Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000757

Physical Location & Seq

Genomic Coordinates Reverse (-)

17635194 .. 17636081

Gene Structure 888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G190800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGAAGATCAGAGGAGTTTGGGCCCACAACTTCCATCAAGAATTGTCTCAATTCGATCACTGCCTGCACCGCTTCCCCGTCATCTCTTTCGATACCGAATTTCCAGGCTTTCTTCGAGACACTCCCCGAGACGCACTCGAAGATCAACGTTATGAAGATGTAAAATTCAATGTTGAATCCCTCAAATTGCTCCAGTTGGGATTCACTCTGTCCGACGCCCATGGCAACATTGGGGGAACTTGGGAATTCCACTTGTCTGGGTTCAATGAGAAATCTGACCCTCATGTTGTCGCTTCCATTTCTCTACTCAAAAGGAACGGTCTTGATTTTGCGAGACTTGGGCAATTTGGGATTTCTGTTGCGGAGTTTGTGTTCGGGTTTCTGCGTGTCCTTAGAATCCACAGAGGGTTGCATGATTTGACATGGGTTTGCTTTCATGGCCTTTATGACCTGGCCTATTTGCTCAAGCTCTTGACCCAAAAGCCTCTGCCCGATTCAGTGGTGATGTTTGCTAAGGCTCTTGGTGTAGTTTTTGGCACCATTTATGATGTCAAATTCATGGCTCGCTACTGCCGGGGATTCTTTGGCGGTGAAATTGGATTGGCAAGGGTGGCCAAGCTTCTTGATGTGGAGCGTTCCGGTGAAGCTCACCAAGCGGGTTCGGACAGTTTGTTGACTGCCGCTGTGTTCTCCAAGATGAACGCAACGTTTAGGTCTGTGGCTGGGATGTCTCAAGGCTGCTTATATGGAATTAGCCCAACAATCGTAAGATATTGGCAGCCCGCTCCTGTGATCCTCCGTCGCCCTTGCTTTCCTGTTGCAGCACCTCGTGTCTACGGTGCTGGTCTCATTCATAGTCCTTTTCTTCCCACTTATGTACACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000288 GO:0000291 GO:0000932 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004535 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017148 GO:0019222 GO:0019439 GO:0030014 GO:0030015 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032991 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CAF1

Protein Analysis

296

Amino Acids

33.14

Weight (kDa)

8.78

Isoelectric Point (pI)

35.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06450 AT1G27820 AT1G27890 AT1G61470 AT3G44240
fragaria_vesca	FvH4_6g28110 FvH4_6g28140 FvH4_6g29280 FvH4_6g29280
malus_domestica	MD03G1041900.v1.1 MD09G1229300.v1.1 MD11G1042700.v1.1 MD12G1082100.v1.1 MD14G1080800.v1.1
prunus_persica	Prupe.1G188200_v2.0.a1 Prupe.1G190800_v2.0.a1 Prupe.1G190900_v2.0.a1 Prupe.3G105100_v2.0.a1 Prupe.7G010200_v2.0.a1
pyrus_communis	pycom09g14790 pycom14g07010
rosa_chinensis	RchiOBHm_Chr2g0132091 RchiOBHm_Chr2g0132101 RchiOBHm_Chr2g0134441 RchiOBHm_Chr2g0134461 RchiOBHm_Chr2g0136851 RchiOBHm_Chr2g0167821 RchiOBHm_Chr2g0167861 RchiOBHm_Chr2g0167901 RchiOBHm_Chr2g0167921 RchiOBHm_Chr6g0266841
rosa_laevigata	RLG00000019225 RLG00000019226 RLG00000019393
rosa_multiflora	Rmu_sc0001299.1_g000004 Rmu_sc0005571.1_g000018
rosa_roxburghii	Rroxscaffold_2G00110210 Rroxscaffold_2G00110240 Rroxscaffold_2G00112400 Rroxscaffold_3G00239330 Rroxscaffold_4G00313080
rosa_rugosa	Rorug02G0302000 Rorug02G0302200 Rorug02G0317200 Rorug02G0317200 Rorug03G0220600
rosa_samantha	Rh2AG355100 Rh2AG355200 Rh2AG369800 Rh2AG369900 Rh2AG384800 Rh2CG338700 Rh2CG338800 Rh2CG353700 Rh2CG371400 Rh2DG370100 Rh2DG377900 Rh2DG378000 Rh2DG392800 Rh2DG392900 Rh2DG408200 Rh6BG148800 Rh6BG149300 Rh6CG159200 Rh6DG133000 Rh6DG133400
rosa_wichuraiana	Rw1G013790 Rw2G028830 Rw2G028840 Rw2G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	536
AccBSI	CCGCTC	1 cut(s)	785
AccI	GTMKAC	1 cut(s)	834
AciI	CCGC	6 cut(s)	70, 362, 588, 656, 681, 783
AclI	AACGTT	2 cut(s)	148, 707
AclWI	GGATC	1 cut(s)	787
AcoI	YGGCCR	1 cut(s)	612
AcsI	RAATTY	4 cut(s)	98, 164, 245, 554
AcyI	GRCGYC	1 cut(s)	216
AdeI	CACNNNGTG	1 cut(s)	830
AfaI	GTAC	1 cut(s)	879
AflIII	ACRYGT	1 cut(s)	882
AgsI	TTSAA	3 cut(s)	169, 176, 265
AjnI	CCWGG	2 cut(s)	103, 450
AloI	GAACNNNNNNTCC	2 cut(s)	356, 388
AluBI	AGCT	3 cut(s)	469, 619, 647
AluI	AGCT	3 cut(s)	469, 619, 647
Alw26I	GTCTC	6 cut(s)	51, 111, 123, 328, 735, 851
AlwI	GGATC	1 cut(s)	787
Ama87I	CYCGRG	1 cut(s)	126
AoxI	GGCC	4 cut(s)	21, 439, 453, 612
ApaI	GGGCCC	1 cut(s)	25
ApeKI	GCWGC	3 cut(s)	738, 778, 821
ApoI	RAATTY	4 cut(s)	98, 164, 245, 554
AspS9I	GGNCC	2 cut(s)	21, 22
AsuC2I	CCSGG	1 cut(s)	575
AsuHPI	GGTGA	4 cut(s)	514, 602, 641, 653
AvaI	CYCGRG	1 cut(s)	126
BaeGI	GKGCMC	1 cut(s)	25
BalI	TGGCCA	1 cut(s)	614
BanI	GGYRCC	1 cut(s)	536
BanII	GRGCYC	1 cut(s)	25
BauI	CACGAG	1 cut(s)	828
BbvI	GCAGC	3 cut(s)	725, 790, 833
BccI	CCATC	1 cut(s)	42
BciT130I	CCWGG	2 cut(s)	105, 452
BcnI	CCSGG	1 cut(s)	575
BcoDI	GTCTC	6 cut(s)	51, 111, 123, 328, 735, 851
BisI	GCNGC	4 cut(s)	681, 739, 779, 822
BlsI	GCNGC	4 cut(s)	682, 740, 780, 823
Bme1390I	CCNGG	3 cut(s)	105, 452, 575
BmeT110I	CYCGRG	1 cut(s)	126
BmgT120I	GGNCC	2 cut(s)	21, 22
BmiI	GGNNCC	2 cut(s)	23, 538
BmrFI	CCNGG	3 cut(s)	105, 452, 575
BplI	GAGNNNNNCTC	2 cut(s)	120, 152
BpmI	CTGGAG	1 cut(s)	176
Bpu10I	CCTNAGC	1 cut(s)	513
BpuEI	CTTGAG	2 cut(s)	449, 717
BpuMI	CCSGG	1 cut(s)	575
BsaHI	GRCGYC	1 cut(s)	216
BsaI	GGTCTC	1 cut(s)	851
BsaJI	CCNNGG	2 cut(s)	220, 574
BsaWI	WCCGGW	1 cut(s)	638
BsaXI	ACNNNNNCTCC	2 cut(s)	356, 386
Bse1I	ACTGG	1 cut(s)	193
BseBI	CCWGG	2 cut(s)	105, 452
BseDI	CCNNGG	2 cut(s)	220, 574
BseGI	GGATG	1 cut(s)	732
BseNI	ACTGG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	27
BseSI	GKGCMC	1 cut(s)	25
BseXI	GCAGC	3 cut(s)	725, 790, 833
BseYI	CCCAGC	1 cut(s)	722
BsgI	GTGCAG	1 cut(s)	50
BshFI	GGCC	4 cut(s)	23, 441, 455, 614
BshNI	GGYRCC	1 cut(s)	536
BsiHKCI	CYCGRG	1 cut(s)	126
BsiSI	CCGG	2 cut(s)	574, 639
BsmAI	GTCTC	6 cut(s)	51, 111, 123, 328, 735, 851
BsmBI	CGTCTC	1 cut(s)	123
BsnI	GGCC	4 cut(s)	23, 441, 455, 614
Bso31I	GGTCTC	1 cut(s)	851
BsoBI	CYCGRG	1 cut(s)	126
Bsp120I	GGGCCC	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp1407I	TGTACA	1 cut(s)	877
Bsp143I	GATC	4 cut(s)	6, 55, 142, 792
Bsp19I	CCATGG	1 cut(s)	220
BspACI	CCGC	6 cut(s)	70, 362, 588, 656, 681, 783
BspANI	GGCC	4 cut(s)	23, 441, 455, 614
BspLI	GGNNCC	2 cut(s)	23, 538
BspPI	GGATC	1 cut(s)	787
BspT107I	GGYRCC	1 cut(s)	536
BspTNI	GGTCTC	1 cut(s)	851
BsrBI	CCGCTC	1 cut(s)	785
BsrGI	TGTACA	1 cut(s)	877
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	220, 574
BssMI	GATC	4 cut(s)	6, 55, 142, 792
BssNI	GRCGYC	1 cut(s)	216
BssSI	CACGAG	1 cut(s)	828
BssT1I	CCWWGG	1 cut(s)	220
Bst2BI	CACGAG	1 cut(s)	828
Bst2UI	CCWGG	2 cut(s)	105, 452
Bst4CI	ACNGT	3 cut(s)	320, 668, 839
BstACI	GRCGYC	1 cut(s)	216
BstAUI	TGTACA	1 cut(s)	877
BstC8I	GCNNGC	3 cut(s)	65, 565, 783
BstDEI	CTNAG	2 cut(s)	392, 513
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	732
BstKTI	GATC	4 cut(s)	9, 58, 145, 795
BstMAI	GTCTC	6 cut(s)	51, 111, 123, 328, 735, 851
BstMBI	GATC	4 cut(s)	6, 55, 142, 792
BstMWI	GCNNNNNNNGC	4 cut(s)	69, 438, 611, 653
BstNI	CCWGG	2 cut(s)	105, 452
BstNSI	RCATGY	1 cut(s)	886
BstSCI	CCNGG	3 cut(s)	103, 450, 573
BstSLI	GKGCMC	1 cut(s)	25
BstV1I	GCAGC	3 cut(s)	725, 790, 833
BstXI	CCANNNNNNTGG	1 cut(s)	257
BsuRI	GGCC	4 cut(s)	23, 441, 455, 614
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	732
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	2 cut(s)	58, 504
Cac8I	GCNNGC	3 cut(s)	65, 565, 783
Cfr13I	GGNCC	2 cut(s)	21, 22
CseI	GACGC	2 cut(s)	140, 224
Csp6I	GTAC	1 cut(s)	878
CviAII	CATG	7 cut(s)	221, 284, 413, 423, 437, 559, 883
CviQI	GTAC	1 cut(s)	878
DdeI	CTNAG	2 cut(s)	392, 513
DpnI	GATC	4 cut(s)	8, 57, 144, 794
DpnII	GATC	4 cut(s)	6, 55, 142, 792
DraIII	CACNNNGTG	1 cut(s)	830
EaeI	YGGCCR	1 cut(s)	612
Eco130I	CCWWGG	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	25
Eco31I	GGTCTC	1 cut(s)	851
Eco88I	CYCGRG	1 cut(s)	126
EcoRI	GAATTC	1 cut(s)	245
EcoRII	CCWGG	2 cut(s)	103, 450
EcoT14I	CCWWGG	1 cut(s)	220
EcoT38I	GRGCYC	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	220
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	7 cut(s)	224, 287, 416, 426, 440, 562, 886
FatI	CATG	7 cut(s)	220, 283, 412, 422, 436, 558, 882
FauI	CCCGC	2 cut(s)	649, 790
FblI	GTMKAC	1 cut(s)	834
Fnu4HI	GCNGC	4 cut(s)	681, 739, 779, 822
FokI	GGATG	1 cut(s)	739
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	4 cut(s)	681, 739, 779, 822
GluI	GCNGC	4 cut(s)	681, 739, 779, 822
GsaI	CCCAGC	1 cut(s)	726
GsuI	CTGGAG	1 cut(s)	176
HaeIII	GGCC	4 cut(s)	23, 441, 455, 614
HapII	CCGG	2 cut(s)	574, 639
HgaI	GACGC	2 cut(s)	140, 224
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	7 cut(s)	224, 287, 416, 426, 440, 562, 886
HincII	GTYRAC	1 cut(s)	675
HindII	GTYRAC	1 cut(s)	675
HindIII	AAGCTT	1 cut(s)	617
HinfI	GANTC	5 cut(s)	176, 201, 396, 494, 579
HpaII	CCGG	2 cut(s)	574, 639
HphI	GGTGA	4 cut(s)	514, 602, 641, 653
Hpy166II	GTNNAC	3 cut(s)	675, 835, 880
Hpy188I	TCNGA	4 cut(s)	11, 214, 277, 664
Hpy188III	TCNNGA	5 cut(s)	38, 116, 323, 472, 623
Hpy8I	GTNNAC	3 cut(s)	675, 835, 880
Hpy99I	CGWCG	2 cut(s)	218, 804
HpyCH4III	ACNGT	3 cut(s)	320, 668, 839
HpyCH4IV	ACGT	2 cut(s)	148, 707
HpyCH4V	TGCA	3 cut(s)	67, 412, 821
HpyF10VI	GCNNNNNNNGC	4 cut(s)	69, 438, 611, 653
HpyF3I	CTNAG	2 cut(s)	392, 513
HpySE526I	ACGT	2 cut(s)	148, 707
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	7 cut(s)	224, 287, 416, 426, 440, 562, 886
Kzo9I	GATC	4 cut(s)	6, 55, 142, 792
LmnI	GCTCC	3 cut(s)	195, 631, 790
Lsp1109I	GCAGC	3 cut(s)	725, 790, 833
MaeII	ACGT	2 cut(s)	148, 707
MalI	GATC	4 cut(s)	8, 57, 144, 794
MbiI	CCGCTC	1 cut(s)	785
MboI	GATC	4 cut(s)	6, 55, 142, 792
MboII	GAAGA	5 cut(s)	16, 104, 152, 167, 857
MhlI	GDGCHC	1 cut(s)	25
MlsI	TGGCCA	1 cut(s)	614
MluNI	TGGCCA	1 cut(s)	614
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	7 cut(s)	5, 191, 291, 398, 495, 806, 837
Mox20I	TGGCCA	1 cut(s)	614
MscI	TGGCCA	1 cut(s)	614
Msp20I	TGGCCA	1 cut(s)	614
MspA1I	CMGCKG	1 cut(s)	683
MspI	CCGG	2 cut(s)	574, 639
MspR9I	CCNGG	3 cut(s)	105, 452, 575
MvaI	CCWGG	2 cut(s)	105, 452
MwoI	GCNNNNNNNGC	4 cut(s)	69, 438, 611, 653
NciI	CCSGG	1 cut(s)	575
NcoI	CCATGG	1 cut(s)	220
NdeII	GATC	4 cut(s)	6, 55, 142, 792
NlaIII	CATG	7 cut(s)	224, 287, 416, 426, 440, 562, 886
NlaIV	GGNNCC	2 cut(s)	23, 538
NspI	RCATGY	1 cut(s)	886
PciI	ACATGT	1 cut(s)	882
PfeI	GAWTC	5 cut(s)	176, 201, 396, 494, 579
PkrI	GCNGC	4 cut(s)	682, 740, 780, 823
PscI	ACATGT	1 cut(s)	882
Psp1406I	AACGTT	2 cut(s)	148, 707
Psp6I	CCWGG	2 cut(s)	103, 450
PspFI	CCCAGC	1 cut(s)	722
PspGI	CCWGG	2 cut(s)	103, 450
PspN4I	GGNNCC	2 cut(s)	23, 538
PspOMI	GGGCCC	1 cut(s)	21
PspPI	GGNCC	2 cut(s)	21, 22
RsaI	GTAC	1 cut(s)	879
RsaNI	GTAC	1 cut(s)	878
SatI	GCNGC	4 cut(s)	681, 739, 779, 822
Sau3AI	GATC	4 cut(s)	6, 55, 142, 792
Sau96I	GGNCC	2 cut(s)	21, 22
ScrFI	CCNGG	3 cut(s)	105, 452, 575
SduI	GDGCHC	1 cut(s)	25
SetI	ASST	8 cut(s)	151, 453, 471, 621, 649, 710, 716, 829
SmlI	CTYRAG	2 cut(s)	464, 732
SmoI	CTYRAG	2 cut(s)	464, 732
SsiI	CCGC	6 cut(s)	70, 362, 588, 656, 681, 783
StyD4I	CCNGG	3 cut(s)	103, 450, 573
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	3 cut(s)	320, 668, 839
TaiI	ACGT	2 cut(s)	151, 710
TaqI	TCGA	4 cut(s)	54, 90, 115, 138
TatI	WGTACW	1 cut(s)	877
TauI	GCSGC	1 cut(s)	683
TfiI	GAWTC	5 cut(s)	176, 201, 396, 494, 579
TscAI	CASTG	2 cut(s)	65, 504
TseI	GCWGC	3 cut(s)	738, 778, 821
TspDTI	ATGAA	6 cut(s)	17, 168, 425, 547, 713, 842
TspGWI	ACGGA	1 cut(s)	788
TspRI	CASTG	2 cut(s)	65, 504
XapI	RAATTY	4 cut(s)	98, 164, 245, 554
XceI	RCATGY	1 cut(s)	886
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.