RLG00000003305

SNF2 domain-containing protein CLASSY

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
46937942 .. 46942694
4753 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003305

Sequence Viewer

Length: 3216 bp
ATGTTTGACTATAGCTTGCCTATAGCTAGTAGAACAAGGAAGGGGCAGGAGAGAGTTTACAAGGAGTTCAATGAAAAAAAGAAGGAGAAGAAGAAGAATGAGGGTGGCTCGGCGCCCGCTGATTTTGCAAAATTGGGGTCTGAATGCATAGTTCTTTCAGATGATAGCATGGAGGATGGCGATTCAGACGGTTCTGATTTAGAAAAGAGTGCTACAAAGAGAAGTGAGAAGGTCGGAAAGGGGGGGAGTGTGGAGGTTGGACGTGTTGAGACTAACACCAATTCTGTGGCTGATTTTGATGATGATGACAGTGAAGGTGTGAAAGTCATTAGTTTGGTTAGTGACAGTGATGATGAGGCAGTGTCAATAAGTGAAGAGGGAGGTGGAGGAGACTCTGACAGTGATAAGGACAGTGATTCAGGAAGTGTAGATTCCGATGATGAACATAATGTACACTTGGCTGATGAAGATGAAGATGATATTGAAAGCATCTCTTCAGATGATAGCGCAAGTGATCCTTCGAATGATGAGGGACCTGTTAAATTAGATTGTGAAAGTGAGGATGTAGAGAGAAGTGGGGGAGAGGGAGAAAGAGTTGGTATTTGTCAAAAGAGAAAGAGAAACATTGGAGAGGATGGTCAAAAGTTCAATTGTGTAGCACACCGTACTCGGTCACGGTCTACATCTCATTCTTCTGGCAATGATGATCAGAGGGATGATGTTGATGACAATTACTGCAGTAGTCAGACAAATAGGCGTCCTAAAATGAATTCAAAGTGCAACAATAGAAGAAGTGGTGACAATGATGAGACCTATGCTTGCAGTCTGAACAGTGGGCGTGATAAATGGAATGATGTGCAGAAAGCATCTCAAAAGAATGCAGGGCTGAGGAAGCTTACTAAGAAAAAGTGCACCAGGGGAAAAATAGATGCCACTGCTTACAAAATTCTTTCAGATTCAATTTATGAGGATGGAGAATTGCCCCCAGAAGGGTCAGCTTCCGTCGGGGATAAAGAAGTTAAAAATGGAACTCTTCCGTCGAAGTTCTCATTTGGTGAGCCGCCAAGTATTGTTCCAGTAGAGAAGTCAGATTGTGAGAAAGAACTAGAGAACCTTTTTAAAGAAATGGAATTTGCTATTAGATCTGCTCAAATTGGTTCTACTGCCTCTAGTGAGGTTGAAATTAATGACACAGTCCCTCCAGTTAAGGAAGTTACTCAGCATATGCTTTGTAGTCAAGGGAAACATCATCTTATACTTGATGAAGAAGTTGGACTGATTTGCAAATTTTGCCCTCATGTGCATCAGGAGATCAAGTATATTGTACCAGACTTTGCTCCGAACCCTTATGGACGATCTGGCAGGAGATTTTATGAAGAAGACAATCGGTCTATTCCTGATGAGCTACAGTGTCATGACTCTGGGTCTGGCTTTAATTCCCATGCTCATGTTGATGGCACGGTATGGGACTTAATTCCTGGTGTTAAAAGTAGTGTGTATCCTCATCAGCGTGCGGGTTTTGAATTTATTTGGAATCATATAGCTGGTGGAATTCATCTTGAAAAGTTGCAGAAGACAAGTAGTGCTGATGGTGGGGGTGGATGCATAATTTCACATGCACCTGGAACAGGGAAGACACGTCTGACCATTGTCTTTCTTCAGGCATACATGAGATTTAACCCAAAATGCAGGCCACTTATAATTGCTCCTCGTACCATGCTTCTCACCTGGGAAGAGGAGTTTAAAAAATGGGGCTTCGATGTTCCCTTTCACAATCTCAACAATCAGAGTTTATCCGGGAAGGAGAATAAAGCAGCTCTCAAGATTTTGGTGCAAGATGGAGGCCAGCGCCATGTGAAAAGTGTGGATGGTAGTCGTTGGTTGAAGTTATATTCCTGGAACAAGGAAAGAAGCATCCTTGGAATTAGTTACAGACTTTTTGAGAAACTTTCTACTGCGCATAATTCTGGAGGCAAGAAAGCTGACCTAGCTAAGACAATGAGGAATATTCTATTAGACTTTCCTGGTATTGTAGTCTTTGATGAAGGGCATACACCTCGAAATGATAAGAGTCATATGTGGAAGGCTTCATCAAATATCAAAACATATAGACGTATTATTCTCTCAGGAACTCCTTTTCAAAACAATTTTGATGAGCTGTACAATACAATTTGCTTGGCAAGGCCAGACTGGATCCGGCCTACATGCAGTGGACGAAGCCAAAAAAGAAATGTAGTGAAAGCGCAACAGATGTCTCTGGCCAAATACATTGCCAAAGGTGCTGGTGATAAAGCAAAACAAGCTGAGGAAATAGGAGCTAGAATTGCCCCAATTGTGCATGTTTACAGAGGTTCCATACTACAAGATACACTTCCCGGGTTGAGGAACTCGATTGTTGTTTTACAGCCAAGCAAGTTACAGAAAGAAATTTCTACAAGAATTCAAGAGAGGAAGGATCTTCCATTCTTTAAAGATGAACATTACGAGACTTTAATATCTGTTCATCCTTCGGCTTTGCTGAACCTGGAGAAGGAAAAGAGGGTATCCTTGCTTAATCAGGTCGACTTGGAGAGGTTAAAGGAAAAAAGATTAAATCCTGAATCTGGGATGAAGGCAAAGTTTGTGAATGAACTCGTACGGCTTAGTGATGCTATGAATGAAAGAGTCCTGGTGTTCAGTCAGTATATTAATGCCCTGACCTTTTTAAGGGAGCTTTTGAAATCTCAGTTTCAATGGACTGAAGGGGAAGAGATACTTTATATGTATGGAGCAGATGATGAAAAGCAGCGCCAAACATCAATGAAGGCTTTCAATGATCCATCAAGCAGAGCCAAGGTATTATTAGCCTCAACAAAAGGTTGTAATGAAGGAATAAATTTAGTTGGAGCTTCAAGGGTTGTGCTGCTTGATGTTACATGGAACCCATCTGTCGAGAGGCAAGCTATATCCCGAGCATACCGATTGGGACAGAAGAAAATTGTGTTCATCTACCATCTTCTCATTGCTGGGGCAAGAGAAGAGGACAAACACAGTAGGCAAGTTGAGAAGCATCATCTGTCTGAATTGGTATTTTCTTGTTCGGATACGGAAGCTGCCAAGAAAATCCCAGCTGCAGTCGCGGAGGACAAGATTTTGGAAGAGATGGTTCAGCATGAGAAACTCAAGCATATATTTGAAAAGATAACATTACTGGATGAAGCCTCATGTTTTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1072

Amino Acids

119.73

Weight (kDa)

5.96

Isoelectric Point (pI)

44.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 500 - 713 1.3e-08 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 531 - 842 3e-21 SNF2-related domain
Helicase_C PF00271 872 - 989 1.1e-17 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1700
Acc16I TGCGCA 1 cut(s) 1959
AccB1I GGYRCC 1 cut(s) 112
AccI GTMKAC 2 cut(s) 680, 2562
AccII CGCG 1 cut(s) 3119
AciI CCGC 4 cut(s) 117, 1061, 1514, 3119
AclWI GGATC 5 cut(s) 509, 2188, 2201, 2463, 2810
AcoI YGGCCR 1 cut(s) 2259
AcsI RAATTY 9 cut(s) 769, 945, 1130, 1286, 1523, 1551, 2427, 2439, 2875
AcuI CTGAAG 3 cut(s) 480, 1643, 2760
AcyI GRCGYC 2 cut(s) 113, 757
AfaI GTAC 6 cut(s) 453, 667, 1326, 1714, 2162, 2637
AfiI CCNNNNNNNGG 7 cut(s) 989, 990, 1628, 2382, 2530, 2603, 2706
AflIII ACRYGT 2 cut(s) 262, 1637
AhdI GACNNNNNGTC 2 cut(s) 1387, 1423
AjiI CACGTC 2 cut(s) 263, 1640
AjnI CCWGG 8 cut(s) 914, 1477, 1621, 1727, 1895, 2023, 2523, 2667
Alw21I GWGCWC 1 cut(s) 914
Alw26I GTCTC 5 cut(s) 263, 384, 803, 2259, 2480
Alw44I GTGCAC 1 cut(s) 910
AlwI GGATC 5 cut(s) 509, 2188, 2201, 2463, 2810
Ama87I CYCGRG 2 cut(s) 2375, 2949
AoxI GGCC 5 cut(s) 1691, 1843, 2183, 2198, 2259
ApaLI GTGCAC 1 cut(s) 910
ApeKI GCWGC 5 cut(s) 1814, 2785, 2902, 3092, 3110
ApoI RAATTY 9 cut(s) 769, 945, 1130, 1286, 1523, 1551, 2427, 2439, 2875
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AseI ATTAAT 2 cut(s) 1185, 2688
Asp700I GAANNNNTTC 1 cut(s) 2807
AspLEI GCGC 6 cut(s) 115, 509, 1851, 1960, 2245, 2790
AspS9I GGNCC 1 cut(s) 533
AsuC2I CCSGG 3 cut(s) 1798, 2376, 2377
AsuHPI GGTGA 4 cut(s) 809, 1067, 1717, 2297
AsuII TTCGAA 1 cut(s) 521
AvaI CYCGRG 2 cut(s) 2375, 2949
AvaII GGWCC 1 cut(s) 533
BaeGI GKGCMC 1 cut(s) 914
BalI TGGCCA 1 cut(s) 2261
BamHI GGATCC 1 cut(s) 2193
BanI GGYRCC 1 cut(s) 112
BbsI GAAGAC 3 cut(s) 1386, 1580, 1640
Bbv12I GWGCWC 1 cut(s) 914
BbvCI CCTCAGC 2 cut(s) 887, 2304
BbvI GCAGC 5 cut(s) 1826, 2797, 2889, 3079, 3097
BceAI ACGGC 1 cut(s) 2654
BcgI CGANNNNNNTGC 2 cut(s) 2039, 2073
BciT130I CCWGG 8 cut(s) 916, 1479, 1623, 1729, 1897, 2025, 2525, 2669
BciVI GTATCC 3 cut(s) 1509, 2554, 3076
BclI TGATCA 1 cut(s) 706
BcnI CCSGG 3 cut(s) 1798, 2376, 2377
BcoDI GTCTC 5 cut(s) 263, 384, 803, 2259, 2480
BfaI CTAG 5 cut(s) 27, 1106, 1170, 1988, 2319
BfmI CTRYAG 5 cut(s) 10, 21, 736, 1406, 3111
BfoI RGCGCY 3 cut(s) 116, 1852, 2791
BfuI GTATCC 3 cut(s) 1509, 2554, 3076
BglII AGATCT 1 cut(s) 1142
BisI GCNGC 6 cut(s) 1061, 1815, 2786, 2903, 3093, 3111
BlsI GCNGC 6 cut(s) 1062, 1816, 2787, 2904, 3094, 3112
Bme18I GGWCC 1 cut(s) 533
BmeRI GACNNNNNGTC 2 cut(s) 1387, 1423
BmeT110I CYCGRG 2 cut(s) 2375, 2949
BmgBI CACGTC 2 cut(s) 263, 1640
BmgT120I GGNCC 1 cut(s) 533
BmiI GGNNCC 5 cut(s) 114, 534, 2195, 2353, 2921
BmsI GCATC 8 cut(s) 498, 875, 919, 1312, 1592, 1923, 2638, 3058
BoxI GACNNNNGTC 1 cut(s) 1649
BpiI GAAGAC 3 cut(s) 1386, 1580, 1640
BplI GAGNNNNNCTC 2 cut(s) 92, 124
BpmI CTGGAG 3 cut(s) 1185, 1989, 2546
Bpu10I CCTNAGC 2 cut(s) 887, 2304
Bpu14I TTCGAA 1 cut(s) 521
BpuEI CTTGAG 2 cut(s) 1805, 3146
BpuMI CCSGG 3 cut(s) 1798, 2376, 2377
BsaHI GRCGYC 2 cut(s) 113, 757
BsaI GGTCTC 1 cut(s) 803
BsaJI CCNNGG 5 cut(s) 915, 1728, 1918, 2375, 2832
BsaXI ACNNNNNCTCC 6 cut(s) 579, 609, 1183, 1213, 1301, 1331
Bsc4I CCNNNNNNNGG 7 cut(s) 989, 990, 1628, 2382, 2530, 2603, 2706
Bse1I ACTGG 4 cut(s) 1076, 1202, 2195, 3195
Bse3DI GCAATG 3 cut(s) 706, 2268, 3000
BseBI CCWGG 8 cut(s) 916, 1479, 1623, 1729, 1897, 2025, 2525, 2669
BseDI CCNNGG 5 cut(s) 915, 1728, 1918, 2375, 2832
BseLI CCNNNNNNNGG 7 cut(s) 989, 990, 1628, 2382, 2530, 2603, 2706
BseMI GCAATG 3 cut(s) 706, 2268, 3000
BseMII CTCAG 5 cut(s) 878, 1232, 2139, 2295, 2738
BseNI ACTGG 4 cut(s) 1076, 1202, 2195, 3195
BseRI GAGGAG 3 cut(s) 402, 1698, 1751
BseSI GKGCMC 1 cut(s) 914
BseXI GCAGC 5 cut(s) 1826, 2797, 2889, 3079, 3097
BseYI CCCAGC 2 cut(s) 3005, 3106
BsgI GTGCAG 1 cut(s) 878
Bsh1236I CGCG 1 cut(s) 3119
BshFI GGCC 5 cut(s) 1693, 1845, 2185, 2200, 2261
BshNI GGYRCC 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 914
BsiHKCI CYCGRG 2 cut(s) 2375, 2949
BsiSI CCGG 3 cut(s) 1797, 2197, 2376
BsiWI CGTACG 1 cut(s) 2635
BslFI GGGAC 4 cut(s) 546, 1181, 1481, 2979
BslI CCNNNNNNNGG 7 cut(s) 989, 990, 1628, 2382, 2530, 2603, 2706
BsmAI GTCTC 5 cut(s) 263, 384, 803, 2259, 2480
BsmFI GGGAC 4 cut(s) 546, 1181, 1481, 2979
BsmI GAATGC 2 cut(s) 149, 883
BsnI GGCC 5 cut(s) 1693, 1845, 2185, 2200, 2261
Bso31I GGTCTC 1 cut(s) 803
BsoBI CYCGRG 2 cut(s) 2375, 2949
Bsp119I TTCGAA 1 cut(s) 521
Bsp1286I GDGCHC 1 cut(s) 914
Bsp1407I TGTACA 2 cut(s) 451, 2160
Bsp143I GATC 8 cut(s) 514, 706, 1142, 1311, 1355, 2193, 2455, 2815
BspACI CCGC 4 cut(s) 117, 1061, 1514, 3119
BspANI GGCC 5 cut(s) 1693, 1845, 2185, 2200, 2261
BspCNI CTCAG 5 cut(s) 879, 1231, 2138, 2296, 2737
BspFNI CGCG 1 cut(s) 3119
BspHI TCATGA 1 cut(s) 1414
BspLI GGNNCC 5 cut(s) 114, 534, 2195, 2353, 2921
BspMAI CTGCAG 2 cut(s) 740, 3115
BspPI GGATC 5 cut(s) 509, 2188, 2201, 2463, 2810
BspT104I TTCGAA 1 cut(s) 521
BspT107I GGYRCC 1 cut(s) 112
BspTNI GGTCTC 1 cut(s) 803
BsrDI GCAATG 3 cut(s) 706, 2268, 3000
BsrGI TGTACA 2 cut(s) 451, 2160
BsrI ACTGG 4 cut(s) 1076, 1202, 2195, 3195
BssECI CCNNGG 5 cut(s) 915, 1728, 1918, 2375, 2832
BssMI GATC 8 cut(s) 514, 706, 1142, 1311, 1355, 2193, 2455, 2815
BssNI GRCGYC 2 cut(s) 113, 757
BssT1I CCWWGG 2 cut(s) 1918, 2832
Bst2UI CCWGG 8 cut(s) 916, 1479, 1623, 1729, 1897, 2025, 2525, 2669
Bst6I CTCTTC 7 cut(s) 369, 499, 1038, 1728, 2742, 3012, 3132
BstACI GRCGYC 2 cut(s) 113, 757
BstAPI GCANNNNNTGC 1 cut(s) 1290
BstAUI TGTACA 2 cut(s) 451, 2160
BstBI TTCGAA 1 cut(s) 521
BstC8I GCNNGC 7 cut(s) 17, 117, 820, 1512, 1691, 1847, 2940
BstDEI CTNAG 8 cut(s) 887, 900, 1218, 1992, 2125, 2304, 2642, 2724
BstENI CCTNNNNNAGG 3 cut(s) 1626, 2528, 2704
BstFNI CGCG 1 cut(s) 3119
BstH2I RGCGCY 3 cut(s) 116, 1852, 2791
BstHHI GCGC 6 cut(s) 115, 509, 1851, 1960, 2245, 2790
BstKTI GATC 8 cut(s) 517, 709, 1145, 1314, 1358, 2196, 2458, 2818
BstMAI GTCTC 5 cut(s) 263, 384, 803, 2259, 2480
BstMBI GATC 8 cut(s) 514, 706, 1142, 1311, 1355, 2193, 2455, 2815
BstMWI GCNNNNNNNGC 8 cut(s) 125, 892, 1290, 1988, 2279, 2300, 2324, 3116
BstNI CCWGG 8 cut(s) 916, 1479, 1623, 1729, 1897, 2025, 2525, 2669
BstNSI RCATGY 3 cut(s) 1619, 2208, 2342
BstPAI GACNNNNGTC 1 cut(s) 1649
BstSFI CTRYAG 5 cut(s) 10, 21, 736, 1406, 3111
BstSLI GKGCMC 1 cut(s) 914
BstUI CGCG 1 cut(s) 3119
BstV1I GCAGC 5 cut(s) 1826, 2797, 2889, 3079, 3097
BstV2I GAAGAC 3 cut(s) 1386, 1580, 1640
BstX2I RGATCY 3 cut(s) 1142, 2193, 2455
BstXI CCANNNNNNTGG 1 cut(s) 286
BstYI RGATCY 3 cut(s) 1142, 2193, 2455
BsuI GTATCC 3 cut(s) 1509, 2554, 3076
BsuRI GGCC 5 cut(s) 1693, 1845, 2185, 2200, 2261
BtrI CACGTC 2 cut(s) 263, 1640
BtsI GCAGTG 3 cut(s) 366, 933, 2215
BtsIMutI CAGTG 9 cut(s) 316, 352, 366, 406, 418, 838, 933, 1415, 2215
Cac8I GCNNGC 7 cut(s) 17, 117, 820, 1512, 1691, 1847, 2940
CciI TCATGA 1 cut(s) 1414
CfoI GCGC 6 cut(s) 115, 509, 1851, 1960, 2245, 2790
Cfr13I GGNCC 1 cut(s) 533
Cfr9I CCCGGG 1 cut(s) 2375
CseI GACGC 1 cut(s) 746
Csp6I GTAC 6 cut(s) 452, 666, 1325, 1713, 2161, 2636
CviQI GTAC 6 cut(s) 452, 666, 1325, 1713, 2161, 2636
DdeI CTNAG 8 cut(s) 887, 900, 1218, 1992, 2125, 2304, 2642, 2724
DinI GGCGCC 1 cut(s) 114
DpnI GATC 8 cut(s) 516, 708, 1144, 1313, 1357, 2195, 2457, 2817
DpnII GATC 8 cut(s) 514, 706, 1142, 1311, 1355, 2193, 2455, 2815
DraI TTTAAA 3 cut(s) 1120, 1744, 2470
DriI GACNNNNNGTC 2 cut(s) 1387, 1423
EaeI YGGCCR 1 cut(s) 2259
Eam1104I CTCTTC 7 cut(s) 369, 499, 1038, 1728, 2742, 3012, 3132
Eam1105I GACNNNNNGTC 2 cut(s) 1387, 1423
EarI CTCTTC 7 cut(s) 369, 499, 1038, 1728, 2742, 3012, 3132
Eco130I CCWWGG 2 cut(s) 1918, 2832
Eco31I GGTCTC 1 cut(s) 803
Eco47I GGWCC 1 cut(s) 533
Eco57I CTGAAG 3 cut(s) 480, 1643, 2760
Eco88I CYCGRG 2 cut(s) 2375, 2949
EcoNI CCTNNNNNAGG 3 cut(s) 1626, 2528, 2704
EcoO109I RGGNCCY 1 cut(s) 533
EcoRI GAATTC 3 cut(s) 769, 1551, 2439
EcoRII CCWGG 8 cut(s) 914, 1477, 1621, 1727, 1895, 2023, 2523, 2667
EcoT14I CCWWGG 2 cut(s) 1918, 2832
EcoT22I ATGCAT 2 cut(s) 149, 1607
EgeI GGCGCC 1 cut(s) 114
EheI GGCGCC 1 cut(s) 114
ErhI CCWWGG 2 cut(s) 1918, 2832
FalI AAGNNNNNCTT 8 cut(s) 478, 510, 502, 534, 2355, 2387, 2739, 2771
FaqI GGGAC 4 cut(s) 546, 1181, 1481, 2979
FauI CCCGC 2 cut(s) 124, 1507
FauNDI CATATG 2 cut(s) 1224, 2076
FbaI TGATCA 1 cut(s) 706
FblI GTMKAC 2 cut(s) 680, 2562
Fnu4HI GCNGC 6 cut(s) 1061, 1815, 2786, 2903, 3093, 3111
Fsp4HI GCNGC 6 cut(s) 1061, 1815, 2786, 2903, 3093, 3111
FspBI CTAG 5 cut(s) 27, 1106, 1170, 1988, 2319
FspI TGCGCA 1 cut(s) 1959
GlaI GCGC 6 cut(s) 114, 508, 1850, 1959, 2244, 2789
GluI GCNGC 6 cut(s) 1061, 1815, 2786, 2903, 3093, 3111
GsaI CCCAGC 2 cut(s) 3009, 3110
GsuI CTGGAG 3 cut(s) 1185, 1989, 2546
HaeII RGCGCY 3 cut(s) 116, 1852, 2791
HaeIII GGCC 5 cut(s) 1693, 1845, 2185, 2200, 2261
HapII CCGG 3 cut(s) 1797, 2197, 2376
HgaI GACGC 1 cut(s) 746
HhaI GCGC 6 cut(s) 115, 509, 1851, 1960, 2245, 2790
Hin1I GRCGYC 2 cut(s) 113, 757
Hin6I GCGC 6 cut(s) 113, 507, 1849, 1958, 2243, 2788
HinP1I GCGC 6 cut(s) 113, 507, 1849, 1958, 2243, 2788
HincII GTYRAC 1 cut(s) 2563
HindII GTYRAC 1 cut(s) 2563
HindIII AAGCTT 1 cut(s) 893
HpaII CCGG 3 cut(s) 1797, 2197, 2376
HphI GGTGA 4 cut(s) 809, 1067, 1717, 2297
Hpy166II GTNNAC 7 cut(s) 58, 454, 681, 912, 2213, 2344, 2563
Hpy8I GTNNAC 7 cut(s) 58, 454, 681, 912, 2213, 2344, 2563
Hpy99I CGWCG 2 cut(s) 1007, 1042
HpyCH4IV ACGT 3 cut(s) 262, 1639, 2113
HpyF10VI GCNNNNNNNGC 8 cut(s) 125, 892, 1290, 1988, 2279, 2300, 2324, 3116
HpyF3I CTNAG 8 cut(s) 887, 900, 1218, 1992, 2125, 2304, 2642, 2724
HpySE526I ACGT 3 cut(s) 262, 1639, 2113
Hsp92I GRCGYC 2 cut(s) 113, 757
HspAI GCGC 6 cut(s) 113, 507, 1849, 1958, 2243, 2788
KasI GGCGCC 1 cut(s) 112
Ksp22I TGATCA 1 cut(s) 706
Kzo9I GATC 8 cut(s) 514, 706, 1142, 1311, 1355, 2193, 2455, 2815
LmnI GCTCC 6 cut(s) 1342, 1711, 2315, 2710, 2768, 2885
Lsp1109I GCAGC 5 cut(s) 1826, 2797, 2889, 3079, 3097
LweI GCATC 8 cut(s) 498, 875, 919, 1312, 1592, 1923, 2638, 3058
MaeI CTAG 5 cut(s) 27, 1106, 1170, 1988, 2319
MaeII ACGT 3 cut(s) 262, 1639, 2113
MaeIII GTNAC 7 cut(s) 341, 672, 797, 1213, 1928, 2415, 2911
MalI GATC 8 cut(s) 516, 708, 1144, 1313, 1357, 2195, 2457, 2817
MboI GATC 8 cut(s) 514, 706, 1142, 1311, 1355, 2193, 2455, 2815
MfeI CAATTG 2 cut(s) 649, 2331
MflI RGATCY 3 cut(s) 1142, 2193, 2455
MhlI GDGCHC 1 cut(s) 914
MlsI TGGCCA 1 cut(s) 2261
MluNI TGGCCA 1 cut(s) 2261
Mly113I GGCGCC 1 cut(s) 113
MlyI GAGTC 4 cut(s) 386, 1412, 2080, 2673
MmeI TCCRAC 4 cut(s) 214, 238, 1252, 2863
Mox20I TGGCCA 1 cut(s) 2261
Mph1103I ATGCAT 2 cut(s) 149, 1607
MroXI GAANNNNTTC 1 cut(s) 2807
MscI TGGCCA 1 cut(s) 2261
MslI CAYNNNNRTG 3 cut(s) 1446, 1452, 1509
Msp20I TGGCCA 1 cut(s) 2261
MspA1I CMGCKG 2 cut(s) 119, 3110
MspI CCGG 3 cut(s) 1797, 2197, 2376
MunI CAATTG 2 cut(s) 649, 2331
Mva1269I GAATGC 2 cut(s) 149, 883
MvaI CCWGG 8 cut(s) 916, 1479, 1623, 1729, 1897, 2025, 2525, 2669
MvnI CGCG 1 cut(s) 3119
MwoI GCNNNNNNNGC 8 cut(s) 125, 892, 1290, 1988, 2279, 2300, 2324, 3116
NarI GGCGCC 1 cut(s) 113
NciI CCSGG 3 cut(s) 1798, 2376, 2377
NdeI CATATG 2 cut(s) 1224, 2076
NdeII GATC 8 cut(s) 514, 706, 1142, 1311, 1355, 2193, 2455, 2815
NlaIV GGNNCC 5 cut(s) 114, 534, 2195, 2353, 2921
NmeAIII GCCGAG 1 cut(s) 89
NmuCI GTSAC 3 cut(s) 341, 672, 797
NsbI TGCGCA 1 cut(s) 1959
NsiI ATGCAT 2 cut(s) 149, 1607
NspI RCATGY 3 cut(s) 1619, 2208, 2342
NspV TTCGAA 1 cut(s) 521
PagI TCATGA 1 cut(s) 1414
PctI GAATGC 2 cut(s) 149, 883
PdmI GAANNNNTTC 1 cut(s) 2807
PfeI GAWTC 6 cut(s) 182, 416, 431, 956, 1534, 2600
Pfl23II CGTACG 1 cut(s) 2635
PflFI GACNNNGTC 1 cut(s) 1193
PfoI TCCNGGA 2 cut(s) 1796, 1895
PkrI GCNGC 6 cut(s) 1062, 1816, 2787, 2904, 3094, 3112
PleI GAGTC 4 cut(s) 386, 1412, 2079, 2672
PluTI GGCGCC 1 cut(s) 116
PpsI GAGTC 4 cut(s) 386, 1412, 2079, 2672
PpuMI RGGWCCY 1 cut(s) 533
PshAI GACNNNNGTC 1 cut(s) 1649
PshBI ATTAAT 2 cut(s) 1185, 2688
PsiI TTATAA 1 cut(s) 1700
Psp5II RGGWCCY 1 cut(s) 533
Psp6I CCWGG 8 cut(s) 914, 1477, 1621, 1727, 1895, 2023, 2523, 2667
PspFI CCCAGC 2 cut(s) 3005, 3106
PspGI CCWGG 8 cut(s) 914, 1477, 1621, 1727, 1895, 2023, 2523, 2667
PspLI CGTACG 1 cut(s) 2635
PspN4I GGNNCC 5 cut(s) 114, 534, 2195, 2353, 2921
PspPI GGNCC 1 cut(s) 533
PspPPI RGGWCCY 1 cut(s) 533
PsrI GAACNNNNNNTAC 2 cut(s) 435, 467
PstI CTGCAG 2 cut(s) 740, 3115
PsuI RGATCY 3 cut(s) 1142, 2193, 2455
PsyI GACNNNGTC 1 cut(s) 1193
PvuII CAGCTG 1 cut(s) 3110
RsaI GTAC 6 cut(s) 453, 667, 1326, 1714, 2162, 2637
RsaNI GTAC 6 cut(s) 452, 666, 1325, 1713, 2161, 2636
RseI CAYNNNNRTG 3 cut(s) 1446, 1452, 1509
SalI GTCGAC 1 cut(s) 2561
SatI GCNGC 6 cut(s) 1061, 1815, 2786, 2903, 3093, 3111
Sau3AI GATC 8 cut(s) 514, 706, 1142, 1311, 1355, 2193, 2455, 2815
Sau96I GGNCC 1 cut(s) 533
SchI GAGTC 4 cut(s) 386, 1412, 2080, 2673
SduI GDGCHC 1 cut(s) 914
SfaNI GCATC 8 cut(s) 498, 875, 919, 1312, 1592, 1923, 2638, 3058
SfcI CTRYAG 5 cut(s) 10, 21, 736, 1406, 3111
SfoI GGCGCC 1 cut(s) 114
SfuI TTCGAA 1 cut(s) 521
SinI GGWCC 1 cut(s) 533
SmaI CCCGGG 1 cut(s) 2377
SmiMI CAYNNNNRTG 3 cut(s) 1446, 1452, 1509
SmlI CTYRAG 2 cut(s) 1820, 3161
SmoI CTYRAG 2 cut(s) 1820, 3161
SsiI CCGC 4 cut(s) 117, 1061, 1514, 3119
SspDI GGCGCC 1 cut(s) 112
SspI AATATT 1 cut(s) 2008
SspMI CTAG 5 cut(s) 27, 1106, 1170, 1988, 2319
StyI CCWWGG 2 cut(s) 1918, 2832
TaiI ACGT 3 cut(s) 265, 1642, 2116
TaqI TCGA 7 cut(s) 521, 1040, 1758, 2059, 2390, 2562, 2931
TaqII GACCGA 2 cut(s) 660, 1377
TatI WGTACW 2 cut(s) 451, 2160
TauI GCSGC 1 cut(s) 1063
TfiI GAWTC 6 cut(s) 182, 416, 431, 956, 1534, 2600
TscAI CASTG 9 cut(s) 316, 352, 366, 406, 418, 838, 940, 1415, 2215
TseFI GTSAC 3 cut(s) 341, 672, 797
TseI GCWGC 5 cut(s) 1814, 2785, 2902, 3092, 3110
Tsp45I GTSAC 3 cut(s) 341, 672, 797
TspGWI ACGGA 3 cut(s) 991, 1026, 3101
TspMI CCCGGG 1 cut(s) 2375
TspRI CASTG 9 cut(s) 316, 352, 366, 406, 418, 838, 940, 1415, 2215
Tth111I GACNNNGTC 1 cut(s) 1193
VneI GTGCAC 1 cut(s) 910
VpaK11BI GGWCC 1 cut(s) 533
VspI ATTAAT 2 cut(s) 1185, 2688
XagI CCTNNNNNAGG 3 cut(s) 1626, 2528, 2704
XapI RAATTY 9 cut(s) 769, 945, 1130, 1286, 1523, 1551, 2427, 2439, 2875
XceI RCATGY 3 cut(s) 1619, 2208, 2342
XmaI CCCGGG 1 cut(s) 2375
XmiI GTMKAC 2 cut(s) 680, 2562
XmnI GAANNNNTTC 1 cut(s) 2807
XspI CTAG 5 cut(s) 27, 1106, 1170, 1988, 2319
Zsp2I ATGCAT 2 cut(s) 149, 1607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.