Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000757

Physical Location & Seq

Genomic Coordinates Forward (+)

17231922 .. 17233489

Gene Structure 1568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G188200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGAAATCCTATAAATACATTCTCTTCCCTTCAATTTCATTTTCAATTTCAAACCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTTCTCTGCTTTCTGCTCTCTACTCTGTGCTCGCTTTCTGCTCTCTATGCTCTCTGCTATTTGTTCTCACACTGCTAGTCATGAAGATCAGAGGAGTTTGGGCCCACAACTTCCATCAAGAATTGTCTCAATTCGATCACTGCCTGCACCGCTTCCCCGTCATCTCTTTTGATACCGAATTTCCAGGCTTTCTCCGAGACACTCCTCGAGACGCACTTGAAGATCATCGTTACGAAGATGTAAAATTCAATGTTGAATCCCTCAAATTGCTCCAGTTGGGATTCACTCTGTCCGACGCCCATGGCAACATTGGGGGAACTTGGGAATTCCACTTGTCTGGGTTCAATGAGAAATCTGACCCTCATGTTGTCGCTTCCATTTCTCTACTTAAAAGGAACGGTCTTGATTTTGCGAGACTTGGGCAATTTGGGATTTCTGTTGCGGAGTTTGTGTTCGGGTTTCTGCGTGTCCTTAGAATCCACAGAGGGTTGCATGATTTGACATGGGTTTGCTTTCATGGCCTTTATGACCTGGCCTATTTGCTCAAGTTCTTGACCCAAAAGCCTCTGCCCAATTCAGTGGTGATGTTTGCTAAGGCTCTTGGTGTAGTTTTTGGCATCATTTATGACGTCAAGTTTATGGCTCGCTACTGCAAAGGATTCTTTGGTGGTGAAATTGGATTGGCAAGGGTGGCCAAGCTTCTTGATGTGGAGCGATCTGGTGAAGCTCATCAAGCTGGTTCGGACAGTTTGTTGACTGCTGTTGTGTTCTCCAAGATGAACGCAACGTTTAGGTCTGTGGCTGGGATGTCTCAAGGCTGCTTGTATGGAATTAGCCCAACAATCGTGCGATATTGGCAGCCCGCTCCTGTGGTTGTTGCTCCTGTGATCCTCCGTCGCCCTTGCTTTCCTGTTGCAGCACCTGGTGTCTACGGTGCTCGTCTCATTCATAGTCCTATTCTTCCCACTTATGTACACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000288 GO:0000291 GO:0000932 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004535 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017148 GO:0019222 GO:0019439 GO:0030014 GO:0030015 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032991 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CAF1

Protein Analysis

368

Amino Acids

40.8

Weight (kDa)

8.96

Isoelectric Point (pI)

34.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06450 AT1G27820 AT1G27890 AT1G61470 AT3G44240
fragaria_vesca	FvH4_6g28110 FvH4_6g28140 FvH4_6g29280 FvH4_6g29280
malus_domestica	MD03G1041900.v1.1 MD09G1229300.v1.1 MD11G1042700.v1.1 MD12G1082100.v1.1 MD14G1080800.v1.1
prunus_persica	Prupe.1G188200_v2.0.a1 Prupe.1G190800_v2.0.a1 Prupe.1G190900_v2.0.a1 Prupe.3G105100_v2.0.a1 Prupe.7G010200_v2.0.a1
pyrus_communis	pycom09g14790 pycom14g07010
rosa_chinensis	RchiOBHm_Chr2g0132091 RchiOBHm_Chr2g0132101 RchiOBHm_Chr2g0134441 RchiOBHm_Chr2g0134461 RchiOBHm_Chr2g0136851 RchiOBHm_Chr2g0167821 RchiOBHm_Chr2g0167861 RchiOBHm_Chr2g0167901 RchiOBHm_Chr2g0167921 RchiOBHm_Chr6g0266841
rosa_laevigata	RLG00000019225 RLG00000019226 RLG00000019393
rosa_multiflora	Rmu_sc0001299.1_g000004 Rmu_sc0005571.1_g000018
rosa_roxburghii	Rroxscaffold_2G00110210 Rroxscaffold_2G00110240 Rroxscaffold_2G00112400 Rroxscaffold_3G00239330 Rroxscaffold_4G00313080
rosa_rugosa	Rorug02G0302000 Rorug02G0302200 Rorug02G0317200 Rorug02G0317200 Rorug03G0220600
rosa_samantha	Rh2AG355100 Rh2AG355200 Rh2AG369800 Rh2AG369900 Rh2AG384800 Rh2CG338700 Rh2CG338800 Rh2CG353700 Rh2CG371400 Rh2DG370100 Rh2DG377900 Rh2DG378000 Rh2DG392800 Rh2DG392900 Rh2DG408200 Rh6BG148800 Rh6BG149300 Rh6CG159200 Rh6DG133000 Rh6DG133400
rosa_wichuraiana	Rw1G013790 Rw2G028830 Rw2G028840 Rw2G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	753
AccBSI	CCGCTC	1 cut(s)	986
AccI	GTMKAC	1 cut(s)	1050
AciI	CCGC	3 cut(s)	271, 563, 984
AclI	AACGTT	1 cut(s)	908
AclWI	GGATC	1 cut(s)	1003
AcoI	YGGCCR	1 cut(s)	813
AcsI	RAATTY	3 cut(s)	299, 365, 446
AcyI	GRCGYC	2 cut(s)	417, 750
AdeI	CACNNNGTG	1 cut(s)	1046
AfaI	GTAC	1 cut(s)	1095
AflIII	ACRYGT	1 cut(s)	1098
AgsI	TTSAA	7 cut(s)	33, 45, 51, 341, 370, 377, 466
AjnI	CCWGG	3 cut(s)	304, 651, 1042
AloI	GAACNNNNNNTCC	2 cut(s)	557, 589
AluBI	AGCT	3 cut(s)	820, 848, 857
AluI	AGCT	3 cut(s)	820, 848, 857
Alw21I	GWGCWC	2 cut(s)	153, 1060
Alw26I	GTCTC	6 cut(s)	252, 312, 324, 529, 936, 1067
AlwI	GGATC	1 cut(s)	1003
AlwNI	CAGNNNCTG	1 cut(s)	1043
Ama87I	CYCGRG	1 cut(s)	327
AoxI	GGCC	4 cut(s)	222, 640, 654, 813
ApaI	GGGCCC	1 cut(s)	226
ApeKI	GCWGC	3 cut(s)	939, 979, 1037
ApoI	RAATTY	3 cut(s)	299, 365, 446
AspS9I	GGNCC	2 cut(s)	222, 223
AsuHPI	GGTGA	3 cut(s)	715, 803, 854
AvaI	CYCGRG	1 cut(s)	327
BaeGI	GKGCMC	1 cut(s)	226
BalI	TGGCCA	1 cut(s)	815
BanII	GRGCYC	1 cut(s)	226
Bbv12I	GWGCWC	2 cut(s)	153, 1060
BbvI	GCAGC	3 cut(s)	926, 991, 1049
BccI	CCATC	2 cut(s)	64, 243
BciT130I	CCWGG	3 cut(s)	306, 653, 1044
BcoDI	GTCTC	6 cut(s)	252, 312, 324, 529, 936, 1067
BfaI	CTAG	1 cut(s)	197
BisI	GCNGC	3 cut(s)	940, 980, 1038
BlsI	GCNGC	3 cut(s)	941, 981, 1039
Bme1390I	CCNGG	3 cut(s)	306, 653, 1044
BmeT110I	CYCGRG	1 cut(s)	327
BmgT120I	GGNCC	2 cut(s)	222, 223
BmiI	GGNNCC	1 cut(s)	224
BmrFI	CCNGG	3 cut(s)	306, 653, 1044
BmsI	GCATC	1 cut(s)	747
BpmI	CTGGAG	1 cut(s)	377
Bpu10I	CCTNAGC	1 cut(s)	714
BpuEI	CTTGAG	2 cut(s)	650, 918
BsaHI	GRCGYC	2 cut(s)	417, 750
BsaJI	CCNNGG	1 cut(s)	421
BsaXI	ACNNNNNCTCC	2 cut(s)	557, 587
Bse1I	ACTGG	1 cut(s)	394
BseBI	CCWGG	3 cut(s)	306, 653, 1044
BseDI	CCNNGG	1 cut(s)	421
BseGI	GGATG	1 cut(s)	933
BseNI	ACTGG	1 cut(s)	394
BseRI	GAGGAG	2 cut(s)	228, 315
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	3 cut(s)	926, 991, 1049
BseYI	CCCAGC	1 cut(s)	923
BsgI	GTGCAG	1 cut(s)	251
BshFI	GGCC	4 cut(s)	224, 642, 656, 815
BsiHKAI	GWGCWC	2 cut(s)	153, 1060
BsiHKCI	CYCGRG	1 cut(s)	327
BsmAI	GTCTC	6 cut(s)	252, 312, 324, 529, 936, 1067
BsmBI	CGTCTC	2 cut(s)	324, 1067
BsnI	GGCC	4 cut(s)	224, 642, 656, 815
BsoBI	CYCGRG	1 cut(s)	327
Bsp120I	GGGCCC	1 cut(s)	222
Bsp1286I	GDGCHC	3 cut(s)	153, 226, 1060
Bsp1407I	TGTACA	1 cut(s)	1093
Bsp143I	GATC	5 cut(s)	207, 256, 343, 836, 1008
Bsp19I	CCATGG	1 cut(s)	421
BspACI	CCGC	3 cut(s)	271, 563, 984
BspANI	GGCC	4 cut(s)	224, 642, 656, 815
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	224
BspPI	GGATC	1 cut(s)	1003
BsrBI	CCGCTC	1 cut(s)	986
BsrGI	TGTACA	1 cut(s)	1093
BsrI	ACTGG	1 cut(s)	394
BssECI	CCNNGG	1 cut(s)	421
BssMI	GATC	5 cut(s)	207, 256, 343, 836, 1008
BssNI	GRCGYC	2 cut(s)	417, 750
BssT1I	CCWWGG	1 cut(s)	421
Bst2UI	CCWGG	3 cut(s)	306, 653, 1044
Bst4CI	ACNGT	3 cut(s)	521, 869, 1055
Bst6I	CTCTTC	1 cut(s)	29
BstACI	GRCGYC	2 cut(s)	417, 750
BstAUI	TGTACA	1 cut(s)	1093
BstC8I	GCNNGC	4 cut(s)	153, 266, 766, 984
BstDEI	CTNAG	2 cut(s)	593, 714
BstDSI	CCRYGG	1 cut(s)	421
BstF5I	GGATG	1 cut(s)	933
BstKTI	GATC	5 cut(s)	210, 259, 346, 839, 1011
BstMAI	GTCTC	6 cut(s)	252, 312, 324, 529, 936, 1067
BstMBI	GATC	5 cut(s)	207, 256, 343, 836, 1008
BstMWI	GCNNNNNNNGC	6 cut(s)	168, 270, 639, 812, 854, 976
BstNI	CCWGG	3 cut(s)	306, 653, 1044
BstNSI	RCATGY	1 cut(s)	1102
BstSCI	CCNGG	3 cut(s)	304, 651, 1042
BstSLI	GKGCMC	1 cut(s)	226
BstV1I	GCAGC	3 cut(s)	926, 991, 1049
BstXI	CCANNNNNNTGG	2 cut(s)	458, 700
BsuRI	GGCC	4 cut(s)	224, 642, 656, 815
BtgI	CCRYGG	1 cut(s)	421
BtsCI	GGATG	1 cut(s)	933
BtsI	GCAGTG	2 cut(s)	191, 259
BtsIMutI	CAGTG	3 cut(s)	191, 259, 705
Cac8I	GCNNGC	4 cut(s)	153, 266, 766, 984
CaiI	CAGNNNCTG	1 cut(s)	1043
CciI	TCATGA	1 cut(s)	201
Cfr13I	GGNCC	2 cut(s)	222, 223
CseI	GACGC	2 cut(s)	341, 425
CsiI	ACCWGGT	1 cut(s)	1042
Csp6I	GTAC	1 cut(s)	1094
CviAII	CATG	7 cut(s)	202, 422, 485, 614, 624, 638, 1099
CviQI	GTAC	1 cut(s)	1094
DdeI	CTNAG	2 cut(s)	593, 714
DpnI	GATC	5 cut(s)	209, 258, 345, 838, 1010
DpnII	GATC	5 cut(s)	207, 256, 343, 836, 1008
DraIII	CACNNNGTG	1 cut(s)	1046
EaeI	YGGCCR	1 cut(s)	813
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	421
Eco24I	GRGCYC	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	327
EcoRI	GAATTC	1 cut(s)	446
EcoRII	CCWGG	3 cut(s)	304, 651, 1042
EcoT14I	CCWWGG	1 cut(s)	421
EcoT38I	GRGCYC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	421
Esp3I	CGTCTC	2 cut(s)	324, 1067
FaeI	CATG	7 cut(s)	205, 425, 488, 617, 627, 641, 1102
FatI	CATG	7 cut(s)	201, 421, 484, 613, 623, 637, 1098
FauI	CCCGC	1 cut(s)	991
FblI	GTMKAC	1 cut(s)	1050
Fnu4HI	GCNGC	3 cut(s)	940, 980, 1038
FokI	GGATG	1 cut(s)	940
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	3 cut(s)	940, 980, 1038
FspBI	CTAG	1 cut(s)	197
GluI	GCNGC	3 cut(s)	940, 980, 1038
GsaI	CCCAGC	1 cut(s)	927
GsuI	CTGGAG	1 cut(s)	377
HaeIII	GGCC	4 cut(s)	224, 642, 656, 815
HgaI	GACGC	2 cut(s)	341, 425
Hin1I	GRCGYC	2 cut(s)	417, 750
Hin1II	CATG	7 cut(s)	205, 425, 488, 617, 627, 641, 1102
HincII	GTYRAC	1 cut(s)	876
HindII	GTYRAC	1 cut(s)	876
HindIII	AAGCTT	1 cut(s)	818
HinfI	GANTC	4 cut(s)	377, 402, 597, 780
HphI	GGTGA	3 cut(s)	715, 803, 854
Hpy166II	GTNNAC	3 cut(s)	876, 1051, 1096
Hpy188I	TCNGA	5 cut(s)	212, 317, 415, 478, 865
Hpy188III	TCNNGA	6 cut(s)	202, 239, 329, 524, 673, 824
Hpy8I	GTNNAC	3 cut(s)	876, 1051, 1096
Hpy99I	CGWCG	2 cut(s)	419, 1020
HpyAV	CCTTC	1 cut(s)	39
HpyCH4III	ACNGT	3 cut(s)	521, 869, 1055
HpyCH4IV	ACGT	2 cut(s)	750, 908
HpyCH4V	TGCA	4 cut(s)	268, 613, 774, 1037
HpyF10VI	GCNNNNNNNGC	6 cut(s)	168, 270, 639, 812, 854, 976
HpyF3I	CTNAG	2 cut(s)	593, 714
HpySE526I	ACGT	2 cut(s)	750, 908
Hsp92I	GRCGYC	2 cut(s)	417, 750
Hsp92II	CATG	7 cut(s)	205, 425, 488, 617, 627, 641, 1102
Kzo9I	GATC	5 cut(s)	207, 256, 343, 836, 1008
LmnI	GCTCC	4 cut(s)	396, 832, 991, 1006
Lsp1109I	GCAGC	3 cut(s)	926, 991, 1049
LweI	GCATC	1 cut(s)	747
MabI	ACCWGGT	1 cut(s)	1042
MaeI	CTAG	1 cut(s)	197
MaeII	ACGT	2 cut(s)	750, 908
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	5 cut(s)	209, 258, 345, 838, 1010
MbiI	CCGCTC	1 cut(s)	986
MboI	GATC	5 cut(s)	207, 256, 343, 836, 1008
MboII	GAAGA	5 cut(s)	16, 217, 353, 368, 1073
MhlI	GDGCHC	3 cut(s)	153, 226, 1060
MlsI	TGGCCA	1 cut(s)	815
MluNI	TGGCCA	1 cut(s)	815
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	7 cut(s)	206, 336, 392, 492, 599, 696, 1022
Mox20I	TGGCCA	1 cut(s)	815
MscI	TGGCCA	1 cut(s)	815
MseI	TTAA	1 cut(s)	510
Msp20I	TGGCCA	1 cut(s)	815
MspR9I	CCNGG	3 cut(s)	306, 653, 1044
MvaI	CCWGG	3 cut(s)	306, 653, 1044
MwoI	GCNNNNNNNGC	6 cut(s)	168, 270, 639, 812, 854, 976
NcoI	CCATGG	1 cut(s)	421
NdeII	GATC	5 cut(s)	207, 256, 343, 836, 1008
NlaIII	CATG	7 cut(s)	205, 425, 488, 617, 627, 641, 1102
NlaIV	GGNNCC	1 cut(s)	224
NspI	RCATGY	1 cut(s)	1102
PaeR7I	CTCGAG	1 cut(s)	327
PagI	TCATGA	1 cut(s)	201
PciI	ACATGT	1 cut(s)	1098
PfeI	GAWTC	4 cut(s)	377, 402, 597, 780
PkrI	GCNGC	3 cut(s)	941, 981, 1039
PscI	ACATGT	1 cut(s)	1098
Psp1406I	AACGTT	1 cut(s)	908
Psp6I	CCWGG	3 cut(s)	304, 651, 1042
PspFI	CCCAGC	1 cut(s)	923
PspGI	CCWGG	3 cut(s)	304, 651, 1042
PspN4I	GGNNCC	1 cut(s)	224
PspOMI	GGGCCC	1 cut(s)	222
PspPI	GGNCC	2 cut(s)	222, 223
PstNI	CAGNNNCTG	1 cut(s)	1043
RsaI	GTAC	1 cut(s)	1095
RsaNI	GTAC	1 cut(s)	1094
SaqAI	TTAA	1 cut(s)	510
SatI	GCNGC	3 cut(s)	940, 980, 1038
Sau3AI	GATC	5 cut(s)	207, 256, 343, 836, 1008
Sau96I	GGNCC	2 cut(s)	222, 223
ScrFI	CCNGG	3 cut(s)	306, 653, 1044
SduI	GDGCHC	3 cut(s)	153, 226, 1060
SetI	ASST	8 cut(s)	654, 753, 822, 850, 859, 911, 917, 1045
SexAI	ACCWGGT	1 cut(s)	1042
SfaNI	GCATC	1 cut(s)	747
Sfr274I	CTCGAG	1 cut(s)	327
SlaI	CTCGAG	1 cut(s)	327
SmlI	CTYRAG	3 cut(s)	327, 665, 933
SmoI	CTYRAG	3 cut(s)	327, 665, 933
SsiI	CCGC	3 cut(s)	271, 563, 984
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	3 cut(s)	304, 651, 1042
StyI	CCWWGG	1 cut(s)	421
TaaI	ACNGT	3 cut(s)	521, 869, 1055
TaiI	ACGT	2 cut(s)	753, 911
TaqI	TCGA	2 cut(s)	255, 328
TatI	WGTACW	1 cut(s)	1093
TfiI	GAWTC	4 cut(s)	377, 402, 597, 780
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TscAI	CASTG	3 cut(s)	198, 266, 705
TseI	GCWGC	3 cut(s)	939, 979, 1037
TspDTI	ATGAA	6 cut(s)	17, 27, 218, 626, 914, 1058
TspGWI	ACGGA	1 cut(s)	1004
TspRI	CASTG	3 cut(s)	198, 266, 705
XapI	RAATTY	3 cut(s)	299, 365, 446
XceI	RCATGY	1 cut(s)	1102
XcmI	CCANNNNNNNNNTGG	1 cut(s)	428
XhoI	CTCGAG	1 cut(s)	327
XmiI	GTMKAC	1 cut(s)	1050
XspI	CTAG	1 cut(s)	197
ZraI	GACGTC	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.