Rorug07G0098200

SNF2 domain-containing protein CLASSY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001072
Physical Location & Seq
Reverse (-)
7687880 .. 7694676
6797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0098200.1

Sequence Viewer

Length: 2652 bp
ATGGAGGCGGTGGTGAAGCAGGAGCTTCTGAACGACGTGCCGCACTCTTCGCCGAGGCGGAAGGGCGCCATTTCGGCGGTGCCGCCGGACTCGGTAATCGCGCTTGATACGAGCAGTAGTGACTCGGACTCCGACTCGGACTCGGACTCGGAGGAGGAGAACGGGAAGGACGACGCCGTTTTGGGACGCGTGCTGAAGAAGAGGAGGCTGAACGAGATGGGAGTGATTATGCCGGTCTTGGATCCTCTGCCTTCGCGGGAGGAGGAGGAGGAGGAGTTGCCGCGGATGTTGCCGGCGCCGGCGGTGTCCGGAGCCGGGAGGGGGATGTTGAGTGTTAATTACTGCAAGCAGTTTTGGAAGGCTGGGGAGTTTGAGGTAGTGCCTTGTGGCGATGCGGATTCTTCTGCTGGCGGGATGGACCATGTGAGGATTCATCCCAAGTTTCTGCATTCCAATGCAACCAGTCATAAGTGGGCTCTTGGAGCTTTTGCGGAGCTATTAGACAATGCAATAGATGAGGTTTGCACTGGTGCTACTTATGTTAAGGTAGATATGCTTGAAAATCAGAAAGACGGAAGCAGAATTTTGCTGATTGAAGATAATGGTGGTGGGATGAATCCAGATAAGATACGAGACTGCATGTCATTGGGGTTTTCTACAAAGAGCAAAATCGCAAACACAATTGGACAATATGGAAATGGTTTTAAAACAAGTACCATGAGGCTTGGGGCAGACGTGATTGTGTTCTCTCGTTGTTGTGGAAAAGATGGAAAAAGTGCTACGCAGAGCATTGGATTGCTGTCTTACACATTTTTGAGGAGCACAGGAAAGGAAGATACTGTTGTTCCCATGCTTGATTATGAAAGACAAGGAGCAGATTGGTACAGGATGAGACGATCCTCTCCCAGCGATTGGAACAAAAATTTGGAAACGATACTTGAGTGGTCACCATTTTCTAGAGAAGAAGACTTGGATCACCAGTTCTATCAGATGAAAAACCAAGGCACTCGAGTAATTATTTACAATCTTTGGGAGGATGATGAAGGACAGTTGGAGCTTGATTTTGATGCTGATCCACATGATATTCAAATCAGAGGTGTCAATCGCGATGAAAAGAATATACAAATGGCTAAACAGTTTCCTAATTCTCGTCATTTTTTGACCTACCGGCACTCATTGAGGAGTTATGCAGCAATTCTATATTTGCGGCTACCCATCGACTTCCGAATTATTCTGCGTGGGAAGGATGTTGAGCACCACAACATAGTGAATGATATGATGATGTCCCAAAAAGTCACATATAAGCCACAGCCTAGTACTGCTGATGGGATACCCAAGGATGCAAATATGGCTGCTACTGTCACCATTGGGTTTGTGAAGGATGCAAAACATCATATTGATGTTCAGGGGTTCAATGTCTATCACAAGAATCGACTGATTAAGCCATTTTGGCGGCTTTGGAACGCTGCAGGAAGTGATGGCCGCGGTGTAATAGGTCTGTTAGAAGCCAATTTTGTTGAACCAGCTCATGACAAGCAAGGGTTTGAGCGTACAACAATTCTTTCAAGACTCGAGGCAAAATTAGTGCAAATGCAAAAGACATACTGGTCTACTAATTGTCATAAAATTGGATATGCTGCACGACGTAATAAGAAGGTCAACAATGCTGAAGATAAAGAGACTTCCCCTGATTTTCTTTCTGAAAGGGACGGTACCACATCAGGTGTCAAGAGACCACGTTCACTTTCAGATACATTCCGTTCAAAAACGGCTGACAATGGACATGGGAATATACATGTGTCCGGTAAAGGCAAAAGTACAGTGCAAATCCAAACAAAGTTGACCCCAACAAGATCCGGGGAAGAATCAAGCTCTTCTGAAGCATCACTACCTTTGCCAGCCAATGTTAGGGGTGGAAATGTGCATAAACAAGTGAATGGCGGTAGGGAATCACTACCTTCCCCAGCCAATGTTAGGGGTGGAAACGTGCATAAACAAGTGAATGGCGGTAGGGAATCACTACCTTCGCCAGCCAATGTTAGGGGTGGAAACGTGCATAAACAAGTGAATGGCGGTAGGGAATCTAGGGACAAGGACATACATGTTGCTGTATGTGATAAGCAAGTGAATGGCAGTTTTCATAAGTCATTTACTGCTATGCATTATTCTGGAAAAGATGGTCCAGCTGTGACTGAATTATCTTCAGATATGGACGATACTGAATCCCAACAAGAGTGTACACCATGCAGAGGAACCAGTTTATCTGCCACAAAATCCAAGTCAAAGGGAAATGATTTTAATTTGGAGGATTTGAGCATTGTGCAGCGATTGAGAAAGGAGAATCATGAACTGAAAGAAAAATTGAAAAAACAGGACGAACAGGCTCCAGCTGAATTGCTTAAGGACTTGATGCTGGAAAGGGAGAAGAACATAACACTTGAAACCAAGCTGAAAGAAGCGGAAAAACAGATTGAGTTCTTGAACAAGGAACAAGACAGTCTAATTGATATATTCACGGATGAGAGGCAGCGACGAGATGATGAAGAGAACAAGTTGAGAAAGAAGCTGCAGGATGCATCTAATACTATTCAAGAGTTGGTTGAGAAGGTAAGGGAGCTGGAAAGGAGGAAGCCTCCTAAGATGGAAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

883

Amino Acids

98.99

Weight (kDa)

6.61

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HATPase_c_3 PF13589 161 - 257 4.5e-16 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c PF02518 162 - 241 1.5e-06 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Morc6_S5 PF17942 391 - 536 7.8e-60 Morc6 ribosomal protein S5 domain 2-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1606
Acc65I GGTACC 1 cut(s) 1712
AccB1I GGYRCC 4 cut(s) 65, 79, 295, 1712
AccB7I CCANNNNNTGG 1 cut(s) 912
AccI GTMKAC 1 cut(s) 1610
AccII CGCG 6 cut(s) 101, 189, 256, 283, 1107, 1485
AccIII TCCGGA 1 cut(s) 308
AclWI GGATC 6 cut(s) 236, 249, 891, 981, 1067, 1848
AcoI YGGCCR 1 cut(s) 1480
AcsI RAATTY 2 cut(s) 582, 922
AcuI CTGAAG 4 cut(s) 215, 1689, 1899, 2187
AcyI GRCGYC 3 cut(s) 66, 174, 296
AfaI GTAC 7 cut(s) 715, 884, 1318, 1552, 1714, 1819, 2239
AfiI CCNNNNNNNGG 7 cut(s) 315, 321, 912, 1908, 1974, 2040, 2249
AflII CTTAAG 1 cut(s) 2399
AflIII ACRYGT 3 cut(s) 187, 1795, 2101
AhdI GACNNNNNGTC 1 cut(s) 640
AjiI CACGTC 2 cut(s) 37, 736
AjuI GAANNNNNNNTTGG 2 cut(s) 908, 940
AloI GAACNNNNNNTCC 2 cut(s) 965, 997
Alw21I GWGCWC 2 cut(s) 824, 1257
Alw26I GTCTC 4 cut(s) 627, 886, 1673, 1726
AlwI GGATC 6 cut(s) 236, 249, 891, 981, 1067, 1848
Ama87I CYCGRG 2 cut(s) 1008, 1571
Aor13HI TCCGGA 1 cut(s) 308
AoxI GGCC 1 cut(s) 1480
ApeKI GCWGC 7 cut(s) 1190, 1352, 1466, 1637, 2323, 2527, 2566
ApoI RAATTY 2 cut(s) 582, 922
ArsI GACNNNNNNTTYG 2 cut(s) 2264, 2296
Asp718I GGTACC 1 cut(s) 1712
AspLEI GCGC 3 cut(s) 68, 103, 298
AspS9I GGNCC 2 cut(s) 418, 2180
AsuC2I CCSGG 2 cut(s) 316, 1858
AsuHPI GGTGA 4 cut(s) 25, 939, 968, 1354
AvaI CYCGRG 2 cut(s) 1008, 1571
AvaII GGWCC 2 cut(s) 418, 2180
BaeI ACNNNNGTAYC 4 cut(s) 828, 861, 926, 959
BamHI GGATCC 1 cut(s) 241
BanI GGYRCC 4 cut(s) 65, 79, 295, 1712
BanII GRGCYC 1 cut(s) 478
BarI GAAGNNNNNNTAC 2 cut(s) 1872, 1904
BbsI GAAGAC 1 cut(s) 972
Bbv12I GWGCWC 2 cut(s) 824, 1257
BbvI GCAGC 7 cut(s) 1202, 1339, 1453, 1624, 2335, 2539, 2553
BccI CCATC 8 cut(s) 211, 409, 761, 1223, 1319, 1472, 2171, 2635
BceAI ACGGC 2 cut(s) 161, 1785
BciVI GTATCC 1 cut(s) 1323
BcnI CCSGG 2 cut(s) 316, 1858
BcoDI GTCTC 4 cut(s) 627, 886, 1673, 1726
BfaI CTAG 3 cut(s) 957, 1314, 2085
BfmI CTRYAG 2 cut(s) 1467, 2567
BfoI RGCGCY 2 cut(s) 69, 299
BfrI CTTAAG 1 cut(s) 2399
BfuI GTATCC 1 cut(s) 1323
BglI GCCNNNNNGGC 2 cut(s) 74, 1450
BmcAI AGTACT 1 cut(s) 1318
Bme1390I CCNGG 2 cut(s) 316, 1858
Bme18I GGWCC 2 cut(s) 418, 2180
BmeRI GACNNNNNGTC 1 cut(s) 640
BmeT110I CYCGRG 2 cut(s) 1008, 1571
BmgBI CACGTC 2 cut(s) 37, 736
BmgT120I GGNCC 2 cut(s) 418, 2180
BmiI GGNNCC 8 cut(s) 67, 81, 243, 297, 313, 1714, 2254, 2385
BmrFI CCNGG 2 cut(s) 316, 1858
BmsI GCATC 8 cut(s) 382, 1057, 1330, 1372, 1892, 2400, 2563, 2585
BpiI GAAGAC 1 cut(s) 972
BplI GAGNNNNNCTC 2 cut(s) 2617, 2649
BpmI CTGGAG 1 cut(s) 2370
BpuEI CTTGAG 1 cut(s) 959
BpuMI CCSGG 2 cut(s) 316, 1858
BsaBI GATNNNNATC 1 cut(s) 1071
BsaHI GRCGYC 3 cut(s) 66, 174, 296
BsaI GGTCTC 1 cut(s) 1726
BsaJI CCNNGG 6 cut(s) 53, 281, 1000, 1335, 1483, 1857
BsaWI WCCGGW 2 cut(s) 308, 1802
BsaXI ACNNNNNCTCC 4 cut(s) 113, 143, 260, 290
Bsc4I CCNNNNNNNGG 7 cut(s) 315, 321, 912, 1908, 1974, 2040, 2249
Bse118I RCCGGY 4 cut(s) 232, 292, 298, 1167
Bse1I ACTGG 5 cut(s) 462, 532, 979, 1610, 2256
Bse8I GATNNNNATC 1 cut(s) 1071
BseAI TCCGGA 1 cut(s) 308
BseDI CCNNGG 6 cut(s) 53, 281, 1000, 1335, 1483, 1857
BseJI GATNNNNATC 1 cut(s) 1071
BseLI CCNNNNNNNGG 7 cut(s) 315, 321, 912, 1908, 1974, 2040, 2249
BseNI ACTGG 5 cut(s) 462, 532, 979, 1610, 2256
BseXI GCAGC 7 cut(s) 1202, 1339, 1453, 1624, 2335, 2539, 2553
BseYI CCCAGC 3 cut(s) 362, 905, 1963
BsgI GTGCAG 2 cut(s) 1623, 2342
Bsh1236I CGCG 6 cut(s) 101, 189, 256, 283, 1107, 1485
BshFI GGCC 1 cut(s) 1482
BshNI GGYRCC 4 cut(s) 65, 79, 295, 1712
BsiHKAI GWGCWC 2 cut(s) 824, 1257
BsiHKCI CYCGRG 2 cut(s) 1008, 1571
BsiSI CCGG 9 cut(s) 86, 233, 293, 299, 309, 315, 1168, 1803, 1857
BslFI GGGAC 4 cut(s) 198, 1270, 1721, 2102
BslI CCNNNNNNNGG 7 cut(s) 315, 321, 912, 1908, 1974, 2040, 2249
BsmAI GTCTC 4 cut(s) 627, 886, 1673, 1726
BsmBI CGTCTC 1 cut(s) 886
BsmFI GGGAC 4 cut(s) 198, 1270, 1721, 2102
BsmI GAATGC 1 cut(s) 448
BsnI GGCC 1 cut(s) 1482
Bso31I GGTCTC 1 cut(s) 1726
BsoBI CYCGRG 2 cut(s) 1008, 1571
Bsp1286I GDGCHC 3 cut(s) 478, 824, 1257
Bsp13I TCCGGA 1 cut(s) 308
Bsp1407I TGTACA 1 cut(s) 2237
Bsp143I GATC 5 cut(s) 241, 896, 973, 1072, 1853
Bsp68I TCGCGA 1 cut(s) 1107
BspANI GGCC 1 cut(s) 1482
BspEI TCCGGA 1 cut(s) 308
BspFNI CGCG 6 cut(s) 101, 189, 256, 283, 1107, 1485
BspHI TCATGA 2 cut(s) 1528, 2344
BspLI GGNNCC 8 cut(s) 67, 81, 243, 297, 313, 1714, 2254, 2385
BspMAI CTGCAG 2 cut(s) 1471, 2571
BspPI GGATC 6 cut(s) 236, 249, 891, 981, 1067, 1848
BspQI GCTCTTC 1 cut(s) 1879
BspT107I GGYRCC 4 cut(s) 65, 79, 295, 1712
BspTI CTTAAG 1 cut(s) 2399
BspTNI GGTCTC 1 cut(s) 1726
BsrFI RCCGGY 4 cut(s) 232, 292, 298, 1167
BsrGI TGTACA 1 cut(s) 2237
BsrI ACTGG 5 cut(s) 462, 532, 979, 1610, 2256
BssAI RCCGGY 4 cut(s) 232, 292, 298, 1167
BssECI CCNNGG 6 cut(s) 53, 281, 1000, 1335, 1483, 1857
BssMI GATC 5 cut(s) 241, 896, 973, 1072, 1853
BssNI GRCGYC 3 cut(s) 66, 174, 296
BssT1I CCWWGG 2 cut(s) 1000, 1335
Bst4CI ACNGT 7 cut(s) 841, 1050, 1137, 1360, 1712, 1822, 2498
Bst6I CTCTTC 4 cut(s) 52, 194, 1879, 2538
BstACI GRCGYC 3 cut(s) 66, 174, 296
BstAFI CTTAAG 1 cut(s) 2399
BstAUI TGTACA 1 cut(s) 2237
BstC8I GCNNGC 7 cut(s) 191, 294, 300, 347, 409, 1899, 2031
BstDEI CTNAG 1 cut(s) 2637
BstDSI CCRYGG 2 cut(s) 281, 1483
BstEII GGTNACC 1 cut(s) 945
BstFNI CGCG 6 cut(s) 101, 189, 256, 283, 1107, 1485
BstH2I RGCGCY 2 cut(s) 69, 299
BstHHI GCGC 3 cut(s) 68, 103, 298
BstKTI GATC 5 cut(s) 244, 899, 976, 1075, 1856
BstMAI GTCTC 4 cut(s) 627, 886, 1673, 1726
BstMBI GATC 5 cut(s) 241, 896, 973, 1072, 1853
BstMWI GCNNNNNNNGC 6 cut(s) 49, 74, 289, 482, 1349, 1450
BstNSI RCATGY 3 cut(s) 643, 1799, 2105
BstPI GGTNACC 1 cut(s) 945
BstSCI CCNGG 2 cut(s) 314, 1856
BstSFI CTRYAG 2 cut(s) 1467, 2567
BstUI CGCG 6 cut(s) 101, 189, 256, 283, 1107, 1485
BstV1I GCAGC 7 cut(s) 1202, 1339, 1453, 1624, 2335, 2539, 2553
BstV2I GAAGAC 1 cut(s) 972
BstX2I RGATCY 2 cut(s) 241, 1853
BstYI RGATCY 2 cut(s) 241, 1853
BsuI GTATCC 1 cut(s) 1323
BsuRI GGCC 1 cut(s) 1482
BtgI CCRYGG 2 cut(s) 281, 1483
BtgZI GCGATG 2 cut(s) 405, 1122
BtrI CACGTC 2 cut(s) 37, 736
BtsIMutI CAGTG 2 cut(s) 525, 1827
BtuMI TCGCGA 1 cut(s) 1107
Cac8I GCNNGC 7 cut(s) 191, 294, 300, 347, 409, 1899, 2031
CciI TCATGA 2 cut(s) 1528, 2344
CfoI GCGC 3 cut(s) 68, 103, 298
Cfr10I RCCGGY 4 cut(s) 232, 292, 298, 1167
Cfr13I GGNCC 2 cut(s) 418, 2180
Cfr42I CCGCGG 2 cut(s) 284, 1486
CseI GACGC 2 cut(s) 182, 195
Csp6I GTAC 7 cut(s) 714, 883, 1317, 1551, 1713, 1818, 2238
CviQI GTAC 7 cut(s) 714, 883, 1317, 1551, 1713, 1818, 2238
DdeI CTNAG 1 cut(s) 2637
DinI GGCGCC 2 cut(s) 67, 297
DpnI GATC 5 cut(s) 243, 898, 975, 1074, 1855
DpnII GATC 5 cut(s) 241, 896, 973, 1072, 1853
DraI TTTAAA 1 cut(s) 706
DrdI GACNNNNNNGTC 1 cut(s) 1606
DriI GACNNNNNGTC 1 cut(s) 640
DseDI GACNNNNNNGTC 1 cut(s) 1606
EaeI YGGCCR 1 cut(s) 1480
Eam1104I CTCTTC 4 cut(s) 52, 194, 1879, 2538
Eam1105I GACNNNNNGTC 1 cut(s) 640
EarI CTCTTC 4 cut(s) 52, 194, 1879, 2538
EciI GGCGGA 1 cut(s) 73
Eco130I CCWWGG 2 cut(s) 1000, 1335
Eco24I GRGCYC 1 cut(s) 478
Eco31I GGTCTC 1 cut(s) 1726
Eco47I GGWCC 2 cut(s) 418, 2180
Eco57I CTGAAG 4 cut(s) 215, 1689, 1899, 2187
Eco88I CYCGRG 2 cut(s) 1008, 1571
Eco91I GGTNACC 1 cut(s) 945
EcoO65I GGTNACC 1 cut(s) 945
EcoT14I CCWWGG 2 cut(s) 1000, 1335
EcoT22I ATGCAT 2 cut(s) 2163, 2578
EcoT38I GRGCYC 1 cut(s) 478
EgeI GGCGCC 2 cut(s) 67, 297
EheI GGCGCC 2 cut(s) 67, 297
ErhI CCWWGG 2 cut(s) 1000, 1335
Esp3I CGTCTC 1 cut(s) 886
FaqI GGGAC 4 cut(s) 198, 1270, 1721, 2102
FauI CCCGC 2 cut(s) 249, 404
FblI GTMKAC 1 cut(s) 1610
FriOI GRGCYC 1 cut(s) 478
FspBI CTAG 3 cut(s) 957, 1314, 2085
GlaI GCGC 3 cut(s) 67, 102, 297
GsaI CCCAGC 3 cut(s) 366, 909, 1967
GsuI CTGGAG 1 cut(s) 2370
HaeII RGCGCY 2 cut(s) 69, 299
HaeIII GGCC 1 cut(s) 1482
HapII CCGG 9 cut(s) 86, 233, 293, 299, 309, 315, 1168, 1803, 1857
HgaI GACGC 2 cut(s) 182, 195
HhaI GCGC 3 cut(s) 68, 103, 298
Hin1I GRCGYC 3 cut(s) 66, 174, 296
Hin6I GCGC 3 cut(s) 66, 101, 296
HinP1I GCGC 3 cut(s) 66, 101, 296
HincII GTYRAC 2 cut(s) 1660, 1842
HindII GTYRAC 2 cut(s) 1660, 1842
HpaII CCGG 9 cut(s) 86, 233, 293, 299, 309, 315, 1168, 1803, 1857
HphI GGTGA 4 cut(s) 25, 939, 968, 1354
Hpy166II GTNNAC 6 cut(s) 1611, 1660, 1742, 1842, 2238, 2240
Hpy8I GTNNAC 6 cut(s) 1611, 1660, 1742, 1842, 2238, 2240
Hpy99I CGWCG 4 cut(s) 38, 176, 1647, 2535
HpyCH4III ACNGT 7 cut(s) 841, 1050, 1137, 1360, 1712, 1822, 2498
HpyCH4IV ACGT 6 cut(s) 36, 735, 1645, 1738, 1986, 2052
HpyF10VI GCNNNNNNNGC 6 cut(s) 49, 74, 289, 482, 1349, 1450
HpyF3I CTNAG 1 cut(s) 2637
HpySE526I ACGT 6 cut(s) 36, 735, 1645, 1738, 1986, 2052
Hsp92I GRCGYC 3 cut(s) 66, 174, 296
HspAI GCGC 3 cut(s) 66, 101, 296
KasI GGCGCC 2 cut(s) 65, 295
Kpn2I TCCGGA 1 cut(s) 308
KpnI GGTACC 1 cut(s) 1716
KroI GCCGGC 2 cut(s) 292, 298
KroNI GCCGGC 2 cut(s) 294, 300
KspI CCGCGG 2 cut(s) 284, 1486
Kzo9I GATC 5 cut(s) 241, 896, 973, 1072, 1853
LguI GCTCTTC 1 cut(s) 1879
LmnI GCTCC 9 cut(s) 22, 311, 482, 493, 819, 872, 1054, 2389, 2614
Lsp1109I GCAGC 7 cut(s) 1202, 1339, 1453, 1624, 2335, 2539, 2553
LweI GCATC 8 cut(s) 382, 1057, 1330, 1372, 1892, 2400, 2563, 2585
MaeI CTAG 3 cut(s) 957, 1314, 2085
MaeII ACGT 6 cut(s) 36, 735, 1645, 1738, 1986, 2052
MaeIII GTNAC 5 cut(s) 119, 945, 1294, 1360, 2188
MalI GATC 5 cut(s) 243, 898, 975, 1074, 1855
MboI GATC 5 cut(s) 241, 896, 973, 1072, 1853
MfeI CAATTG 1 cut(s) 681
MflI RGATCY 2 cut(s) 241, 1853
MhlI GDGCHC 3 cut(s) 478, 824, 1257
MluI ACGCGT 1 cut(s) 187
Mly113I GGCGCC 2 cut(s) 66, 296
MlyI GAGTC 7 cut(s) 83, 116, 122, 128, 134, 140, 1563
MmeI TCCRAC 2 cut(s) 156, 1032
Mph1103I ATGCAT 2 cut(s) 2163, 2578
MreI CGCCGGCG 1 cut(s) 298
MroI TCCGGA 1 cut(s) 308
MroNI GCCGGC 2 cut(s) 292, 298
MseI TTAA 6 cut(s) 336, 543, 705, 1440, 2298, 2400
MslI CAYNNNNRTG 2 cut(s) 453, 1398
MspA1I CMGCKG 4 cut(s) 283, 1485, 2186, 2390
MspCI CTTAAG 1 cut(s) 2399
MspI CCGG 9 cut(s) 86, 233, 293, 299, 309, 315, 1168, 1803, 1857
MspR9I CCNGG 2 cut(s) 316, 1858
MunI CAATTG 1 cut(s) 681
Mva1269I GAATGC 1 cut(s) 448
MvnI CGCG 6 cut(s) 101, 189, 256, 283, 1107, 1485
MwoI GCNNNNNNNGC 6 cut(s) 49, 74, 289, 482, 1349, 1450
NaeI GCCGGC 2 cut(s) 294, 300
NarI GGCGCC 2 cut(s) 66, 296
NciI CCSGG 2 cut(s) 316, 1858
NdeII GATC 5 cut(s) 241, 896, 973, 1072, 1853
NgoMIV GCCGGC 2 cut(s) 292, 298
NlaIV GGNNCC 8 cut(s) 67, 81, 243, 297, 313, 1714, 2254, 2385
NmeAIII GCCGAG 1 cut(s) 78
NmuCI GTSAC 5 cut(s) 119, 945, 1294, 1360, 2188
NruI TCGCGA 1 cut(s) 1107
NsiI ATGCAT 2 cut(s) 2163, 2578
NspI RCATGY 3 cut(s) 643, 1799, 2105
PaeR7I CTCGAG 2 cut(s) 1008, 1571
PagI TCATGA 2 cut(s) 1528, 2344
PciI ACATGT 2 cut(s) 1795, 2101
PciSI GCTCTTC 1 cut(s) 1879
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PctI GAATGC 1 cut(s) 448
PdiI GCCGGC 2 cut(s) 294, 300
PflMI CCANNNNNTGG 1 cut(s) 912
PleI GAGTC 7 cut(s) 83, 116, 122, 128, 134, 140, 1563
PluTI GGCGCC 2 cut(s) 69, 299
PpsI GAGTC 7 cut(s) 83, 116, 122, 128, 134, 140, 1563
PscI ACATGT 2 cut(s) 1795, 2101
PspEI GGTNACC 1 cut(s) 945
PspFI CCCAGC 3 cut(s) 362, 905, 1963
PspN4I GGNNCC 8 cut(s) 67, 81, 243, 297, 313, 1714, 2254, 2385
PspPI GGNCC 2 cut(s) 418, 2180
PspXI VCTCGAGB 2 cut(s) 1008, 1571
PstI CTGCAG 2 cut(s) 1471, 2571
PsuI RGATCY 2 cut(s) 241, 1853
PvuII CAGCTG 2 cut(s) 2186, 2390
RruI TCGCGA 1 cut(s) 1107
RsaI GTAC 7 cut(s) 715, 884, 1318, 1552, 1714, 1819, 2239
RsaNI GTAC 7 cut(s) 714, 883, 1317, 1551, 1713, 1818, 2238
RseI CAYNNNNRTG 2 cut(s) 453, 1398
SacII CCGCGG 2 cut(s) 284, 1486
SapI GCTCTTC 1 cut(s) 1879
SaqAI TTAA 6 cut(s) 336, 543, 705, 1440, 2298, 2400
Sau3AI GATC 5 cut(s) 241, 896, 973, 1072, 1853
Sau96I GGNCC 2 cut(s) 418, 2180
ScaI AGTACT 1 cut(s) 1318
SchI GAGTC 7 cut(s) 83, 116, 122, 128, 134, 140, 1563
ScrFI CCNGG 2 cut(s) 316, 1858
SduI GDGCHC 3 cut(s) 478, 824, 1257
SfaNI GCATC 8 cut(s) 382, 1057, 1330, 1372, 1892, 2400, 2563, 2585
SfcI CTRYAG 2 cut(s) 1467, 2567
SfoI GGCGCC 2 cut(s) 67, 297
Sfr274I CTCGAG 2 cut(s) 1008, 1571
Sfr303I CCGCGG 2 cut(s) 284, 1486
SgrAI CRCCGGYG 1 cut(s) 298
SgrBI CCGCGG 2 cut(s) 284, 1486
SinI GGWCC 2 cut(s) 418, 2180
SlaI CTCGAG 2 cut(s) 1008, 1571
SmiMI CAYNNNNRTG 2 cut(s) 453, 1398
SmlI CTYRAG 4 cut(s) 938, 1008, 1571, 2399
SmoI CTYRAG 4 cut(s) 938, 1008, 1571, 2399
SspDI GGCGCC 2 cut(s) 65, 295
SspMI CTAG 3 cut(s) 957, 1314, 2085
StyD4I CCNGG 2 cut(s) 314, 1856
StyI CCWWGG 2 cut(s) 1000, 1335
TaaI ACNGT 7 cut(s) 841, 1050, 1137, 1360, 1712, 1822, 2498
TaiI ACGT 6 cut(s) 39, 738, 1648, 1741, 1989, 2055
TaqI TCGA 4 cut(s) 1009, 1218, 1432, 1572
TatI WGTACW 3 cut(s) 1316, 1817, 2237
TauI GCSGC 6 cut(s) 43, 85, 283, 1210, 1456, 1485
Tru1I TTAA 6 cut(s) 336, 543, 705, 1440, 2298, 2400
Tru9I TTAA 6 cut(s) 336, 543, 705, 1440, 2298, 2400
TscAI CASTG 2 cut(s) 532, 1827
TseFI GTSAC 5 cut(s) 119, 945, 1294, 1360, 2188
TseI GCWGC 7 cut(s) 1190, 1352, 1466, 1637, 2323, 2527, 2566
Tsp45I GTSAC 5 cut(s) 119, 945, 1294, 1360, 2188
TspDTI ATGAA 9 cut(s) 422, 629, 876, 1007, 1056, 1125, 2129, 2361, 2556
TspGWI ACGGA 3 cut(s) 588, 1748, 2531
TspRI CASTG 2 cut(s) 532, 1827
Van91I CCANNNNNTGG 1 cut(s) 912
Vha464I CTTAAG 1 cut(s) 2399
VpaK11BI GGWCC 2 cut(s) 418, 2180
XapI RAATTY 2 cut(s) 582, 922
XbaI TCTAGA 1 cut(s) 956
XceI RCATGY 3 cut(s) 643, 1799, 2105
XhoI CTCGAG 2 cut(s) 1008, 1571
XmiI GTMKAC 1 cut(s) 1610
XspI CTAG 3 cut(s) 957, 1314, 2085
ZrmI AGTACT 1 cut(s) 1318
Zsp2I ATGCAT 2 cut(s) 2163, 2578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.