Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000757

Physical Location & Seq

Genomic Coordinates Forward (+)

82234689 .. 82235217

Gene Structure 529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53566

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGATGAAGACCAATGTGGACCAAACTCATATTATCCAATTGGGTCTTTCACTCTCTGGCCCATTTGGGAATTTACCGGTTTATGATGGTGCTTACTGTTGTTGGGATGTCTCGATTGATGTCCTGAAGCGGCAAGGAATAGACTTTTCGGAAAACAAATGCACTGGTATTTGTTCTGCAGACTTTGCTGAGGAGCTTGAGAGGTATGGGCTAGTGGAGTTGCTTCCTTGCTTGACTTGGGCTACTTTCCAGAGTGCATATGATTTTGGATACTTGACAAAGATGTTCACTGGGAACAAGGAATTGCCTGAGGATATCAAGGAGCTCATGGGCAATGTGAAGACATATTTTGGACCGAATGTGTACGACATCAAGTACATGATGAAGTTCTGTGATGGACTGTTTGGCGGTTTGAATAGCGTGGCAGATACCCTTGGCGTTGACCGTGTGGCTGGGAGTAGCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CAF1 RVT_3

Protein Analysis

155

Amino Acids

17.23

Weight (kDa)

4.6

Isoelectric Point (pI)

33.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06450 AT1G27820 AT1G27890 AT1G61470 AT3G44240
fragaria_vesca	FvH4_6g28110 FvH4_6g28140 FvH4_6g29280 FvH4_6g29280
malus_domestica	MD03G1041900.v1.1 MD09G1229300.v1.1 MD11G1042700.v1.1 MD12G1082100.v1.1 MD14G1080800.v1.1
prunus_persica	Prupe.1G188200_v2.0.a1 Prupe.1G190800_v2.0.a1 Prupe.1G190900_v2.0.a1 Prupe.3G105100_v2.0.a1 Prupe.7G010200_v2.0.a1
pyrus_communis	pycom09g14790 pycom14g07010
rosa_chinensis	RchiOBHm_Chr2g0132091 RchiOBHm_Chr2g0132101 RchiOBHm_Chr2g0134441 RchiOBHm_Chr2g0134461 RchiOBHm_Chr2g0136851 RchiOBHm_Chr2g0167821 RchiOBHm_Chr2g0167861 RchiOBHm_Chr2g0167901 RchiOBHm_Chr2g0167921 RchiOBHm_Chr6g0266841
rosa_laevigata	RLG00000019225 RLG00000019226 RLG00000019393
rosa_multiflora	Rmu_sc0001299.1_g000004 Rmu_sc0005571.1_g000018
rosa_roxburghii	Rroxscaffold_2G00110210 Rroxscaffold_2G00110240 Rroxscaffold_2G00112400 Rroxscaffold_3G00239330 Rroxscaffold_4G00313080
rosa_rugosa	Rorug02G0302000 Rorug02G0302200 Rorug02G0317200 Rorug02G0317200 Rorug03G0220600
rosa_samantha	Rh2AG355100 Rh2AG355200 Rh2AG369800 Rh2AG369900 Rh2AG384800 Rh2CG338700 Rh2CG338800 Rh2CG353700 Rh2CG371400 Rh2DG370100 Rh2DG377900 Rh2DG378000 Rh2DG392800 Rh2DG392900 Rh2DG408200 Rh6BG148800 Rh6BG149300 Rh6CG159200 Rh6DG133000 Rh6DG133400
rosa_wichuraiana	Rw1G013790 Rw2G028830 Rw2G028840 Rw2G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	130, 408
AcsI	RAATTY	1 cut(s)	70
AcuI	CTGAAG	1 cut(s)	146
AfaI	GTAC	2 cut(s)	365, 377
AgeI	ACCGGT	1 cut(s)	76
AgsI	TTSAA	1 cut(s)	415
AluBI	AGCT	2 cut(s)	196, 325
AluI	AGCT	2 cut(s)	196, 325
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	1 cut(s)	115
AoxI	GGCC	1 cut(s)	58
ApoI	RAATTY	1 cut(s)	70
AsiGI	ACCGGT	1 cut(s)	76
AspS9I	GGNCC	3 cut(s)	19, 59, 353
AvaII	GGWCC	2 cut(s)	19, 353
AxyI	CCTNAGG	1 cut(s)	309
BanII	GRGCYC	1 cut(s)	327
BbsI	GAAGAC	2 cut(s)	14, 347
Bbv12I	GWGCWC	1 cut(s)	327
BbvCI	CCTCAGC	1 cut(s)	189
BccI	CCATC	2 cut(s)	80, 389
BciVI	GTATCC	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	2 cut(s)	212, 466
BfmI	CTRYAG	1 cut(s)	177
BfuI	GTATCC	1 cut(s)	263
BisI	GCNGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	132
Bme18I	GGWCC	2 cut(s)	19, 353
BmgT120I	GGNCC	3 cut(s)	19, 59, 353
BmrI	ACTGGG	1 cut(s)	300
BmuI	ACTGGG	1 cut(s)	300
BpiI	GAAGAC	2 cut(s)	14, 347
Bpu10I	CCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	433
BsaWI	WCCGGW	1 cut(s)	76
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	2 cut(s)	169, 295
Bse21I	CCTNAGG	1 cut(s)	309
Bse3DI	GCAATG	1 cut(s)	340
BseDI	CCNNGG	1 cut(s)	433
BseGI	GGATG	1 cut(s)	112
BseMI	GCAATG	1 cut(s)	340
BseMII	CTCAG	2 cut(s)	180, 300
BseNI	ACTGG	2 cut(s)	169, 295
BseRI	GAGGAG	1 cut(s)	206
BseYI	CCCAGC	1 cut(s)	452
BshFI	GGCC	1 cut(s)	60
BshTI	ACCGGT	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	77
BsmAI	GTCTC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	327
BspACI	CCGC	2 cut(s)	130, 408
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	2 cut(s)	181, 301
BspMAI	CTGCAG	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	340
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	2 cut(s)	169, 295
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	433
BssT1I	CCWWGG	1 cut(s)	433
Bst4CI	ACNGT	3 cut(s)	98, 402, 446
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstDEI	CTNAG	2 cut(s)	189, 309
BstF5I	GGATG	1 cut(s)	112
BstMAI	GTCTC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstSFI	CTRYAG	1 cut(s)	177
BstV2I	GAAGAC	2 cut(s)	14, 347
Bsu36I	CCTNAGG	1 cut(s)	309
BsuI	GTATCC	1 cut(s)	263
BsuRI	GGCC	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	112
BtsIMutI	CAGTG	2 cut(s)	162, 288
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	3 cut(s)	19, 59, 353
Csp6I	GTAC	2 cut(s)	364, 376
CspAI	ACCGGT	1 cut(s)	76
CviAII	CATG	2 cut(s)	328, 379
CviJI	RGCY	7 cut(s)	60, 196, 211, 242, 325, 452, 462
CviKI_1	RGCY	7 cut(s)	60, 196, 211, 242, 325, 452, 462
CviQI	GTAC	2 cut(s)	364, 376
DdeI	CTNAG	2 cut(s)	189, 309
Ecl136II	GAGCTC	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	433
Eco24I	GRGCYC	1 cut(s)	327
Eco32I	GATATC	1 cut(s)	316
Eco47I	GGWCC	2 cut(s)	19, 353
Eco53kI	GAGCTC	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	146
Eco81I	CCTNAGG	1 cut(s)	309
EcoICRI	GAGCTC	1 cut(s)	325
EcoRV	GATATC	1 cut(s)	316
EcoT14I	CCWWGG	1 cut(s)	433
EcoT38I	GRGCYC	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	433
FaeI	CATG	2 cut(s)	331, 382
FaiI	YATR	8 cut(s)	30, 84, 207, 259, 261, 329, 346, 380
FatI	CATG	2 cut(s)	327, 378
FauNDI	CATATG	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	131
FokI	GGATG	1 cut(s)	119
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	1 cut(s)	131
FspBI	CTAG	2 cut(s)	212, 466
GluI	GCNGC	1 cut(s)	131
GsaI	CCCAGC	1 cut(s)	456
HaeIII	GGCC	1 cut(s)	60
HapII	CCGG	1 cut(s)	77
Hin1II	CATG	2 cut(s)	331, 382
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HpaII	CCGG	1 cut(s)	77
Hpy166II	GTNNAC	4 cut(s)	19, 288, 364, 442
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	3 cut(s)	112, 124, 250
Hpy8I	GTNNAC	4 cut(s)	19, 288, 364, 442
HpyCH4III	ACNGT	3 cut(s)	98, 402, 446
HpyCH4V	TGCA	3 cut(s)	162, 179, 257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	2 cut(s)	189, 309
Hsp92II	CATG	2 cut(s)	331, 382
LmnI	GCTCC	2 cut(s)	193, 322
LpnPI	CCDG	8 cut(s)	42, 90, 137, 150, 263, 276, 321, 438
MaeI	CTAG	2 cut(s)	212, 466
MboII	GAAGA	2 cut(s)	19, 352
MfeI	CAATTG	1 cut(s)	38
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	3 cut(s)	38, 70, 302
MnlI	CCTC	3 cut(s)	184, 195, 304
MspI	CCGG	1 cut(s)	77
MunI	CAATTG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	185
NdeI	CATATG	1 cut(s)	259
NlaIII	CATG	2 cut(s)	331, 382
PinAI	ACCGGT	1 cut(s)	76
PkrI	GCNGC	1 cut(s)	132
Psp124BI	GAGCTC	1 cut(s)	327
PspFI	CCCAGC	1 cut(s)	452
PspPI	GGNCC	3 cut(s)	19, 59, 353
PstI	CTGCAG	1 cut(s)	181
RsaI	GTAC	2 cut(s)	365, 377
RsaNI	GTAC	2 cut(s)	364, 376
SacI	GAGCTC	1 cut(s)	327
SatI	GCNGC	1 cut(s)	131
Sau96I	GGNCC	3 cut(s)	19, 59, 353
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	3 cut(s)	198, 206, 327
SfcI	CTRYAG	1 cut(s)	177
SinI	GGWCC	2 cut(s)	19, 353
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	3 cut(s)	38, 70, 302
SsiI	CCGC	2 cut(s)	130, 408
SspMI	CTAG	2 cut(s)	212, 466
SstI	GAGCTC	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	433
TaaI	ACNGT	3 cut(s)	98, 402, 446
TaqI	TCGA	1 cut(s)	113
TaqII	GACCGA	1 cut(s)	370
TasI	AATT	3 cut(s)	38, 70, 302
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	1 cut(s)	133
TscAI	CASTG	2 cut(s)	169, 295
TspDTI	ATGAA	2 cut(s)	20, 398
TspRI	CASTG	2 cut(s)	169, 295
VpaK11BI	GGWCC	2 cut(s)	19, 353
XapI	RAATTY	1 cut(s)	70
XspI	CTAG	2 cut(s)	212, 466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.