Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0000757

Physical Location & Seq

Genomic Coordinates Reverse (-)

6966562 .. 6967176

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g07010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGCACAGAGGGCGCCTCTTATGGGTGAGCTTCCACGGCCTCTATGACTCGGCCTATGTGATGAAGCTCATGACTCGGAAGGCCATGCCGAGCTCACCTACCGAGTTCGCCGCGATGGCGGGAAATCTATTTGAGAGGGTTTGTGACCTGAAATTTATGGCCAAATTCTACCAGGGCCTGCTTGGGGGCGAAATTGGGCTCGAGAGGATGGCGAAAATCCTCCGAGTGCAGCGTTACGGTGATGCCCACCAAGCGGGTTCCGATAGTTTGTTAACGGCTGATGCATTTGTGAAGATGAGGGCTCAATTTGGGTTGAAGCCAGGGATGTATGAGGGGTTTCTATATGGGTTAAGTCCAAATATTTGTGCTTCTTCTGTACACAGGGTTAGAGCTCCTCCTGGTCAGGTTATCCTTGTCCCTGTTGTACCCACTAGACCTGTCATTCTCGCCCGCCGCTCCTCCTCCTCCCGTGATCAGTCCTTCCAGAGCCATCACCAGGCTTCGCCTATGCTCTATCCATATCCTTCTCCAGCTCCGATGTTTATGCATAGGCCTATGTGCATTCCTTTTCATGCCTTGCCTCAAGCCCCTCCCCACTATCAGATTCACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000288 GO:0000291 GO:0000932 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004535 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017148 GO:0019222 GO:0019439 GO:0030014 GO:0030015 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032991 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CAF1

Protein Analysis

205

Amino Acids

22.91

Weight (kDa)

9.91

Isoelectric Point (pI)

71.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06450 AT1G27820 AT1G27890 AT1G61470 AT3G44240
fragaria_vesca	FvH4_6g28110 FvH4_6g28140 FvH4_6g29280 FvH4_6g29280
malus_domestica	MD03G1041900.v1.1 MD09G1229300.v1.1 MD11G1042700.v1.1 MD12G1082100.v1.1 MD14G1080800.v1.1
prunus_persica	Prupe.1G188200_v2.0.a1 Prupe.1G190800_v2.0.a1 Prupe.1G190900_v2.0.a1 Prupe.3G105100_v2.0.a1 Prupe.7G010200_v2.0.a1
pyrus_communis	pycom09g14790 pycom14g07010
rosa_chinensis	RchiOBHm_Chr2g0132091 RchiOBHm_Chr2g0132101 RchiOBHm_Chr2g0134441 RchiOBHm_Chr2g0134461 RchiOBHm_Chr2g0136851 RchiOBHm_Chr2g0167821 RchiOBHm_Chr2g0167861 RchiOBHm_Chr2g0167901 RchiOBHm_Chr2g0167921 RchiOBHm_Chr6g0266841
rosa_laevigata	RLG00000019225 RLG00000019226 RLG00000019393
rosa_multiflora	Rmu_sc0001299.1_g000004 Rmu_sc0005571.1_g000018
rosa_roxburghii	Rroxscaffold_2G00110210 Rroxscaffold_2G00110240 Rroxscaffold_2G00112400 Rroxscaffold_3G00239330 Rroxscaffold_4G00313080
rosa_rugosa	Rorug02G0302000 Rorug02G0302200 Rorug02G0317200 Rorug02G0317200 Rorug03G0220600
rosa_samantha	Rh2AG355100 Rh2AG355200 Rh2AG369800 Rh2AG369900 Rh2AG384800 Rh2CG338700 Rh2CG338800 Rh2CG353700 Rh2CG371400 Rh2DG370100 Rh2DG377900 Rh2DG378000 Rh2DG392800 Rh2DG392900 Rh2DG408200 Rh6BG148800 Rh6BG149300 Rh6CG159200 Rh6DG133000 Rh6DG133400
rosa_wichuraiana	Rw1G013790 Rw2G028830 Rw2G028840 Rw2G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	12
AccBSI	CCGCTC	1 cut(s)	456
AccII	CGCG	1 cut(s)	113
AciI	CCGC	5 cut(s)	111, 119, 254, 451, 454
AcoI	YGGCCR	1 cut(s)	159
AcsI	RAATTY	2 cut(s)	152, 164
AcyI	GRCGYC	1 cut(s)	13
AfaI	GTAC	2 cut(s)	378, 426
AfiI	CCNNNNNNNGG	4 cut(s)	22, 184, 253, 496
AflIII	ACRYGT	1 cut(s)	609
AgsI	TTSAA	1 cut(s)	316
AjnI	CCWGG	4 cut(s)	171, 319, 397, 495
AluBI	AGCT	5 cut(s)	30, 67, 93, 392, 533
AluI	AGCT	5 cut(s)	30, 67, 93, 392, 533
Alw21I	GWGCWC	2 cut(s)	95, 394
AlwNI	CAGNNNCTG	1 cut(s)	178
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	6 cut(s)	37, 51, 81, 159, 175, 551
ApeKI	GCWGC	1 cut(s)	229
ApoI	RAATTY	2 cut(s)	152, 164
AspLEI	GCGC	1 cut(s)	15
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	4 cut(s)	37, 87, 251, 485
AvaI	CYCGRG	1 cut(s)	200
BalI	TGGCCA	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	12
BanII	GRGCYC	4 cut(s)	95, 201, 304, 394
Bbv12I	GWGCWC	2 cut(s)	95, 394
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	3 cut(s)	109, 202, 498
BceAI	ACGGC	2 cut(s)	52, 291
BcgI	CGANNNNNNTGC	2 cut(s)	526, 560
BciT130I	CCWGG	4 cut(s)	173, 321, 399, 497
BclI	TGATCA	1 cut(s)	472
BfaI	CTAG	1 cut(s)	432
BfoI	RGCGCY	1 cut(s)	16
BglI	GCCNNNNNGGC	1 cut(s)	116
BisI	GCNGC	3 cut(s)	111, 230, 454
BlsI	GCNGC	3 cut(s)	112, 231, 455
Bme1390I	CCNGG	4 cut(s)	173, 321, 399, 497
BmeT110I	CYCGRG	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	2 cut(s)	14, 259
BmrFI	CCNGG	4 cut(s)	173, 321, 399, 497
BmsI	GCATC	2 cut(s)	232, 271
BplI	GAGNNNNNCTC	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	513
BpuEI	CTTGAG	1 cut(s)	567
BsaHI	GRCGYC	1 cut(s)	13
BsaJI	CCNNGG	3 cut(s)	34, 172, 320
Bsc4I	CCNNNNNNNGG	4 cut(s)	22, 184, 253, 496
BseBI	CCWGG	4 cut(s)	173, 321, 399, 497
BseDI	CCNNGG	3 cut(s)	34, 172, 320
BseGI	GGATG	2 cut(s)	213, 330
BseLI	CCNNNNNNNGG	4 cut(s)	22, 184, 253, 496
BseRI	GAGGAG	4 cut(s)	384, 448, 451, 454
BseXI	GCAGC	1 cut(s)	241
BsgI	GTGCAG	1 cut(s)	248
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	6 cut(s)	39, 53, 83, 161, 177, 553
BshNI	GGYRCC	1 cut(s)	12
BsiHKAI	GWGCWC	2 cut(s)	95, 394
BsiHKCI	CYCGRG	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	4 cut(s)	22, 184, 253, 496
BsmFI	GGGAC	1 cut(s)	401
BsmI	GAATGC	1 cut(s)	561
BsnI	GGCC	6 cut(s)	39, 53, 83, 161, 177, 553
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	4 cut(s)	95, 201, 304, 394
Bsp1407I	TGTACA	1 cut(s)	376
Bsp143I	GATC	1 cut(s)	472
BspACI	CCGC	5 cut(s)	111, 119, 254, 451, 454
BspANI	GGCC	6 cut(s)	39, 53, 83, 161, 177, 553
BspFNI	CGCG	1 cut(s)	113
BspHI	TCATGA	1 cut(s)	69
BspLI	GGNNCC	2 cut(s)	14, 259
BspT107I	GGYRCC	1 cut(s)	12
BsrBI	CCGCTC	1 cut(s)	456
BsrGI	TGTACA	1 cut(s)	376
BssECI	CCNNGG	3 cut(s)	34, 172, 320
BssMI	GATC	1 cut(s)	472
BssNI	GRCGYC	1 cut(s)	13
Bst2UI	CCWGG	4 cut(s)	173, 321, 399, 497
Bst4CI	ACNGT	1 cut(s)	239
BstACI	GRCGYC	1 cut(s)	13
BstAUI	TGTACA	1 cut(s)	376
BstC8I	GCNNGC	2 cut(s)	179, 451
BstDSI	CCRYGG	1 cut(s)	34
BstF5I	GGATG	2 cut(s)	213, 330
BstFNI	CGCG	1 cut(s)	113
BstH2I	RGCGCY	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	1 cut(s)	475
BstMBI	GATC	1 cut(s)	472
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 36, 116, 251
BstNI	CCWGG	4 cut(s)	173, 321, 399, 497
BstNSI	RCATGY	1 cut(s)	613
BstSCI	CCNGG	4 cut(s)	171, 319, 397, 495
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	241
BsuRI	GGCC	6 cut(s)	39, 53, 83, 161, 177, 553
BtgI	CCRYGG	1 cut(s)	34
BtgZI	GCGATG	1 cut(s)	128
BtsCI	GGATG	2 cut(s)	213, 330
Cac8I	GCNNGC	2 cut(s)	179, 451
CaiI	CAGNNNCTG	1 cut(s)	178
CciI	TCATGA	1 cut(s)	69
CfoI	GCGC	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	175
Csp6I	GTAC	2 cut(s)	377, 425
CviAII	CATG	4 cut(s)	70, 85, 572, 610
CviQI	GTAC	2 cut(s)	377, 425
DinI	GGCGCC	1 cut(s)	14
DpnI	GATC	1 cut(s)	474
DpnII	GATC	1 cut(s)	472
EaeI	YGGCCR	1 cut(s)	159
Ecl136II	GAGCTC	2 cut(s)	93, 392
Eco147I	AGGCCT	1 cut(s)	553
Eco24I	GRGCYC	4 cut(s)	95, 201, 304, 394
Eco53kI	GAGCTC	2 cut(s)	93, 392
Eco88I	CYCGRG	1 cut(s)	200
EcoICRI	GAGCTC	2 cut(s)	93, 392
EcoO109I	RGGNCCY	1 cut(s)	175
EcoRII	CCWGG	4 cut(s)	171, 319, 397, 495
EcoT22I	ATGCAT	2 cut(s)	286, 549
EcoT38I	GRGCYC	4 cut(s)	95, 201, 304, 394
EgeI	GGCGCC	1 cut(s)	14
EheI	GGCGCC	1 cut(s)	14
FaeI	CATG	4 cut(s)	73, 88, 575, 613
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	4 cut(s)	69, 84, 571, 609
FauI	CCCGC	3 cut(s)	112, 247, 458
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	3 cut(s)	111, 230, 454
FokI	GGATG	2 cut(s)	220, 337
FriOI	GRGCYC	4 cut(s)	95, 201, 304, 394
Fsp4HI	GCNGC	3 cut(s)	111, 230, 454
FspBI	CTAG	1 cut(s)	432
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	3 cut(s)	111, 230, 454
GsuI	CTGGAG	1 cut(s)	513
HaeII	RGCGCY	1 cut(s)	16
HaeIII	GGCC	6 cut(s)	39, 53, 83, 161, 177, 553
HhaI	GCGC	1 cut(s)	15
Hin1I	GRCGYC	1 cut(s)	13
Hin1II	CATG	4 cut(s)	73, 88, 575, 613
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HincII	GTYRAC	1 cut(s)	273
HindII	GTYRAC	1 cut(s)	273
HinfI	GANTC	3 cut(s)	47, 73, 604
HpaI	GTTAAC	1 cut(s)	273
HphI	GGTGA	4 cut(s)	37, 87, 251, 485
Hpy166II	GTNNAC	2 cut(s)	273, 379
Hpy188I	TCNGA	5 cut(s)	78, 224, 262, 537, 603
Hpy188III	TCNNGA	3 cut(s)	70, 202, 484
Hpy8I	GTNNAC	2 cut(s)	273, 379
HpyAV	CCTTC	3 cut(s)	73, 490, 534
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4V	TGCA	5 cut(s)	4, 229, 284, 547, 561
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 36, 116, 251
Hsp92I	GRCGYC	1 cut(s)	13
Hsp92II	CATG	4 cut(s)	73, 88, 575, 613
HspAI	GCGC	1 cut(s)	13
KasI	GGCGCC	1 cut(s)	12
Ksp22I	TGATCA	1 cut(s)	472
KspAI	GTTAAC	1 cut(s)	273
Kzo9I	GATC	1 cut(s)	472
LmnI	GCTCC	3 cut(s)	397, 461, 538
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	2 cut(s)	232, 271
MaeI	CTAG	1 cut(s)	432
MaeIII	GTNAC	2 cut(s)	143, 233
MalI	GATC	1 cut(s)	474
MbiI	CCGCTC	1 cut(s)	456
MboI	GATC	1 cut(s)	472
MboII	GAAGA	2 cut(s)	304, 363
MhlI	GDGCHC	4 cut(s)	95, 201, 304, 394
MlsI	TGGCCA	1 cut(s)	161
MluCI	AATT	4 cut(s)	152, 164, 192, 305
MluNI	TGGCCA	1 cut(s)	161
Mly113I	GGCGCC	1 cut(s)	13
MlyI	GAGTC	2 cut(s)	41, 67
Mox20I	TGGCCA	1 cut(s)	161
Mph1103I	ATGCAT	2 cut(s)	286, 549
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	2 cut(s)	272, 350
Msp20I	TGGCCA	1 cut(s)	161
MspR9I	CCNGG	4 cut(s)	173, 321, 399, 497
Mva1269I	GAATGC	1 cut(s)	561
MvaI	CCWGG	4 cut(s)	173, 321, 399, 497
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	4 cut(s)	10, 36, 116, 251
NarI	GGCGCC	1 cut(s)	13
NdeII	GATC	1 cut(s)	472
NlaIII	CATG	4 cut(s)	73, 88, 575, 613
NlaIV	GGNNCC	2 cut(s)	14, 259
NmeAIII	GCCGAG	2 cut(s)	29, 114
NmuCI	GTSAC	1 cut(s)	143
NsiI	ATGCAT	2 cut(s)	286, 549
NspI	RCATGY	1 cut(s)	613
PaeR7I	CTCGAG	1 cut(s)	200
PagI	TCATGA	1 cut(s)	69
PceI	AGGCCT	1 cut(s)	553
PciI	ACATGT	1 cut(s)	609
PctI	GAATGC	1 cut(s)	561
PfeI	GAWTC	1 cut(s)	604
PkrI	GCNGC	3 cut(s)	112, 231, 455
PleI	GAGTC	2 cut(s)	41, 67
PluTI	GGCGCC	1 cut(s)	16
PpsI	GAGTC	2 cut(s)	41, 67
PscI	ACATGT	1 cut(s)	609
Psp124BI	GAGCTC	2 cut(s)	95, 394
Psp6I	CCWGG	4 cut(s)	171, 319, 397, 495
PspGI	CCWGG	4 cut(s)	171, 319, 397, 495
PspN4I	GGNNCC	2 cut(s)	14, 259
PspPI	GGNCC	1 cut(s)	175
PstNI	CAGNNNCTG	1 cut(s)	178
RsaI	GTAC	2 cut(s)	378, 426
RsaNI	GTAC	2 cut(s)	377, 425
SacI	GAGCTC	2 cut(s)	95, 394
SaqAI	TTAA	2 cut(s)	272, 350
SatI	GCNGC	3 cut(s)	111, 230, 454
Sau3AI	GATC	1 cut(s)	472
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	2 cut(s)	41, 67
ScrFI	CCNGG	4 cut(s)	173, 321, 399, 497
SduI	GDGCHC	4 cut(s)	95, 201, 304, 394
SetI	ASST	9 cut(s)	32, 69, 95, 100, 150, 394, 408, 439, 535
SfaNI	GCATC	2 cut(s)	232, 271
SfoI	GGCGCC	1 cut(s)	14
Sfr274I	CTCGAG	1 cut(s)	200
SlaI	CTCGAG	1 cut(s)	200
SmlI	CTYRAG	2 cut(s)	200, 582
SmoI	CTYRAG	2 cut(s)	200, 582
Sse9I	AATT	4 cut(s)	152, 164, 192, 305
SseBI	AGGCCT	1 cut(s)	553
SsiI	CCGC	5 cut(s)	111, 119, 254, 451, 454
SspDI	GGCGCC	1 cut(s)	12
SspI	AATATT	1 cut(s)	361
SspMI	CTAG	1 cut(s)	432
SstI	GAGCTC	2 cut(s)	95, 394
StuI	AGGCCT	1 cut(s)	553
StyD4I	CCNGG	4 cut(s)	171, 319, 397, 495
TaaI	ACNGT	1 cut(s)	239
TaqI	TCGA	1 cut(s)	201
TasI	AATT	4 cut(s)	152, 164, 192, 305
TatI	WGTACW	1 cut(s)	376
TauI	GCSGC	2 cut(s)	113, 456
TfiI	GAWTC	1 cut(s)	604
Tru1I	TTAA	2 cut(s)	272, 350
Tru9I	TTAA	2 cut(s)	272, 350
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	1 cut(s)	229
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	2 cut(s)	77, 560
XapI	RAATTY	2 cut(s)	152, 164
XceI	RCATGY	1 cut(s)	613
XcmI	CCANNNNNNNNNTGG	1 cut(s)	179
XhoI	CTCGAG	1 cut(s)	200
XspI	CTAG	1 cut(s)	432
Zsp2I	ATGCAT	2 cut(s)	286, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.