 cut(s)	122
NmuCI	GTSAC	1 cut(s)	112
PceI	AGGCCT	1 cut(s)	420
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	272
PkrI	GCNGC	3 cut(s)	390, 414, 436
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	122
RsaI	GTAC	2 cut(s)	185, 224
RsaNI	GTAC	2 cut(s)	184, 223
SatI	GCNGC	3 cut(s)	389, 413, 435
Sau3AI	GATC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	219
SfaNI	GCATC	2 cut(s)	50, 277
SseBI	AGGCCT	1 cut(s)	420
SsiI	CCGC	1 cut(s)	320
SspMI	CTAG	3 cut(s)	44, 158, 416
StuI	AGGCCT	1 cut(s)	420
StyD4I	CCNGG	1 cut(s)	78
StyI	CCWWGG	1 cut(s)	33
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	1 cut(s)	372
TfiI	GAWTC	1 cut(s)	272
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	3 cut(s)	388, 412, 434
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	1 cut(s)	17
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	3 cut(s)	44, 158, 416
ZraI	GACGTC	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.