Rorug02G0302200

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000757
Physical Location & Seq
Reverse (-)
33734557 .. 33736800
2244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0302200.1

Sequence Viewer

Length: 636 bp
ATGGGTTTTCAATTGCCTCGAATTGCTAGCACAAAGACACCAGATATCCCAAAAGGCTACTTTGCAGTCTATGTTGGAGAGAGCCAGAAGAAACGATTTGTGGTTCCAATATCATATTTGAACCAACCTTTGTTTCAGAATTTGCTGAGTCAAGCTGAAGAAGAATTTGGATACCATCATCCAATGGGTGGTATCACAATTCCTTGTAGTGAAGACACCTTCATTGATCTCACTTCCCGCTTAAAAGCCATTGGTTTCAAGCTGCCTGGAATTGTTAGCCCCAAAAGAAGTCTTACCCGATCTTCATCTAATGCAAACAAGACCGCTTCAAAGACCTTAGATATCCCAAAAGGCTATTTTGCGGTCTATGTTGGAGAGAGCCAGAAGAAGCGATTTGTGATTCCAATATCATACTTGAACCAACCTTCATTCATGGATTTGCTGAGTCAAGCTGAAGAAGAATTTGGATACCATCATCCCATGGGCGGTATCACAATTCCATGCAGTGAGGACACCTTCCTTGATCTCACTTCCAACTTAAGTGTGTGTCTGAATGAAATGAAAATGGATATTCAAAAGGCTTCAGAATTTCAGAACATGCTGCTGAGTCAAAATGAAGAAGAGGCGAGGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CAF1

Protein Analysis

211

Amino Acids

23.67

Weight (kDa)

6.1

Isoelectric Point (pI)

44.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 10 - 80 1.5e-23 Auxin responsive protein
Auxin_inducible PF02519 98 - 178 3.5e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 188
AciI CCGC 4 cut(s) 238, 324, 362, 486
AcsI RAATTY 4 cut(s) 139, 164, 461, 587
AcuI CTGAAG 3 cut(s) 177, 474, 567
AfiI CCNNNNNNNGG 2 cut(s) 188, 485
AflII CTTAAG 1 cut(s) 538
AgsI TTSAA 6 cut(s) 11, 121, 259, 330, 418, 575
AjnI CCWGG 1 cut(s) 265
AjuI GAANNNNNNNTTGG 6 cut(s) 117, 149, 150, 182, 447, 479
AluBI AGCT 3 cut(s) 155, 262, 452
AluI AGCT 3 cut(s) 155, 262, 452
AoxI GGCC 1 cut(s) 629
ApeKI GCWGC 2 cut(s) 262, 601
ApoI RAATTY 4 cut(s) 139, 164, 461, 587
AsuNHI GCTAGC 1 cut(s) 26
BbsI GAAGAC 1 cut(s) 219
BbvI GCAGC 2 cut(s) 249, 588
BccI CCATC 2 cut(s) 183, 480
BciT130I CCWGG 1 cut(s) 267
BciVI GTATCC 2 cut(s) 164, 461
BfaI CTAG 1 cut(s) 27
BfrI CTTAAG 1 cut(s) 538
BfuI GTATCC 2 cut(s) 164, 461
BisI GCNGC 2 cut(s) 263, 602
BlsI GCNGC 2 cut(s) 264, 603
Bme1390I CCNGG 1 cut(s) 267
BmiI GGNNCC 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 267
BmtI GCTAGC 1 cut(s) 30
BpiI GAAGAC 1 cut(s) 219
BsaBI GATNNNNATC 1 cut(s) 304
BsaJI CCNNGG 1 cut(s) 480
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 485
Bse8I GATNNNNATC 1 cut(s) 304
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 480
BseGI GGATG 2 cut(s) 178, 475
BseJI GATNNNNATC 1 cut(s) 304
BseLI CCNNNNNNNGG 2 cut(s) 188, 485
BseMII CTCAG 3 cut(s) 137, 434, 596
BseXI GCAGC 2 cut(s) 249, 588
BshFI GGCC 1 cut(s) 631
BslI CCNNNNNNNGG 2 cut(s) 188, 485
BsnI GGCC 1 cut(s) 631
Bsp143I GATC 3 cut(s) 226, 299, 523
Bsp19I CCATGG 1 cut(s) 480
BspACI CCGC 4 cut(s) 238, 324, 362, 486
BspANI GGCC 1 cut(s) 631
BspCNI CTCAG 3 cut(s) 138, 435, 597
BspLI GGNNCC 1 cut(s) 105
BspOI GCTAGC 1 cut(s) 30
BspTI CTTAAG 1 cut(s) 538
BssECI CCNNGG 1 cut(s) 480
BssMI GATC 3 cut(s) 226, 299, 523
BssT1I CCWWGG 1 cut(s) 480
Bst2UI CCWGG 1 cut(s) 267
Bst6I CTCTTC 1 cut(s) 615
BstAFI CTTAAG 1 cut(s) 538
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 4 cut(s) 146, 337, 443, 605
BstDSI CCRYGG 1 cut(s) 480
BstF5I GGATG 2 cut(s) 178, 475
BstKTI GATC 3 cut(s) 229, 302, 526
BstMBI GATC 3 cut(s) 226, 299, 523
BstNI CCWGG 1 cut(s) 267
BstNSI RCATGY 1 cut(s) 601
BstSCI CCNGG 1 cut(s) 265
BstV1I GCAGC 2 cut(s) 249, 588
BstV2I GAAGAC 1 cut(s) 219
BsuI GTATCC 2 cut(s) 164, 461
BsuRI GGCC 1 cut(s) 631
BtgI CCRYGG 1 cut(s) 480
BtsCI GGATG 2 cut(s) 178, 475
BtsI GCAGTG 1 cut(s) 511
BtsIMutI CAGTG 1 cut(s) 511
Cac8I GCNNGC 1 cut(s) 28
CviAII CATG 5 cut(s) 433, 481, 501, 598, 633
DdeI CTNAG 4 cut(s) 146, 337, 443, 605
DpnI GATC 3 cut(s) 228, 301, 525
DpnII GATC 3 cut(s) 226, 299, 523
Eam1104I CTCTTC 1 cut(s) 615
EarI CTCTTC 1 cut(s) 615
Eco130I CCWWGG 1 cut(s) 480
Eco32I GATATC 2 cut(s) 46, 343
Eco57I CTGAAG 3 cut(s) 177, 474, 567
EcoRII CCWGG 1 cut(s) 265
EcoRV GATATC 2 cut(s) 46, 343
EcoT14I CCWWGG 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 480
FaeI CATG 5 cut(s) 436, 484, 504, 601, 636
FaiI YATR 9 cut(s) 72, 115, 369, 412, 434, 482, 502, 599, 634
FatI CATG 5 cut(s) 432, 480, 500, 597, 632
FauI CCCGC 1 cut(s) 245
Fnu4HI GCNGC 2 cut(s) 263, 602
FokI GGATG 2 cut(s) 165, 462
Fsp4HI GCNGC 2 cut(s) 263, 602
FspBI CTAG 1 cut(s) 27
GluI GCNGC 2 cut(s) 263, 602
HaeIII GGCC 1 cut(s) 631
Hin1II CATG 5 cut(s) 436, 484, 504, 601, 636
HinfI GANTC 4 cut(s) 148, 400, 445, 607
Hpy188I TCNGA 4 cut(s) 138, 552, 586, 594
HpyAV CCTTC 3 cut(s) 229, 435, 526
HpyCH4V TGCA 3 cut(s) 65, 314, 504
HpyF3I CTNAG 4 cut(s) 146, 337, 443, 605
Hsp92II CATG 5 cut(s) 436, 484, 504, 601, 636
Kzo9I GATC 3 cut(s) 226, 299, 523
LpnPI CCDG 5 cut(s) 54, 98, 252, 279, 395
Lsp1109I GCAGC 2 cut(s) 249, 588
MaeI CTAG 1 cut(s) 27
MalI GATC 3 cut(s) 228, 301, 525
MboI GATC 3 cut(s) 226, 299, 523
MfeI CAATTG 1 cut(s) 11
MluCI AATT 9 cut(s) 11, 21, 139, 164, 198, 270, 461, 495, 587
MlyI GAGTC 3 cut(s) 157, 454, 616
MmeI TCCRAC 3 cut(s) 55, 352, 558
MnlI CCTC 4 cut(s) 27, 502, 616, 621
MseI TTAA 2 cut(s) 242, 539
MspCI CTTAAG 1 cut(s) 538
MspR9I CCNGG 1 cut(s) 267
MunI CAATTG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 267
NcoI CCATGG 1 cut(s) 480
NdeII GATC 3 cut(s) 226, 299, 523
NheI GCTAGC 1 cut(s) 26
NlaIII CATG 5 cut(s) 436, 484, 504, 601, 636
NlaIV GGNNCC 1 cut(s) 105
NspI RCATGY 1 cut(s) 601
PfeI GAWTC 1 cut(s) 400
PflMI CCANNNNNTGG 1 cut(s) 188
PkrI GCNGC 2 cut(s) 264, 603
PleI GAGTC 3 cut(s) 156, 453, 615
PpsI GAGTC 3 cut(s) 156, 453, 615
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 105
SaqAI TTAA 2 cut(s) 242, 539
SatI GCNGC 2 cut(s) 263, 602
Sau3AI GATC 3 cut(s) 226, 299, 523
SchI GAGTC 3 cut(s) 157, 454, 616
ScrFI CCNGG 1 cut(s) 267
SetI ASST 8 cut(s) 130, 157, 221, 264, 338, 427, 454, 518
SmlI CTYRAG 1 cut(s) 538
SmoI CTYRAG 1 cut(s) 538
Sse9I AATT 9 cut(s) 11, 21, 139, 164, 198, 270, 461, 495, 587
SsiI CCGC 4 cut(s) 238, 324, 362, 486
SspMI CTAG 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 265
StyI CCWWGG 1 cut(s) 480
TaqI TCGA 1 cut(s) 19
TasI AATT 9 cut(s) 11, 21, 139, 164, 198, 270, 461, 495, 587
TfiI GAWTC 1 cut(s) 400
Tru1I TTAA 2 cut(s) 242, 539
Tru9I TTAA 2 cut(s) 242, 539
TscAI CASTG 1 cut(s) 511
TseI GCWGC 2 cut(s) 262, 601
TspDTI ATGAA 7 cut(s) 211, 294, 417, 421, 570, 575, 630
TspRI CASTG 1 cut(s) 511
Van91I CCANNNNNTGG 1 cut(s) 188
Vha464I CTTAAG 1 cut(s) 538
XapI RAATTY 4 cut(s) 139, 164, 461, 587
XceI RCATGY 1 cut(s) 601
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.