AT1G06450

CAF1 family ribonuclease

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
1965840 .. 1967219
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G06450.1

Sequence Viewer

Length: 1083 bp
ATGAACGAGATTCATCAACCGCTGGCGAGGAGAGTATGGAGAAGCAACGTCGATGAAGAGATGGCTCGTATGGCCGAATGTCTCAAGCGATTCCCACTCATCGCTTTCGATACAGAGTACCCTGGCATTATTTTCCGCACTTATTTCGATTCCTCTAGCGACGAATGTTACAGAGCCATGAAAGGTAATGTCGAGAACACCAAGCTGATCCAGTGTGGTTTCACTCTTTTCAACGCCAAGGGAGAGATCGGTGGTGTTTGGGAGATTAACTTCTCCAATTTCGGCGACCCATCAGACACACGCAACGAGCTTTCCATCGAATTCTTGAGGAGGCATGGTTTGGATTTGCAGAAGATTAGAGACGAAGGAGTTGATATGTTCGGCTACGGGTTTTTCCCTAAGCTTATGACTGTGTTTCGTTCTCAGAAACACGTTGAGTTCGTCACTTTCCAAGGAGCTTACGATTTCGCTTACTTCTTGAGTATCCTCAATCATGGCAAGCTACCAGAGACTCACGGCGAGTTTGCAACAGAGGTTGTCAAAGTGTTCGGTCAAGTTTACGACACCAAGGTCATGGCTGGATTCTGTGAAGGACTAGGTGAACACCTCGGGTTAAGCAAACTAGCCCAGCTACTTCAGATCACTCGTGTGGGAAGAGCACATCACGCTGGTTCAGACAGCTTAATGACTGCACTTGTCTTCATCAAGCTTAAACATGTCTATGAAGATTCCAGATTTGCTAGAGGATTGATCTATGGAATTGGGAAAAGCAACCTCGTTGCCGCCCCTGCCCCTGCGCCTGTGCCAGAGCCGACTCTTCCTTTGATGTGCCAGCAGAATGTAGCTTCATATCCTGTGTTCCACAATGGATATGTCCAGAACTATGAGCAGCCTCAGCTTGTCTCCTACGATCCTTCAGGTGCCCCATGGGCGTTCTGTAATGCTACCGGTACGTATGTGCAGCTTACTCATCTACCTGCAAGCACTTTTGCATACCCGTCTCAGACGCCATCTGCTACTGTTGATTATCTTGGACCAGTTCCTAATTATTACAACAATAATGCTTGCTACGTAGTTGAGTAG

Protein Analysis

360

Amino Acids

40.48

Weight (kDa)

5.89

Isoelectric Point (pI)

40.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAF1 PF04857 12 - 124 2.5e-11 CAF1 family ribonuclease
CAF1 PF04857 147 - 234 1e-08 CAF1 family ribonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 569
Acc36I ACCTGC 1 cut(s) 985
AccB1I GGYRCC 1 cut(s) 920
AciI CCGC 3 cut(s) 20, 136, 783
AclWI GGATC 2 cut(s) 202, 905
AcoI YGGCCR 1 cut(s) 72
AcsI RAATTY 1 cut(s) 320
AcuI CTGAAG 2 cut(s) 620, 900
AcyI GRCGYC 1 cut(s) 1007
AfaI GTAC 2 cut(s) 119, 952
AflIII ACRYGT 2 cut(s) 430, 715
AgeI ACCGGT 1 cut(s) 947
AgsI TTSAA 1 cut(s) 232
AjnI CCWGG 1 cut(s) 121
AleI CACNNNNGTG 1 cut(s) 647
Alw21I GWGCWC 1 cut(s) 661
Alw26I GTCTC 5 cut(s) 86, 354, 503, 907, 1005
AlwI GGATC 2 cut(s) 202, 905
Ama87I CYCGRG 1 cut(s) 608
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 2 cut(s) 889, 961
ApoI RAATTY 1 cut(s) 320
ArsI GACNNNNNNTTYG 2 cut(s) 805, 837
AsiGI ACCGGT 1 cut(s) 947
AspLEI GCGC 1 cut(s) 799
AspS9I GGNCC 1 cut(s) 1034
AsuHPI GGTGA 1 cut(s) 611
AvaI CYCGRG 1 cut(s) 608
AvaII GGWCC 1 cut(s) 1034
BaeGI GKGCMC 1 cut(s) 925
BaeI ACNNNNGTAYC 2 cut(s) 942, 975
BanI GGYRCC 1 cut(s) 920
BauI CACGAG 1 cut(s) 645
BbsI GAAGAC 1 cut(s) 691
Bbv12I GWGCWC 1 cut(s) 661
BbvCI CCTCAGC 1 cut(s) 894
BbvI GCAGC 2 cut(s) 901, 973
BccI CCATC 4 cut(s) 55, 298, 323, 1018
BceAI ACGGC 1 cut(s) 532
BcgI CGANNNNNNTGC 2 cut(s) 127, 161
BciT130I CCWGG 1 cut(s) 123
BciVI GTATCC 1 cut(s) 494
BcoDI GTCTC 5 cut(s) 86, 354, 503, 907, 1005
BfaI CTAG 4 cut(s) 156, 596, 623, 741
BfuAI ACCTGC 1 cut(s) 985
BfuI GTATCC 1 cut(s) 494
BglI GCCNNNNNGGC 1 cut(s) 929
BisI GCNGC 3 cut(s) 783, 890, 962
BlsI GCNGC 3 cut(s) 784, 891, 963
Bme1390I CCNGG 1 cut(s) 123
Bme18I GGWCC 1 cut(s) 1034
BmeT110I CYCGRG 1 cut(s) 608
BmgT120I GGNCC 1 cut(s) 1034
BmiI GGNNCC 1 cut(s) 922
BmrFI CCNGG 1 cut(s) 123
BpiI GAAGAC 1 cut(s) 691
Bpu10I CCTNAGC 2 cut(s) 399, 894
BpuEI CTTGAG 3 cut(s) 68, 346, 499
BsaAI YACGTR 2 cut(s) 954, 1072
BsaHI GRCGYC 1 cut(s) 1007
BsaJI CCNNGG 6 cut(s) 121, 237, 451, 567, 607, 926
BsaWI WCCGGW 1 cut(s) 947
BsaXI ACNNNNNCTCC 2 cut(s) 322, 352
Bse118I RCCGGY 1 cut(s) 947
Bse1I ACTGG 2 cut(s) 211, 1037
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 6 cut(s) 121, 237, 451, 567, 607, 926
BseMII CTCAG 3 cut(s) 437, 908, 1016
BseNI ACTGG 2 cut(s) 211, 1037
BseRI GAGGAG 2 cut(s) 43, 343
BseSI GKGCMC 1 cut(s) 925
BseXI GCAGC 2 cut(s) 901, 973
BseYI CCCAGC 1 cut(s) 627
BsgI GTGCAG 2 cut(s) 675, 980
BshFI GGCC 1 cut(s) 74
BshNI GGYRCC 1 cut(s) 920
BshTI ACCGGT 1 cut(s) 947
BsiHKAI GWGCWC 1 cut(s) 661
BsiHKCI CYCGRG 1 cut(s) 608
BsiSI CCGG 1 cut(s) 948
BsmAI GTCTC 5 cut(s) 86, 354, 503, 907, 1005
BsmBI CGTCTC 2 cut(s) 354, 1005
BsnI GGCC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 608
Bsp1286I GDGCHC 2 cut(s) 661, 925
Bsp143I GATC 5 cut(s) 207, 246, 639, 750, 910
Bsp19I CCATGG 1 cut(s) 926
BspACI CCGC 3 cut(s) 20, 136, 783
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 3 cut(s) 436, 907, 1015
BspLI GGNNCC 1 cut(s) 922
BspMI ACCTGC 1 cut(s) 985
BspPI GGATC 2 cut(s) 202, 905
BspQI GCTCTTC 1 cut(s) 649
BspT107I GGYRCC 1 cut(s) 920
BsrFI RCCGGY 1 cut(s) 947
BsrI ACTGG 2 cut(s) 211, 1037
BssAI RCCGGY 1 cut(s) 947
BssECI CCNNGG 6 cut(s) 121, 237, 451, 567, 607, 926
BssMI GATC 5 cut(s) 207, 246, 639, 750, 910
BssNI GRCGYC 1 cut(s) 1007
BssSI CACGAG 1 cut(s) 645
BssT1I CCWWGG 4 cut(s) 237, 451, 567, 926
Bst2BI CACGAG 1 cut(s) 645
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 2 cut(s) 412, 1021
Bst6I CTCTTC 3 cut(s) 51, 649, 822
BstACI GRCGYC 1 cut(s) 1007
BstBAI YACGTR 2 cut(s) 954, 1072
BstC8I GCNNGC 5 cut(s) 24, 500, 833, 982, 1066
BstDEI CTNAG 4 cut(s) 399, 423, 894, 1002
BstDSI CCRYGG 1 cut(s) 926
BstHHI GCGC 1 cut(s) 799
BstKTI GATC 5 cut(s) 210, 249, 642, 753, 913
BstMAI GTCTC 5 cut(s) 86, 354, 503, 907, 1005
BstMBI GATC 5 cut(s) 207, 246, 639, 750, 910
BstMWI GCNNNNNNNGC 5 cut(s) 71, 665, 788, 895, 929
BstNI CCWGG 1 cut(s) 123
BstNSI RCATGY 1 cut(s) 719
BstSCI CCNGG 1 cut(s) 121
BstSLI GKGCMC 1 cut(s) 925
BstSNI TACGTA 2 cut(s) 954, 1072
BstV1I GCAGC 2 cut(s) 901, 973
BstV2I GAAGAC 1 cut(s) 691
BstXI CCANNNNNNTGG 1 cut(s) 574
BsuI GTATCC 1 cut(s) 494
BsuRI GGCC 1 cut(s) 74
BtgI CCRYGG 1 cut(s) 926
BtgZI GCGATG 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 218
BveI ACCTGC 1 cut(s) 985
Cac8I GCNNGC 5 cut(s) 24, 500, 833, 982, 1066
CfoI GCGC 1 cut(s) 799
Cfr10I RCCGGY 1 cut(s) 947
Cfr13I GGNCC 1 cut(s) 1034
CseI GACGC 1 cut(s) 1015
Csp6I GTAC 2 cut(s) 118, 951
CspAI ACCGGT 1 cut(s) 947
CviAII CATG 6 cut(s) 178, 335, 494, 574, 716, 927
CviQI GTAC 2 cut(s) 118, 951
DdeI CTNAG 4 cut(s) 399, 423, 894, 1002
DpnI GATC 5 cut(s) 209, 248, 641, 752, 912
DpnII GATC 5 cut(s) 207, 246, 639, 750, 910
DrdI GACNNNNNNGTC 1 cut(s) 569
DseDI GACNNNNNNGTC 1 cut(s) 569
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 3 cut(s) 51, 649, 822
EarI CTCTTC 3 cut(s) 51, 649, 822
Eco105I TACGTA 2 cut(s) 954, 1072
Eco130I CCWWGG 4 cut(s) 237, 451, 567, 926
Eco47I GGWCC 1 cut(s) 1034
Eco57I CTGAAG 2 cut(s) 620, 900
Eco88I CYCGRG 1 cut(s) 608
EcoRI GAATTC 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 4 cut(s) 237, 451, 567, 926
ErhI CCWWGG 4 cut(s) 237, 451, 567, 926
Esp3I CGTCTC 2 cut(s) 354, 1005
FaeI CATG 6 cut(s) 181, 338, 497, 577, 719, 930
FatI CATG 6 cut(s) 177, 334, 493, 573, 715, 926
Fnu4HI GCNGC 3 cut(s) 783, 890, 962
Fsp4HI GCNGC 3 cut(s) 783, 890, 962
FspBI CTAG 4 cut(s) 156, 596, 623, 741
GlaI GCGC 1 cut(s) 798
GluI GCNGC 3 cut(s) 783, 890, 962
GsaI CCCAGC 1 cut(s) 631
HaeIII GGCC 1 cut(s) 74
HapII CCGG 1 cut(s) 948
HgaI GACGC 1 cut(s) 1015
HhaI GCGC 1 cut(s) 799
Hin1I GRCGYC 1 cut(s) 1007
Hin1II CATG 6 cut(s) 181, 338, 497, 577, 719, 930
Hin6I GCGC 1 cut(s) 797
HinP1I GCGC 1 cut(s) 797
HindIII AAGCTT 2 cut(s) 401, 707
HinfI GANTC 7 cut(s) 10, 90, 149, 511, 582, 728, 814
HpaII CCGG 1 cut(s) 948
HphI GGTGA 1 cut(s) 611
Hpy166II GTNNAC 2 cut(s) 559, 602
Hpy188I TCNGA 5 cut(s) 295, 426, 639, 676, 1005
Hpy188III TCNNGA 5 cut(s) 193, 325, 478, 732, 877
Hpy8I GTNNAC 2 cut(s) 559, 602
Hpy99I CGWCG 2 cut(s) 53, 164
HpyAV CCTTC 3 cut(s) 359, 584, 924
HpyCH4III ACNGT 2 cut(s) 412, 1021
HpyCH4IV ACGT 4 cut(s) 48, 432, 953, 1071
HpyCH4V TGCA 6 cut(s) 349, 527, 692, 961, 980, 992
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 665, 788, 895, 929
HpyF3I CTNAG 4 cut(s) 399, 423, 894, 1002
HpySE526I ACGT 4 cut(s) 48, 432, 953, 1071
Hsp92I GRCGYC 1 cut(s) 1007
Hsp92II CATG 6 cut(s) 181, 338, 497, 577, 719, 930
HspAI GCGC 1 cut(s) 797
Kzo9I GATC 5 cut(s) 207, 246, 639, 750, 910
LguI GCTCTTC 1 cut(s) 649
LmnI GCTCC 1 cut(s) 455
Lsp1109I GCAGC 2 cut(s) 901, 973
MaeI CTAG 4 cut(s) 156, 596, 623, 741
MaeII ACGT 4 cut(s) 48, 432, 953, 1071
MaeIII GTNAC 2 cut(s) 167, 442
MalI GATC 5 cut(s) 209, 248, 641, 752, 912
MboI GATC 5 cut(s) 207, 246, 639, 750, 910
MboII GAAGA 6 cut(s) 68, 364, 666, 691, 737, 809
MhlI GDGCHC 2 cut(s) 661, 925
MluCI AATT 4 cut(s) 277, 320, 759, 1045
MlyI GAGTC 2 cut(s) 505, 808
MseI TTAA 4 cut(s) 267, 614, 683, 711
MslI CAYNNNNRTG 2 cut(s) 647, 720
MspA1I CMGCKG 1 cut(s) 22
MspI CCGG 1 cut(s) 948
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
MwoI GCNNNNNNNGC 5 cut(s) 71, 665, 788, 895, 929
NcoI CCATGG 1 cut(s) 926
NdeII GATC 5 cut(s) 207, 246, 639, 750, 910
NlaIII CATG 6 cut(s) 181, 338, 497, 577, 719, 930
NlaIV GGNNCC 1 cut(s) 922
NmuCI GTSAC 1 cut(s) 442
NspI RCATGY 1 cut(s) 719
OliI CACNNNNGTG 1 cut(s) 647
PciI ACATGT 1 cut(s) 715
PciSI GCTCTTC 1 cut(s) 649
PcsI WCGNNNNNNNCGW 1 cut(s) 438
PfeI GAWTC 5 cut(s) 10, 90, 149, 582, 728
PinAI ACCGGT 1 cut(s) 947
PkrI GCNGC 3 cut(s) 784, 891, 963
PleI GAGTC 2 cut(s) 505, 808
PpsI GAGTC 2 cut(s) 505, 808
Ppu21I YACGTR 2 cut(s) 954, 1072
PscI ACATGT 1 cut(s) 715
Psp6I CCWGG 1 cut(s) 121
PspFI CCCAGC 1 cut(s) 627
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 922
PspPI GGNCC 1 cut(s) 1034
RsaI GTAC 2 cut(s) 119, 952
RsaNI GTAC 2 cut(s) 118, 951
RseI CAYNNNNRTG 2 cut(s) 647, 720
SapI GCTCTTC 1 cut(s) 649
SaqAI TTAA 4 cut(s) 267, 614, 683, 711
SatI GCNGC 3 cut(s) 783, 890, 962
Sau3AI GATC 5 cut(s) 207, 246, 639, 750, 910
Sau96I GGNCC 1 cut(s) 1034
SchI GAGTC 2 cut(s) 505, 808
ScrFI CCNGG 1 cut(s) 123
SduI GDGCHC 2 cut(s) 661, 925
SinI GGWCC 1 cut(s) 1034
SmiMI CAYNNNNRTG 2 cut(s) 647, 720
SmlI CTYRAG 3 cut(s) 83, 325, 478
SmoI CTYRAG 3 cut(s) 83, 325, 478
SnaBI TACGTA 2 cut(s) 954, 1072
Sse9I AATT 4 cut(s) 277, 320, 759, 1045
SsiI CCGC 3 cut(s) 20, 136, 783
SspMI CTAG 4 cut(s) 156, 596, 623, 741
StyD4I CCNGG 1 cut(s) 121
StyI CCWWGG 4 cut(s) 237, 451, 567, 926
TaaI ACNGT 2 cut(s) 412, 1021
TaiI ACGT 4 cut(s) 51, 435, 956, 1074
TaqI TCGA 5 cut(s) 51, 108, 147, 192, 318
TaqII GACCGA 1 cut(s) 539
TasI AATT 4 cut(s) 277, 320, 759, 1045
TauI GCSGC 1 cut(s) 785
TfiI GAWTC 5 cut(s) 10, 90, 149, 582, 728
Tru1I TTAA 4 cut(s) 267, 614, 683, 711
Tru9I TTAA 4 cut(s) 267, 614, 683, 711
TscAI CASTG 1 cut(s) 218
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 2 cut(s) 889, 961
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 6 cut(s) 17, 69, 194, 691, 738, 837
TspRI CASTG 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 1034
XapI RAATTY 1 cut(s) 320
XceI RCATGY 1 cut(s) 719
XspI CTAG 4 cut(s) 156, 596, 623, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.