Rh2AG477300

SNF2 domain-containing protein CLASSY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001072
Physical Location & Seq
Reverse (-)
69664296 .. 69674040
9745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG477300.1

Sequence Viewer

Length: 4077 bp
ATGTTTCACGTGCTCCCCTCTCCCAACGACTCAAATGGTTCAATTACTTTGACTGAAGCTCAACCGAGAAAGAAGACGGCGTCGCCAATGGCTTTGATGCCATTGAATTTCACTAACCTCCGTAACAACGAATCAGCCCTCAGGACTCCACACTTTCTTGTAGATAAGTCTATGGATTATAGGCCTGTATCAAGCAGAACAAGGTCGAAGAGAGACAAAGCTATCATTGAACGTCATTGGGAAATGAAAATTAACAGTGGGGTGAGTCCAGCCTCAAGGGATAAGAAAATTAGGAGGTCCAACCAGGCTTCTGTTTCTCATATGGGTGAGTCCAGTTCTAGGAGACAGAGTTTTGAGTGGGTTGCTGATCATGTGGAATCCCTGGAAAACCAACAGAATGATGATGATTCAGAGAGTGTTATAAAAAGAAGTGGGAAACAGGGAAAGGGGAAAAGAGTTGCGGTTGGTGTGAAGAGAAAGAGGAGTTTAGGATTAGATGTGTCGGCTGATAGCAACAAAGATGGTTGCCATTGGAGAGCTGTTTCGGATAATGGTGTGGAAGTTGTCGATTTGGTGGATAGTCCTGATGATGATGAGGTACTAGTTTCTAAAGGTAAAGAGGGAGGAGTAGGAGTTAATGTTGATGTTGATTGTGTGAGTGATGATGAAAGTGATGAGGATGTTGACGATGTTCGTGATAATAAGAGTGATGAGGATGTTTCATCAGCAGAGGAAGATGACAGTAGTGACGAAAGTGTATTCTCTATAGAGGAGGAATATGAATGTGTTTCCTTATCAGTTGAAGATAGTAGTGAGCAGGAAAATGAAGAGGAGAGTGAGGTGACGGAGAAGAATGAGAAAGCGTGCAAGGGAGAAAGTGTTGAGGTTGATTGGAAGGGAAAGATAAATGCTGATGGTGATGTTCTGCATTATTGTTCTGCTCATGATACTGATATTGATGTCAGAAGTGAGCAAGAGTGGAAGGAAGAAAGTCTTGGGATTCATCCGAAGGGAAAGATTAATGCTGATGGGAATGATCTACATTCTTCTTCTGATCATGATATCAGTGACAGAAGGGCAAAATTGGGGGTGGCAGAGAGTGTGTTGGTTACCTCCTGTACTAAAAAGAAGAGCACGAGGGTACCAAAACAGAAAAGATTACCTACTATTGCATTTGAAGCCCCAAAAGTTGAATGTCTCCCTTTGAGATTCAGTTTTGCTAAGCAGCCAACTATTCCTGAGAAGCCAGATTATGAGAGAGAAGTAGATGCCCTTCTTGCTGAATATAAATTTGCTATAGCATATGAGAATGCTTCTGCTGATTCTAAGGCTAAAGACGGCTACTTTACAAGATCAGATAATAACAGAAATGATGTCAATGATGTGACTTATGGTGGTAGTCCAGAAACGGCAATTGATAATGGGAGAACAATTGGTTTGCAGACGGCTTTCAATGAGAATGAAGCTGCCAAAGGACATGATGATGCAAGGTCAAAGAATAGGATACATGATTTCGATGATGAGACGCATGGTGGTGCTTCAGAATCTGGTTTTAATAAAGGCAGTAAATTTGATGTGCACAGGGCTTGCAAGAAGGGTGTAGAGGCCAAAGGAAACAACTTTTCAAGGTCCTTTAATTCACGAAAGGATGACAAAGAAGAGACATATGGTGGTAGTCGTCCAGAAACATATAAGAAGAAAGAAAGGGTGGGGAATCTTACCAACAAAAAGGGCATTACAGGACCAAAAGATTGCAATGCCTTTATGATTCTTGTAGATTCGATTTATGACAAGGGAGAAGTGTCAGGGGAACTACCTCTGTTTGGGGATGAATCCCCCCAAGATGAAGCTCCAAGAGATGAGCCTCTTCCATTGGTTTTCACGCTTGGTCATCCTCCAAGTCCTGCACCAGAGAAGTCAGCTTCTGAGATAGAACTAGAAAACCTTTTTGAAGAATATGACTTTGTCCAAATGTCTGAAGAGATTGGTTCCACTGATTCTAAACTGGTTGAAACTAATGACTCAGTCCCTCCCGGTACGGAAGTTACTCAGTATATGCTTTGTAGTCAAGGGAAACACGATCTTATACTTGATGAAGAAATTGGACTCATATGCCAATTCTGCCCTCATGTGCATCGGGAGATCAAGTATATTGTACCAGACTTTGCTCCAAACCCTTATGGAAAAGCTGGGAAGAGATTTTATGAAGAAGACAACCGGTCTATCCTTGTTGATCTTCAGTGTAATGACCCTGACAATTGTGGCTTTAGTTCGGATGCTCATACTGAAGGCACAGTGTGGGACTTGATCCCTGGTGTGAAAAGTGATATGTACCCTCATCAGCGTGAAGGTTTCGAATTTATTTGGAGTCACTTAGCTGGTGGAATTCAGCTTGGAAAGTTGGCAAAACCTAGTGCTTGTGGCGGTGATGGATGCATTATATCACATGCACCTGGGACTGGGAAGACTCGTTTGACTATTATCTTTATCCAGTCGTACATGAATTTTAACCCATCAAGCAGGCCACTCATTGTTGCTCCACGTACCATGCTTCTTACTTGGGAAGAGGAGTTTAAGAAATGGGGTTTTGACATTCCCTTTCACAATCTTAACAATCCTGACTTCACTGGAAAAGAGGATGAAGCAGCTCGCAATCTTGTGAAGGATGGTAAAAGTTCAGAAATGATAAACTTGACCCGTATCGTGAAGCTAAAGTCCTGGGCAGAGAAAAGAAGCATCTTGGGTATTAGTTATTCACTGTTTGAGCAGATTTGTGGAGCTTCTACCAAGAAAGGAAAACATCCACTTTCTCCAAGACGAAAGCTCGAAGCTGAGCAGATGTGGAAAGTCCTTGTTGAATTTCCTGGTCTTGTAGTATTTGACGAAGGGCACAATCCTCGCAACGACCAGAGTTACTCGTGGAATGCTCTTTTAAAACTGAAAACAAGAAGGCGCATTCTCCTCTCTGGTACTCCTTTTCAGAATAATTTTGAGGAGCTCTACAATACAGTCCGCTTGGTGAGGCCAGAATGGACCACCAATCCTACCTGCCTTGGAGCTTTTGACAAAAAGCAACGGTCTTGGGGCCAAATGCGAGGCAGAAAAGGCAATGCTGGGAAAGGCCAATTTGCTGATGATAATACAAAACGAGCTAAAGAGGTCAGAGCTATGATTTCCCCATTTGTGCATGTTTACAAAGGCACCATACTGCAAGATAAGCTTCCTGGGTTAAGGAACTCAGTTGTTGTTTTACAGCCAACAGCTTTACAGCAGAGATGTTCTGACAGAATTCAGCTGATAAAAAGTCCATTTAAATATGAACGAATAGAGGCTAAAGTAACTATCCACCCTTCTCTCTTGCTTAATGAAAATCGCTCTATGTTTCTCGAGGAAGACAAGTATTCAGGTGACTGGAAAAGGCTAACAGAAATCAAGTTAAATCCTGAAGGTGGAGTGAAGGCAAGATTTGCAGTTGATCTCATTCGGCTTTGTCAAGCTATGAATGAAAGAGTTTTGGTATTCAGTCAGTGGGTTGATCCATTGCTCTTAATAAGGGACCTGCTCAAATCTCAGTTTCAGTGGGTGGAAGGAGAGGAGGTTATGTATATGGATGGAAAATGTGATGCAAAGCAGCGCCAATCCTCAATGAGTTATTTCAATGATCCATCCACCAAAGCAAAGGTTATGTTAGCTACAACAAGAGGTTGCAACGAAGGAATAAGTTTAGTTGGAGCTTCAAGGGTTGTACTGCTTGATGTTGCATGGAACCCTTCTGTTGAGAGGCAAGCTATATCCCGAGCATACCGATTGGGACAGAAAAAAATTGTGTTCATCTACCATCTCCTCATGGCTGGGGCAAGAGAAGAGGACAAATACAACCGACAAGTTGAGAAGTATCGGTTGTCTGAATTGGTATTTTCTTGTTCGGATACAGAAGCTGATGCCAAGAAAATCCCAGCTTCGGTCGCGGAGGACAAGATTTTGGAAGAGATGGTTCAGCACCAGAAACTGAAGCATATATTTCAAAAGATAACATTACTGAATGAAGCTTCATATTTGGACGAAGAATTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

1358

Amino Acids

152.78

Weight (kDa)

5.54

Isoelectric Point (pI)

47.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 777 - 993 1.6e-09 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 780 - 1095 1.4e-23 SNF2-related domain
Helicase_C PF00271 1159 - 1271 5.5e-16 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 422
Acc36I ACCTGC 2 cut(s) 3056, 3567
Acc65I GGTACC 1 cut(s) 1141
AccB1I GGYRCC 2 cut(s) 1141, 3200
AccII CGCG 1 cut(s) 3968
AciI CCGC 4 cut(s) 461, 2424, 3013, 3968
AclWI GGATC 3 cut(s) 2302, 3530, 3656
AcsI RAATTY 9 cut(s) 106, 1289, 1568, 2357, 2385, 2503, 2858, 3288, 4067
AcuI CTGAAG 7 cut(s) 75, 1524, 1998, 2222, 2307, 3465, 4031
AcvI CACGTG 1 cut(s) 10
AcyI GRCGYC 1 cut(s) 80
AdeI CACNNNGTG 1 cut(s) 2298
AfiI CCNNNNNNNGG 5 cut(s) 339, 1823, 2459, 3449, 3961
AgeI ACCGGT 1 cut(s) 2217
AhdI GACNNNNNGTC 1 cut(s) 2218
AhlI ACTAGT 1 cut(s) 601
AjnI CCWGG 7 cut(s) 303, 381, 2311, 2452, 2717, 2863, 3223
AjuI GAANNNNNNNTTGG 2 cut(s) 978, 1010
Alw21I GWGCWC 4 cut(s) 15, 1136, 1581, 3000
Alw26I GTCTC 5 cut(s) 207, 337, 1202, 1517, 1655
Alw44I GTGCAC 1 cut(s) 1577
AlwI GGATC 3 cut(s) 2302, 3530, 3656
AlwNI CAGNNNCTG 4 cut(s) 1547, 1925, 3938, 4009
Ama87I CYCGRG 2 cut(s) 3386, 3795
AoxI GGCC 6 cut(s) 182, 1605, 2522, 3023, 3085, 3121
ApaLI GTGCAC 1 cut(s) 1577
ApeKI GCWGC 4 cut(s) 1225, 1466, 2645, 3631
ApoI RAATTY 9 cut(s) 106, 1289, 1568, 2357, 2385, 2503, 2858, 3288, 4067
ArsI GACNNNNNNTTYG 1 cut(s) 4052
AseI ATTAAT 1 cut(s) 1020
AsiGI ACCGGT 1 cut(s) 2217
Asp718I GGTACC 1 cut(s) 1141
AspLEI GCGC 2 cut(s) 2955, 3636
AspS9I GGNCC 6 cut(s) 297, 1629, 1742, 3033, 3085, 3556
AsuC2I CCSGG 1 cut(s) 2034
AsuHPI GGTGA 7 cut(s) 274, 338, 853, 929, 2438, 3031, 3419
AsuII TTCGAA 1 cut(s) 2355
AvaI CYCGRG 2 cut(s) 3386, 3795
AvaII GGWCC 5 cut(s) 297, 1629, 1742, 3033, 3556
AxyI CCTNAGG 1 cut(s) 140
BaeGI GKGCMC 2 cut(s) 1581, 2892
BaeI ACNNNNGTAYC 4 cut(s) 1125, 1158, 2028, 2061
BanI GGYRCC 2 cut(s) 1141, 3200
BanII GRGCYC 1 cut(s) 3000
BarI GAAGNNNNNNTAC 2 cut(s) 1257, 1289
BauI CACGAG 2 cut(s) 1135, 2917
BbrPI CACGTG 1 cut(s) 10
BbsI GAAGAC 4 cut(s) 80, 2217, 2471, 3399
Bbv12I GWGCWC 4 cut(s) 15, 1136, 1581, 3000
BbvI GCAGC 4 cut(s) 1237, 1453, 2657, 3643
BceAI ACGGC 4 cut(s) 93, 1354, 1425, 1461
BcgI CGANNNNNNTGC 2 cut(s) 2879, 2913
BciT130I CCWGG 7 cut(s) 305, 383, 2313, 2454, 2719, 2865, 3225
BciVI GTATCC 2 cut(s) 1497, 3922
BclI TGATCA 2 cut(s) 367, 1054
BcnI CCSGG 1 cut(s) 2034
BcoDI GTCTC 5 cut(s) 207, 337, 1202, 1517, 1655
BcuI ACTAGT 1 cut(s) 601
BfaI CTAG 4 cut(s) 339, 602, 1937, 2412
BfmI CTRYAG 2 cut(s) 765, 1296
BfoI RGCGCY 1 cut(s) 3637
BfuAI ACCTGC 2 cut(s) 3056, 3567
BfuI GTATCC 2 cut(s) 1497, 3922
BisI GCNGC 4 cut(s) 1226, 1467, 2646, 3632
BlpI GCTNAGC 2 cut(s) 1221, 2832
BlsI GCNGC 4 cut(s) 1227, 1468, 2647, 3633
Bme1390I CCNGG 8 cut(s) 305, 383, 2034, 2313, 2454, 2719, 2865, 3225
Bme18I GGWCC 5 cut(s) 297, 1629, 1742, 3033, 3556
BmeRI GACNNNNNGTC 1 cut(s) 2218
BmeT110I CYCGRG 2 cut(s) 3386, 3795
BmgT120I GGNCC 6 cut(s) 297, 1629, 1742, 3033, 3085, 3556
BmiI GGNNCC 6 cut(s) 1143, 1990, 3086, 3202, 3557, 3767
BmrFI CCNGG 8 cut(s) 305, 383, 2034, 2313, 2454, 2719, 2865, 3225
BmrI ACTGGG 1 cut(s) 2469
BmsI GCATC 9 cut(s) 87, 1258, 1474, 2143, 2266, 2423, 2745, 3613, 3931
BmuI ACTGGG 1 cut(s) 2469
BpiI GAAGAC 4 cut(s) 80, 2217, 2471, 3399
Bpu1102I GCTNAGC 2 cut(s) 1221, 2832
Bpu14I TTCGAA 1 cut(s) 2355
BpuEI CTTGAG 1 cut(s) 259
BpuMI CCSGG 1 cut(s) 2034
BsaAI YACGTR 2 cut(s) 10, 2543
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 6 cut(s) 381, 2311, 2453, 2718, 3052, 3224
BsaWI WCCGGW 1 cut(s) 2217
Bsc4I CCNNNNNNNGG 5 cut(s) 339, 1823, 2459, 3449, 3961
Bse118I RCCGGY 1 cut(s) 2217
Bse1I ACTGG 6 cut(s) 333, 2010, 2464, 2491, 2632, 3416
Bse21I CCTNAGG 1 cut(s) 140
Bse3DI GCAATG 3 cut(s) 1762, 3115, 3539
BseBI CCWGG 7 cut(s) 305, 383, 2313, 2454, 2719, 2865, 3225
BseDI CCNNGG 6 cut(s) 381, 2311, 2453, 2718, 3052, 3224
BseLI CCNNNNNNNGG 5 cut(s) 339, 1823, 2459, 3449, 3961
BseMI GCAATG 3 cut(s) 1762, 3115, 3539
BseMII CTCAG 8 cut(s) 154, 1230, 1917, 2037, 2063, 2823, 3252, 3584
BseNI ACTGG 6 cut(s) 333, 2010, 2464, 2491, 2632, 3416
BseRI GAGGAG 9 cut(s) 496, 639, 785, 845, 2582, 2951, 3008, 3608, 3833
BseSI GKGCMC 2 cut(s) 1581, 2892
BseXI GCAGC 4 cut(s) 1237, 1453, 2657, 3643
BseYI CCCAGC 4 cut(s) 2189, 3113, 3851, 3955
BsgI GTGCAG 1 cut(s) 1890
Bsh1236I CGCG 1 cut(s) 3968
Bsh1285I CGRYCG 1 cut(s) 3966
BshFI GGCC 6 cut(s) 184, 1607, 2524, 3025, 3087, 3123
BshNI GGYRCC 2 cut(s) 1141, 3200
BshTI ACCGGT 1 cut(s) 2217
BsiEI CGRYCG 1 cut(s) 3966
BsiHKAI GWGCWC 4 cut(s) 15, 1136, 1581, 3000
BsiHKCI CYCGRG 2 cut(s) 3386, 3795
BsiSI CCGG 2 cut(s) 2034, 2218
BslFI GGGAC 5 cut(s) 2012, 2315, 2470, 3569, 3825
BslI CCNNNNNNNGG 5 cut(s) 339, 1823, 2459, 3449, 3961
BsmAI GTCTC 5 cut(s) 207, 337, 1202, 1517, 1655
BsmBI CGTCTC 1 cut(s) 1517
BsmFI GGGAC 5 cut(s) 2012, 2315, 2470, 3569, 3825
BsmI GAATGC 3 cut(s) 1315, 2929, 2955
BsnI GGCC 6 cut(s) 184, 1607, 2524, 3025, 3087, 3123
BsoBI CYCGRG 2 cut(s) 3386, 3795
Bsp119I TTCGAA 1 cut(s) 2355
Bsp1286I GDGCHC 5 cut(s) 15, 1136, 1581, 2892, 3000
Bsp1720I GCTNAGC 2 cut(s) 1221, 2832
BspACI CCGC 4 cut(s) 461, 2424, 3013, 3968
BspANI GGCC 6 cut(s) 184, 1607, 2524, 3025, 3087, 3123
BspCNI CTCAG 8 cut(s) 153, 1231, 1918, 2036, 2062, 2824, 3251, 3583
BspFNI CGCG 1 cut(s) 3968
BspHI TCATGA 2 cut(s) 943, 1057
BspLI GGNNCC 6 cut(s) 1143, 1990, 3086, 3202, 3557, 3767
BspMI ACCTGC 2 cut(s) 3056, 3567
BspPI GGATC 3 cut(s) 2302, 3530, 3656
BspQI GCTCTTC 1 cut(s) 1124
BspT104I TTCGAA 1 cut(s) 2355
BspT107I GGYRCC 2 cut(s) 1141, 3200
BsrDI GCAATG 3 cut(s) 1762, 3115, 3539
BsrFI RCCGGY 1 cut(s) 2217
BsrI ACTGG 6 cut(s) 333, 2010, 2464, 2491, 2632, 3416
BssAI RCCGGY 1 cut(s) 2217
BssECI CCNNGG 6 cut(s) 381, 2311, 2453, 2718, 3052, 3224
BssNI GRCGYC 1 cut(s) 80
BssSI CACGAG 2 cut(s) 1135, 2917
BssT1I CCWWGG 1 cut(s) 3052
Bst2BI CACGAG 2 cut(s) 1135, 2917
Bst2UI CCWGG 7 cut(s) 305, 383, 2313, 2454, 2719, 2865, 3225
Bst4CI ACNGT 6 cut(s) 257, 743, 2296, 2760, 3010, 3078
BstACI GRCGYC 1 cut(s) 80
BstAPI GCANNNNNTGC 1 cut(s) 3467
BstBAI YACGTR 2 cut(s) 10, 2543
BstBI TTCGAA 1 cut(s) 2355
BstC8I GCNNGC 5 cut(s) 865, 1588, 2522, 2650, 3786
BstEII GGTNACC 1 cut(s) 1108
BstFNI CGCG 1 cut(s) 3968
BstH2I RGCGCY 1 cut(s) 3637
BstHHI GCGC 2 cut(s) 2955, 3636
BstMAI GTCTC 5 cut(s) 207, 337, 1202, 1517, 1655
BstMCI CGRYCG 1 cut(s) 3966
BstMWI GCNNNNNNNGC 7 cut(s) 1178, 1277, 2121, 3105, 3217, 3467, 3965
BstNI CCWGG 7 cut(s) 305, 383, 2313, 2454, 2719, 2865, 3225
BstNSI RCATGY 2 cut(s) 2450, 3191
BstPI GGTNACC 1 cut(s) 1108
BstSCI CCNGG 8 cut(s) 303, 381, 2032, 2311, 2452, 2717, 2863, 3223
BstSFI CTRYAG 2 cut(s) 765, 1296
BstSLI GKGCMC 2 cut(s) 1581, 2892
BstUI CGCG 1 cut(s) 3968
BstV1I GCAGC 4 cut(s) 1237, 1453, 2657, 3643
BstV2I GAAGAC 4 cut(s) 80, 2217, 2471, 3399
Bsu36I CCTNAGG 1 cut(s) 140
BsuI GTATCC 2 cut(s) 1497, 3922
BsuRI GGCC 6 cut(s) 184, 1607, 2524, 3025, 3087, 3123
BtsIMutI CAGTG 9 cut(s) 262, 1072, 1992, 2246, 2301, 2625, 2756, 3533, 3584
BveI ACCTGC 2 cut(s) 3056, 3567
Cac8I GCNNGC 5 cut(s) 865, 1588, 2522, 2650, 3786
CaiI CAGNNNCTG 4 cut(s) 1547, 1925, 3938, 4009
CciI TCATGA 2 cut(s) 943, 1057
CfoI GCGC 2 cut(s) 2955, 3636
Cfr10I RCCGGY 1 cut(s) 2217
Cfr13I GGNCC 6 cut(s) 297, 1629, 1742, 3033, 3085, 3556
CseI GACGC 2 cut(s) 69, 1534
CspAI ACCGGT 1 cut(s) 2217
DraI TTTAAA 2 cut(s) 2934, 3313
DraIII CACNNNGTG 1 cut(s) 2298
DriI GACNNNNNGTC 1 cut(s) 2218
Eam1105I GACNNNNNGTC 1 cut(s) 2218
Ecl136II GAGCTC 1 cut(s) 2998
Eco130I CCWWGG 1 cut(s) 3052
Eco147I AGGCCT 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 3000
Eco32I GATATC 1 cut(s) 1063
Eco47I GGWCC 5 cut(s) 297, 1629, 1742, 3033, 3556
Eco53kI GAGCTC 1 cut(s) 2998
Eco57I CTGAAG 7 cut(s) 75, 1524, 1998, 2222, 2307, 3465, 4031
Eco72I CACGTG 1 cut(s) 10
Eco81I CCTNAGG 1 cut(s) 140
Eco88I CYCGRG 2 cut(s) 3386, 3795
Eco91I GGTNACC 1 cut(s) 1108
EcoICRI GAGCTC 1 cut(s) 2998
EcoO109I RGGNCCY 2 cut(s) 1629, 3556
EcoO65I GGTNACC 1 cut(s) 1108
EcoRI GAATTC 2 cut(s) 2385, 3288
EcoRII CCWGG 7 cut(s) 303, 381, 2311, 2452, 2717, 2863, 3223
EcoRV GATATC 1 cut(s) 1063
EcoT14I CCWWGG 1 cut(s) 3052
EcoT22I ATGCAT 1 cut(s) 2438
EcoT38I GRGCYC 1 cut(s) 3000
ErhI CCWWGG 1 cut(s) 3052
Esp3I CGTCTC 1 cut(s) 1517
FalI AAGNNNNNCTT 4 cut(s) 978, 1010, 3204, 3236
FaqI GGGAC 5 cut(s) 2012, 2315, 2470, 3569, 3825
FauNDI CATATG 4 cut(s) 321, 1303, 1666, 2111
FbaI TGATCA 2 cut(s) 367, 1054
Fnu4HI GCNGC 4 cut(s) 1226, 1467, 2646, 3632
FriOI GRGCYC 1 cut(s) 3000
Fsp4HI GCNGC 4 cut(s) 1226, 1467, 2646, 3632
FspBI CTAG 4 cut(s) 339, 602, 1937, 2412
GlaI GCGC 2 cut(s) 2954, 3635
GluI GCNGC 4 cut(s) 1226, 1467, 2646, 3632
GsaI CCCAGC 4 cut(s) 2193, 3117, 3855, 3959
HaeII RGCGCY 1 cut(s) 3637
HaeIII GGCC 6 cut(s) 184, 1607, 2524, 3025, 3087, 3123
HapII CCGG 2 cut(s) 2034, 2218
HgaI GACGC 2 cut(s) 69, 1534
HhaI GCGC 2 cut(s) 2955, 3636
Hin1I GRCGYC 1 cut(s) 80
Hin6I GCGC 2 cut(s) 2953, 3634
HinP1I GCGC 2 cut(s) 2953, 3634
HincII GTYRAC 1 cut(s) 685
HindII GTYRAC 1 cut(s) 685
HindIII AAGCTT 2 cut(s) 3218, 4047
HpaII CCGG 2 cut(s) 2034, 2218
HphI GGTGA 7 cut(s) 274, 338, 853, 929, 2438, 3031, 3419
Hpy166II GTNNAC 3 cut(s) 685, 1579, 3193
Hpy8I GTNNAC 3 cut(s) 685, 1579, 3193
Hpy99I CGWCG 1 cut(s) 85
HpyCH4III ACNGT 6 cut(s) 257, 743, 2296, 2760, 3010, 3078
HpyCH4IV ACGT 3 cut(s) 9, 232, 2542
HpyF10VI GCNNNNNNNGC 7 cut(s) 1178, 1277, 2121, 3105, 3217, 3467, 3965
HpySE526I ACGT 3 cut(s) 9, 232, 2542
Hsp92I GRCGYC 1 cut(s) 80
HspAI GCGC 2 cut(s) 2953, 3634
KpnI GGTACC 1 cut(s) 1145
Ksp22I TGATCA 2 cut(s) 367, 1054
LguI GCTCTTC 1 cut(s) 1124
LmnI GCTCC 8 cut(s) 18, 1855, 2173, 2542, 2777, 2995, 3056, 3731
Lsp1109I GCAGC 4 cut(s) 1237, 1453, 2657, 3643
LweI GCATC 9 cut(s) 87, 1258, 1474, 2143, 2266, 2423, 2745, 3613, 3931
MaeI CTAG 4 cut(s) 339, 602, 1937, 2412
MaeII ACGT 3 cut(s) 9, 232, 2542
MfeI CAATTG 3 cut(s) 1413, 1431, 2257
MhlI GDGCHC 5 cut(s) 15, 1136, 1581, 2892, 3000
MlyI GAGTC 8 cut(s) 23, 139, 274, 338, 2015, 2100, 2377, 2461
MmeI TCCRAC 2 cut(s) 324, 3709
Mph1103I ATGCAT 1 cut(s) 2438
MslI CAYNNNNRTG 4 cut(s) 324, 1482, 1533, 2343
MspA1I CMGCKG 1 cut(s) 3295
MspI CCGG 2 cut(s) 2034, 2218
MspR9I CCNGG 8 cut(s) 305, 383, 2034, 2313, 2454, 2719, 2865, 3225
MunI CAATTG 3 cut(s) 1413, 1431, 2257
Mva1269I GAATGC 3 cut(s) 1315, 2929, 2955
MvaI CCWGG 7 cut(s) 305, 383, 2313, 2454, 2719, 2865, 3225
MvnI CGCG 1 cut(s) 3968
MwoI GCNNNNNNNGC 7 cut(s) 1178, 1277, 2121, 3105, 3217, 3467, 3965
NciI CCSGG 1 cut(s) 2034
NdeI CATATG 4 cut(s) 321, 1303, 1666, 2111
NlaIV GGNNCC 6 cut(s) 1143, 1990, 3086, 3202, 3557, 3767
NmuCI GTSAC 6 cut(s) 746, 841, 1067, 1384, 2369, 3407
NsiI ATGCAT 1 cut(s) 2438
NspI RCATGY 2 cut(s) 2450, 3191
NspV TTCGAA 1 cut(s) 2355
PaeR7I CTCGAG 1 cut(s) 3386
PagI TCATGA 2 cut(s) 943, 1057
PceI AGGCCT 1 cut(s) 184
PciSI GCTCTTC 1 cut(s) 1124
PctI GAATGC 3 cut(s) 1315, 2929, 2955
PflFI GACNNNGTC 3 cut(s) 79, 1964, 2024
PinAI ACCGGT 1 cut(s) 2217
PkrI GCNGC 4 cut(s) 1227, 1468, 2647, 3633
PleI GAGTC 8 cut(s) 23, 139, 273, 337, 2015, 2100, 2376, 2461
PmaCI CACGTG 1 cut(s) 10
PmlI CACGTG 1 cut(s) 10
PpsI GAGTC 8 cut(s) 23, 139, 273, 337, 2015, 2100, 2376, 2461
Ppu21I YACGTR 2 cut(s) 10, 2543
PpuMI RGGWCCY 2 cut(s) 1629, 3556
PshBI ATTAAT 1 cut(s) 1020
PsiI TTATAA 1 cut(s) 422
Psp124BI GAGCTC 1 cut(s) 3000
Psp5II RGGWCCY 2 cut(s) 1629, 3556
Psp6I CCWGG 7 cut(s) 303, 381, 2311, 2452, 2717, 2863, 3223
PspCI CACGTG 1 cut(s) 10
PspEI GGTNACC 1 cut(s) 1108
PspFI CCCAGC 4 cut(s) 2189, 3113, 3851, 3955
PspGI CCWGG 7 cut(s) 303, 381, 2311, 2452, 2717, 2863, 3223
PspN4I GGNNCC 6 cut(s) 1143, 1990, 3086, 3202, 3557, 3767
PspPI GGNCC 6 cut(s) 297, 1629, 1742, 3033, 3085, 3556
PspPPI RGGWCCY 2 cut(s) 1629, 3556
PstNI CAGNNNCTG 4 cut(s) 1547, 1925, 3938, 4009
PsyI GACNNNGTC 3 cut(s) 79, 1964, 2024
PvuII CAGCTG 1 cut(s) 3295
RseI CAYNNNNRTG 4 cut(s) 324, 1482, 1533, 2343
SacI GAGCTC 1 cut(s) 3000
SapI GCTCTTC 1 cut(s) 1124
SatI GCNGC 4 cut(s) 1226, 1467, 2646, 3632
Sau96I GGNCC 6 cut(s) 297, 1629, 1742, 3033, 3085, 3556
SchI GAGTC 8 cut(s) 23, 139, 274, 338, 2015, 2100, 2377, 2461
ScrFI CCNGG 8 cut(s) 305, 383, 2034, 2313, 2454, 2719, 2865, 3225
SduI GDGCHC 5 cut(s) 15, 1136, 1581, 2892, 3000
SfaNI GCATC 9 cut(s) 87, 1258, 1474, 2143, 2266, 2423, 2745, 3613, 3931
SfcI CTRYAG 2 cut(s) 765, 1296
Sfr274I CTCGAG 1 cut(s) 3386
SfuI TTCGAA 1 cut(s) 2355
SinI GGWCC 5 cut(s) 297, 1629, 1742, 3033, 3556
SlaI CTCGAG 1 cut(s) 3386
SmiI ATTTAAAT 1 cut(s) 3313
SmiMI CAYNNNNRTG 4 cut(s) 324, 1482, 1533, 2343
SmlI CTYRAG 2 cut(s) 274, 3386
SmoI CTYRAG 2 cut(s) 274, 3386
SpeI ACTAGT 1 cut(s) 601
SseBI AGGCCT 1 cut(s) 184
SsiI CCGC 4 cut(s) 461, 2424, 3013, 3968
SspMI CTAG 4 cut(s) 339, 602, 1937, 2412
SstI GAGCTC 1 cut(s) 3000
StuI AGGCCT 1 cut(s) 184
StyD4I CCNGG 8 cut(s) 303, 381, 2032, 2311, 2452, 2717, 2863, 3223
StyI CCWWGG 1 cut(s) 3052
SwaI ATTTAAAT 1 cut(s) 3313
TaaI ACNGT 6 cut(s) 257, 743, 2296, 2760, 3010, 3078
TaiI ACGT 3 cut(s) 12, 235, 2545
TaqI TCGA 7 cut(s) 206, 567, 1515, 1781, 2355, 2826, 3387
TaqII GACCGA 1 cut(s) 3952
TatI WGTACW 2 cut(s) 1118, 3745
TscAI CASTG 9 cut(s) 262, 1072, 1999, 2246, 2301, 2632, 2763, 3533, 3584
TseFI GTSAC 6 cut(s) 746, 841, 1067, 1384, 2369, 3407
TseI GCWGC 4 cut(s) 1225, 1466, 2645, 3631
Tsp45I GTSAC 6 cut(s) 746, 841, 1067, 1384, 2369, 3407
TspGWI ACGGA 3 cut(s) 110, 860, 2054
TspRI CASTG 9 cut(s) 262, 1072, 1999, 2246, 2301, 2632, 2763, 3533, 3584
Tth111I GACNNNGTC 3 cut(s) 79, 1964, 2024
VneI GTGCAC 1 cut(s) 1577
VpaK11BI GGWCC 5 cut(s) 297, 1629, 1742, 3033, 3556
VspI ATTAAT 1 cut(s) 1020
XapI RAATTY 9 cut(s) 106, 1289, 1568, 2357, 2385, 2503, 2858, 3288, 4067
XceI RCATGY 2 cut(s) 2450, 3191
XhoI CTCGAG 1 cut(s) 3386
XspI CTAG 4 cut(s) 339, 602, 1937, 2412
Zsp2I ATGCAT 1 cut(s) 2438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.