Rorug03G0220600

CCR4-associated factor 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000757
Physical Location & Seq
Reverse (-)
20131472 .. 20134468
2997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0220600.1

Sequence Viewer

Length: 2064 bp
ATGCAAGCCGTATCTAGAGAGTGTTATGATGAAGACGGTTCGTTCATGGACGATATGTCCACCAACAGCACGCTCGAGCTGCCTCCCTCTTACACTATATCTTACAAGAACAACTTCTTCACAGTGGGGTGTAACAGTGTAGCAGTGTATCAAGGTTACCAAAGCAAAGTCCCAGATCCAGAAGAAAGCTACAAAGGCGGGTACACCGTGAGCCTGTGTCAAGATGCTCTTGGCACAGCACTTCCCACCGATTCTTGCAATGGTTTCGGGTGTGGCCAAAATGCAATCCCTAGTGGACTGCAAAACATGTCGGTGGAATTGTATCAACTTGACGGCTACTTCAGAAGCTGGAACCACTGGAACATAGAGCCAGACTACCTGTGCAGCTATGGCTTCATTGTGCAAGATGGCAACTTCACATTCTCTGGGAACACAAGTTTTGAAGAACTGAACAGCACAAGGATGCAGCTTCCGGTGGTTGTTAATTGGGCAATTGGGGATGAGACATGTGATGTAGCAAAGAAGAACACAGAGACTTATTCATGCAAGGAACATAGCGACTGTGTCGATCGTACCATCAATGGTACTTCATCTGGAGGTTACACTTGCCGGTGCACGACAGGCTACGACGGGAACCCATACCTCTCAGATGGTTGCCAAGATATTGATGAGTGCCTGCTAGCTCCGAACCCATGCAACAAAGGAAAGTGCATAAATTTACCCGGAACTCACACTTGTACATGTGATAGTGGGTACAGATTAAGTGAAAACACGACCACTTGCGTGGAAGGAGGCAAAGGAAAGAGCACTGTCTTAAAAGTTTCATTAGGTATAAGTATAAGCATGTTTGTCTTACTGGTTGGAATTTTTTGGTTATATTGTGGAATGAAGAGACGGAAGTTCAAACAACTGAAAGAAATGTACTTCAAAGAAAATGGTGGCGAGAAGTTACGAGAAAAATTGGCTAGTCACAAGGGATCTGTCGAGACAGCAGCCAGGATCTTTACCTCGGCAGACCTCAAGCAGGCCACAAACAATTACCACAGAGATAATATCCTTGGTGAAGGAGCTTATGGAACAGTTTACAAAGGAGTACTTGCGGATAATAAAGTGGTAGCCATAAAGAAGTCCAAAATCATGGCCAAGTCCCAGGCTGATCAGTTTGTTAATGAGGTGGTTGTTCTCTCTCAAATAAACCATAAAAATGTGGTGAAGCTTTTAGGTTGCTGTTTAGAGACAGAAATGCCTTTACTAGTTTATGAGTACGTTAGCAATGGCACTCTTTATGACCACGTTCATAAAAGAAATGAAAAAGGTCCACTTTCATTAGGATTGCGATTGAAGATTGCAGCAGAAACAGCAGAATCACTTGCGTACTTGCACTACTCTACATCAATGCAAATCGTGCACCGAGATGTGAAAGCAACTAATATACTACTGGACGAGAAATTCACGGCCAAAGTATCGGACTTTGGAGCTTCAAAATTGGTTCCTGAAGATCAAGATCAACTGTCAACTTTAGTGCAAGGAACAATGGGATACTTGGACCCTGAATATCTTCAATCAAACACACTCACAGAAAAGAGTGACGTCTATAGTTTTGGTGTTGTACTTGTGGAGCTACTAACAAGCAGAAGGGCACTTTCTTTAGACAAGCCAGAAGCGGAGCGAAGCCTAGCAAACGTCTTTGTTTGTGCAGTGGAAGATGGTCTATTGAAGCACATACTTGATGAGGAAGTAGTTAAGGACGGACATTTTGAGACTGTTGAAAAAGTTGCCGATCTGGCCAAAAGATGTCTAAGCATGAAAGGGAGAGAAAGGCCAACTATGAGGGAAGTAGCAAGGGAGCTAGAAGGACTGCAAATTTTGCCAAAGCATTCAGGGGGTGGAAAGCCTAATTCTTCTCCTAAAGAAACTGACTACTTGCTCGCATCACCTTCAAACGCTTATGTTGTCGATGTTAAGGGTGAAGGCGATGTTGGTTCCATTACAACCAGTATTGAGTACGACCAGAGCATGCAAAATCAAGCCCAAGTGTTAAGGCCTGATGATGCTGGAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CAF1 RVT_3

Protein Analysis

687

Amino Acids

75.81

Weight (kDa)

5.29

Isoelectric Point (pI)

35.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EGF_CA PF07645 221 - 261 1e-08 Calcium-binding EGF domain
Pkinase PF00069 347 - 614 1.7e-50 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 350 - 617 6e-50 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1593
AciI CCGC 3 cut(s) 198, 1100, 1664
AclWI GGATC 3 cut(s) 170, 985, 1007
AcoI YGGCCR 4 cut(s) 274, 1140, 1455, 1785
AcsI RAATTY 4 cut(s) 715, 864, 1448, 1863
AcuI CTGAAG 2 cut(s) 325, 1515
AcyI GRCGYC 1 cut(s) 1590
AfiI CCNNNNNNNGG 1 cut(s) 1024
AflIII ACRYGT 3 cut(s) 306, 506, 740
AgsI TTSAA 9 cut(s) 443, 904, 928, 1342, 1482, 1562, 1717, 1769, 1941
AhdI GACNNNNNGTC 1 cut(s) 55
AhlI ACTAGT 1 cut(s) 1252
AjnI CCWGG 2 cut(s) 995, 1149
AjuI GAANNNNNNNTTGG 2 cut(s) 1962, 1994
AleI CACNNNNGTG 1 cut(s) 782
Alw21I GWGCWC 3 cut(s) 617, 809, 1410
Alw26I GTCTC 6 cut(s) 497, 527, 886, 980, 1229, 1754
Alw44I GTGCAC 2 cut(s) 613, 1406
AlwI GGATC 3 cut(s) 170, 985, 1007
AlwNI CAGNNNCTG 1 cut(s) 348
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 7 cut(s) 274, 1026, 1140, 1455, 1785, 1820, 2042
ApaLI GTGCAC 2 cut(s) 613, 1406
ApeKI GCWGC 5 cut(s) 79, 384, 466, 992, 1349
ApoI RAATTY 4 cut(s) 715, 864, 1448, 1863
ArsI GACNNNNNNTTYG 2 cut(s) 1739, 1771
Asp700I GAANNNNTTC 2 cut(s) 113, 1557
AspS9I GGNCC 2 cut(s) 1316, 1546
AsuC2I CCSGG 1 cut(s) 723
AsuHPI GGTGA 4 cut(s) 1073, 1222, 1926, 1979
AsuNHI GCTAGC 1 cut(s) 679
AvaI CYCGRG 1 cut(s) 74
AvaII GGWCC 2 cut(s) 1316, 1546
BaeGI GKGCMC 3 cut(s) 617, 1410, 1642
BalI TGGCCA 3 cut(s) 276, 1142, 1787
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 3 cut(s) 617, 809, 1410
BbvI GCAGC 5 cut(s) 66, 396, 478, 1004, 1361
BccI CCATC 4 cut(s) 401, 584, 644, 1700
BceAI ACGGC 2 cut(s) 349, 1470
BcgI CGANNNNNNTGC 2 cut(s) 247, 281
BciT130I CCWGG 2 cut(s) 997, 1151
BciVI GTATCC 1 cut(s) 1532
BclI TGATCA 1 cut(s) 1156
BcnI CCSGG 1 cut(s) 723
BcoDI GTCTC 6 cut(s) 497, 527, 886, 980, 1229, 1754
BcuI ACTAGT 1 cut(s) 1252
BfaI CTAG 7 cut(s) 15, 291, 680, 966, 1253, 1676, 1850
BfmI CTRYAG 1 cut(s) 1594
BfuI GTATCC 1 cut(s) 1532
BglI GCCNNNNNGGC 1 cut(s) 1784
BisI GCNGC 5 cut(s) 80, 385, 467, 993, 1350
BlsI GCNGC 5 cut(s) 81, 386, 468, 994, 1351
BmcAI AGTACT 1 cut(s) 1095
Bme1390I CCNGG 3 cut(s) 723, 997, 1151
Bme18I GGWCC 2 cut(s) 1316, 1546
BmeRI GACNNNNNGTC 1 cut(s) 55
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 2 cut(s) 1316, 1546
BmiI GGNNCC 5 cut(s) 353, 635, 1491, 1548, 1984
BmrFI CCNGG 3 cut(s) 723, 997, 1151
BmsI GCATC 4 cut(s) 214, 453, 1940, 2041
BmtI GCTAGC 1 cut(s) 683
BpiI GAAGAC 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 615
BpuEI CTTGAG 1 cut(s) 1004
BpuMI CCSGG 1 cut(s) 723
BsaBI GATNNNNATC 1 cut(s) 1503
BsaHI GRCGYC 1 cut(s) 1590
BsaJI CCNNGG 3 cut(s) 1008, 1057, 1149
BsaWI WCCGGW 1 cut(s) 472
Bsc4I CCNNNNNNNGG 1 cut(s) 1024
Bse118I RCCGGY 1 cut(s) 609
Bse1I ACTGG 4 cut(s) 362, 861, 1443, 1995
Bse3DI GCAATG 2 cut(s) 265, 1279
Bse8I GATNNNNATC 1 cut(s) 1503
BseBI CCWGG 2 cut(s) 997, 1151
BseDI CCNNGG 3 cut(s) 1008, 1057, 1149
BseGI GGATG 2 cut(s) 468, 505
BseJI GATNNNNATC 1 cut(s) 1503
BseLI CCNNNNNNNGG 1 cut(s) 1024
BseMI GCAATG 2 cut(s) 265, 1279
BseMII CTCAG 1 cut(s) 660
BseNI ACTGG 4 cut(s) 362, 861, 1443, 1995
BseSI GKGCMC 3 cut(s) 617, 1410, 1642
BseXI GCAGC 5 cut(s) 66, 396, 478, 1004, 1361
BsgI GTGCAG 2 cut(s) 403, 1716
Bsh1285I CGRYCG 1 cut(s) 571
BshFI GGCC 7 cut(s) 276, 1028, 1142, 1457, 1787, 1822, 2044
BsiEI CGRYCG 1 cut(s) 571
BsiHKAI GWGCWC 3 cut(s) 617, 809, 1410
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 3 cut(s) 473, 610, 723
BslFI GGGAC 2 cut(s) 155, 1132
BslI CCNNNNNNNGG 1 cut(s) 1024
BsmAI GTCTC 6 cut(s) 497, 527, 886, 980, 1229, 1754
BsmBI CGTCTC 1 cut(s) 886
BsmFI GGGAC 2 cut(s) 155, 1132
BsmI GAATGC 1 cut(s) 1876
BsnI GGCC 7 cut(s) 276, 1028, 1142, 1457, 1787, 1822, 2044
BsoBI CYCGRG 1 cut(s) 74
Bsp1286I GDGCHC 4 cut(s) 617, 809, 1410, 1642
Bsp1407I TGTACA 1 cut(s) 737
Bsp143I GATC 8 cut(s) 175, 568, 977, 999, 1156, 1498, 1504, 1780
BspACI CCGC 3 cut(s) 198, 1100, 1664
BspANI GGCC 7 cut(s) 276, 1028, 1142, 1457, 1787, 1822, 2044
BspCNI CTCAG 1 cut(s) 659
BspLI GGNNCC 5 cut(s) 353, 635, 1491, 1548, 1984
BspOI GCTAGC 1 cut(s) 683
BspPI GGATC 3 cut(s) 170, 985, 1007
BsrDI GCAATG 2 cut(s) 265, 1279
BsrFI RCCGGY 1 cut(s) 609
BsrGI TGTACA 1 cut(s) 737
BsrI ACTGG 4 cut(s) 362, 861, 1443, 1995
BssAI RCCGGY 1 cut(s) 609
BssECI CCNNGG 3 cut(s) 1008, 1057, 1149
BssMI GATC 8 cut(s) 175, 568, 977, 999, 1156, 1498, 1504, 1780
BssNI GRCGYC 1 cut(s) 1590
BssT1I CCWWGG 1 cut(s) 1057
Bst2UI CCWGG 2 cut(s) 997, 1151
Bst4CI ACNGT 9 cut(s) 38, 124, 137, 208, 563, 811, 1081, 1512, 1765
Bst6I CTCTTC 1 cut(s) 884
BstACI GRCGYC 1 cut(s) 1590
BstAPI GCANNNNNTGC 2 cut(s) 1405, 1867
BstAUI TGTACA 1 cut(s) 737
BstC8I GCNNGC 7 cut(s) 6, 71, 677, 681, 1026, 1929, 2018
BstDEI CTNAG 2 cut(s) 646, 1799
BstEII GGTNACC 1 cut(s) 155
BstENI CCTNNNNNAGG 1 cut(s) 1022
BstF5I GGATG 2 cut(s) 468, 505
BstKTI GATC 8 cut(s) 178, 571, 980, 1002, 1159, 1501, 1507, 1783
BstMAI GTCTC 6 cut(s) 497, 527, 886, 980, 1229, 1754
BstMBI GATC 8 cut(s) 175, 568, 977, 999, 1156, 1498, 1504, 1780
BstMCI CGRYCG 1 cut(s) 571
BstMWI GCNNNNNNNGC 8 cut(s) 79, 195, 390, 621, 1358, 1405, 1784, 1867
BstNI CCWGG 2 cut(s) 997, 1151
BstNSI RCATGY 5 cut(s) 310, 510, 744, 847, 2020
BstPI GGTNACC 1 cut(s) 155
BstSCI CCNGG 3 cut(s) 721, 995, 1149
BstSFI CTRYAG 1 cut(s) 1594
BstSLI GKGCMC 3 cut(s) 617, 1410, 1642
BstV1I GCAGC 5 cut(s) 66, 396, 478, 1004, 1361
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 3 cut(s) 175, 977, 999
BstXI CCANNNNNNTGG 2 cut(s) 784, 1138
BstYI RGATCY 3 cut(s) 175, 977, 999
BsuI GTATCC 1 cut(s) 1532
BsuRI GGCC 7 cut(s) 276, 1028, 1142, 1457, 1787, 1822, 2044
BtgZI GCGATG 1 cut(s) 1989
BtsCI GGATG 2 cut(s) 468, 505
BtsI GCAGTG 2 cut(s) 150, 1704
BtsIMutI CAGTG 6 cut(s) 129, 142, 150, 355, 807, 1704
Cac8I GCNNGC 7 cut(s) 6, 71, 677, 681, 1026, 1929, 2018
CaiI CAGNNNCTG 1 cut(s) 348
Cfr10I RCCGGY 1 cut(s) 609
Cfr13I GGNCC 2 cut(s) 1316, 1546
DdeI CTNAG 2 cut(s) 646, 1799
DpnI GATC 8 cut(s) 177, 570, 979, 1001, 1158, 1500, 1506, 1782
DpnII GATC 8 cut(s) 175, 568, 977, 999, 1156, 1498, 1504, 1780
DriI GACNNNNNGTC 1 cut(s) 55
EaeI YGGCCR 4 cut(s) 274, 1140, 1455, 1785
Eam1104I CTCTTC 1 cut(s) 884
Eam1105I GACNNNNNGTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 884
Eco130I CCWWGG 1 cut(s) 1057
Eco147I AGGCCT 1 cut(s) 2044
Eco47I GGWCC 2 cut(s) 1316, 1546
Eco57I CTGAAG 2 cut(s) 325, 1515
Eco88I CYCGRG 1 cut(s) 74
Eco91I GGTNACC 1 cut(s) 155
EcoNI CCTNNNNNAGG 1 cut(s) 1022
EcoO65I GGTNACC 1 cut(s) 155
EcoRII CCWGG 2 cut(s) 995, 1149
EcoT14I CCWWGG 1 cut(s) 1057
ErhI CCWWGG 1 cut(s) 1057
Esp3I CGTCTC 1 cut(s) 886
FalI AAGNNNNNCTT 8 cut(s) 98, 130, 213, 245, 1080, 1112, 1305, 1337
FaqI GGGAC 2 cut(s) 155, 1132
FauI CCCGC 1 cut(s) 191
FbaI TGATCA 1 cut(s) 1156
Fnu4HI GCNGC 5 cut(s) 80, 385, 467, 993, 1350
FokI GGATG 2 cut(s) 475, 512
Fsp4HI GCNGC 5 cut(s) 80, 385, 467, 993, 1350
FspBI CTAG 7 cut(s) 15, 291, 680, 966, 1253, 1676, 1850
GluI GCNGC 5 cut(s) 80, 385, 467, 993, 1350
GsuI CTGGAG 1 cut(s) 615
HaeIII GGCC 7 cut(s) 276, 1028, 1142, 1457, 1787, 1822, 2044
HapII CCGG 3 cut(s) 473, 610, 723
Hin1I GRCGYC 1 cut(s) 1590
HincII GTYRAC 1 cut(s) 1515
HindII GTYRAC 1 cut(s) 1515
HindIII AAGCTT 1 cut(s) 1214
HinfI GANTC 2 cut(s) 251, 1364
HpaII CCGG 3 cut(s) 473, 610, 723
HphI GGTGA 4 cut(s) 1073, 1222, 1926, 1979
Hpy166II GTNNAC 8 cut(s) 60, 204, 296, 615, 1084, 1319, 1408, 1515
Hpy188I TCNGA 4 cut(s) 344, 649, 687, 1468
Hpy188III TCNNGA 7 cut(s) 15, 179, 221, 594, 985, 1493, 1502
Hpy8I GTNNAC 8 cut(s) 60, 204, 296, 615, 1084, 1319, 1408, 1515
Hpy99I CGWCG 1 cut(s) 632
HpyAV CCTTC 6 cut(s) 782, 1058, 1629, 1847, 1947, 1964
HpyCH4III ACNGT 9 cut(s) 38, 124, 137, 208, 563, 811, 1081, 1512, 1765
HpyCH4IV ACGT 4 cut(s) 1266, 1293, 1590, 1683
HpyF10VI GCNNNNNNNGC 8 cut(s) 79, 195, 390, 621, 1358, 1405, 1784, 1867
HpyF3I CTNAG 2 cut(s) 646, 1799
HpySE526I ACGT 4 cut(s) 1266, 1293, 1590, 1683
Hsp92I GRCGYC 1 cut(s) 1590
Ksp22I TGATCA 1 cut(s) 1156
Kzo9I GATC 8 cut(s) 175, 568, 977, 999, 1156, 1498, 1504, 1780
LmnI GCTCC 6 cut(s) 688, 1067, 1475, 1618, 1666, 1846
Lsp1109I GCAGC 5 cut(s) 66, 396, 478, 1004, 1361
LweI GCATC 4 cut(s) 214, 453, 1940, 2041
MaeI CTAG 7 cut(s) 15, 291, 680, 966, 1253, 1676, 1850
MaeII ACGT 4 cut(s) 1266, 1293, 1590, 1683
MaeIII GTNAC 6 cut(s) 131, 155, 599, 948, 968, 1586
MalI GATC 8 cut(s) 177, 570, 979, 1001, 1158, 1500, 1506, 1782
MboI GATC 8 cut(s) 175, 568, 977, 999, 1156, 1498, 1504, 1780
MfeI CAATTG 1 cut(s) 492
MflI RGATCY 3 cut(s) 175, 977, 999
MhlI GDGCHC 4 cut(s) 617, 809, 1410, 1642
MlsI TGGCCA 3 cut(s) 276, 1142, 1787
MluNI TGGCCA 3 cut(s) 276, 1142, 1787
MmeI TCCRAC 1 cut(s) 841
Mox20I TGGCCA 3 cut(s) 276, 1142, 1787
MroXI GAANNNNTTC 2 cut(s) 113, 1557
MscI TGGCCA 3 cut(s) 276, 1142, 1787
MseI TTAA 7 cut(s) 483, 761, 815, 1167, 1743, 1962, 2039
MslI CAYNNNNRTG 5 cut(s) 311, 461, 782, 1203, 1413
Msp20I TGGCCA 3 cut(s) 276, 1142, 1787
MspI CCGG 3 cut(s) 473, 610, 723
MspR9I CCNGG 3 cut(s) 723, 997, 1151
MunI CAATTG 1 cut(s) 492
Mva1269I GAATGC 1 cut(s) 1876
MvaI CCWGG 2 cut(s) 997, 1151
MwoI GCNNNNNNNGC 8 cut(s) 79, 195, 390, 621, 1358, 1405, 1784, 1867
NciI CCSGG 1 cut(s) 723
NdeII GATC 8 cut(s) 175, 568, 977, 999, 1156, 1498, 1504, 1780
NheI GCTAGC 1 cut(s) 679
NlaIV GGNNCC 5 cut(s) 353, 635, 1491, 1548, 1984
NmeAIII GCCGAG 1 cut(s) 989
NmuCI GTSAC 2 cut(s) 968, 1586
NspI RCATGY 5 cut(s) 310, 510, 744, 847, 2020
OliI CACNNNNGTG 1 cut(s) 782
PaeI GCATGC 1 cut(s) 2020
PaeR7I CTCGAG 1 cut(s) 74
PceI AGGCCT 1 cut(s) 2044
PciI ACATGT 3 cut(s) 306, 506, 740
PctI GAATGC 1 cut(s) 1876
PdmI GAANNNNTTC 2 cut(s) 113, 1557
PfeI GAWTC 2 cut(s) 251, 1364
PflFI GACNNNGTC 1 cut(s) 563
PkrI GCNGC 5 cut(s) 81, 386, 468, 994, 1351
Ple19I CGATCG 1 cut(s) 571
PscI ACATGT 3 cut(s) 306, 506, 740
Psp6I CCWGG 2 cut(s) 995, 1149
PspEI GGTNACC 1 cut(s) 155
PspGI CCWGG 2 cut(s) 995, 1149
PspN4I GGNNCC 5 cut(s) 353, 635, 1491, 1548, 1984
PspPI GGNCC 2 cut(s) 1316, 1546
PspXI VCTCGAGB 1 cut(s) 74
PstNI CAGNNNCTG 1 cut(s) 348
PsuI RGATCY 3 cut(s) 175, 977, 999
PsyI GACNNNGTC 1 cut(s) 563
PvuI CGATCG 1 cut(s) 571
RseI CAYNNNNRTG 5 cut(s) 311, 461, 782, 1203, 1413
SaqAI TTAA 7 cut(s) 483, 761, 815, 1167, 1743, 1962, 2039
SatI GCNGC 5 cut(s) 80, 385, 467, 993, 1350
Sau3AI GATC 8 cut(s) 175, 568, 977, 999, 1156, 1498, 1504, 1780
Sau96I GGNCC 2 cut(s) 1316, 1546
ScaI AGTACT 1 cut(s) 1095
ScrFI CCNGG 3 cut(s) 723, 997, 1151
SduI GDGCHC 4 cut(s) 617, 809, 1410, 1642
SfaNI GCATC 4 cut(s) 214, 453, 1940, 2041
SfcI CTRYAG 1 cut(s) 1594
Sfr274I CTCGAG 1 cut(s) 74
SinI GGWCC 2 cut(s) 1316, 1546
SlaI CTCGAG 1 cut(s) 74
SmiMI CAYNNNNRTG 5 cut(s) 311, 461, 782, 1203, 1413
SmlI CTYRAG 2 cut(s) 74, 1019
SmoI CTYRAG 2 cut(s) 74, 1019
SpeI ACTAGT 1 cut(s) 1252
SphI GCATGC 1 cut(s) 2020
SseBI AGGCCT 1 cut(s) 2044
SsiI CCGC 3 cut(s) 198, 1100, 1664
SspMI CTAG 7 cut(s) 15, 291, 680, 966, 1253, 1676, 1850
StuI AGGCCT 1 cut(s) 2044
StyD4I CCNGG 3 cut(s) 721, 995, 1149
StyI CCWWGG 1 cut(s) 1057
TaaI ACNGT 9 cut(s) 38, 124, 137, 208, 563, 811, 1081, 1512, 1765
TaiI ACGT 4 cut(s) 1269, 1296, 1593, 1686
TaqI TCGA 4 cut(s) 75, 567, 984, 1956
TatI WGTACW 4 cut(s) 737, 921, 1093, 1609
TfiI GAWTC 2 cut(s) 251, 1364
Tru1I TTAA 7 cut(s) 483, 761, 815, 1167, 1743, 1962, 2039
Tru9I TTAA 7 cut(s) 483, 761, 815, 1167, 1743, 1962, 2039
TscAI CASTG 6 cut(s) 129, 142, 150, 362, 814, 1704
TseFI GTSAC 2 cut(s) 968, 1586
TseI GCWGC 5 cut(s) 79, 384, 466, 992, 1349
Tsp45I GTSAC 2 cut(s) 968, 1586
TspGWI ACGGA 2 cut(s) 910, 1764
TspRI CASTG 6 cut(s) 129, 142, 150, 362, 814, 1704
Tth111I GACNNNGTC 1 cut(s) 563
VneI GTGCAC 2 cut(s) 613, 1406
VpaK11BI GGWCC 2 cut(s) 1316, 1546
XagI CCTNNNNNAGG 1 cut(s) 1022
XapI RAATTY 4 cut(s) 715, 864, 1448, 1863
XbaI TCTAGA 1 cut(s) 14
XceI RCATGY 5 cut(s) 310, 510, 744, 847, 2020
XhoI CTCGAG 1 cut(s) 74
XmnI GAANNNNTTC 2 cut(s) 113, 1557
XspI CTAG 7 cut(s) 15, 291, 680, 966, 1253, 1676, 1850
ZraI GACGTC 1 cut(s) 1591
ZrmI AGTACT 1 cut(s) 1095
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.