Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000757

Physical Location & Seq

Genomic Coordinates Forward (+)

21626455 .. 21627687

Gene Structure 1233 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g28110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGCAAGCAGCTATCGAAGATATGCAATATCTGCAGTTTCCATTACCGCCTGTGCCGTTCATGAATCCTTATTTGGGTACAATGCAGTACTGCTACTACCCAGTTATTCCCTTCCCCATGCATGATCCTGACCCTGTTCCTGCACCTGATGTTATTTATCAGGTTTGGAAGAGCAATTTAACGCACGAGTTCAAACGAATTTGGAATCTAATTAGCCAAGGTGGCCGCTTGTTCGCTTCTATAGACACAGAATACCCTGGCACACTTTATAAATCCGACAAAGGTCGTCTCGATGACCCTGATTACATGTATGACATGATGAGGAAGAATGTGAATGAGACCAACATAATCCAGTTAGGTCTCACACTCGCAGACCTTCACGGAAACAGATACACCTGGGAGTTCAATTTCAGCGACTTTGATATTGTCCGTGATCGTCAAGACAAGGACTCAGTCGACTTTCTTATGCGTCAAGGAATCGATTTCCGCAAACACAAGAAGGATGGCATTCCTTCGCATAAATTTGCAAGAAAGTGTTTGGAAGCTGGGCTGTTGGGAAACAAATTAGTAGTATGGGTGGGTTTCCAGATCTTATATGATTTGGGATACTTCACCAAGATCCTCACAGGGCAAAACTTGCCAGACAAGTTTGATACGTACATGGAGTTTGAAAGGGACTACTTTGGGGATAGGGTGTATGATGTCAAGGACATGATCAGGGAGTACAACAAGAGTGACAGCAGCAGGGACTCAAATCCGAAATTACATGGAGGTTTGGACAAAGTGGCGGAGACGCTGGGGATTCCTCGTGTGGCTGGGAAGAGTCACCAGGCCGGCTCTGATAGTCTCTTGACATATCTAACCTTTCTCAAGCTCAACCACATATGTATGTATAACAGTATAACAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CAF1

Protein Analysis

304

Amino Acids

35.23

Weight (kDa)

5.91

Isoelectric Point (pI)

34.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAF1	PF04857	55 - 171	9.8e-13	CAF1 family ribonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06450 AT1G27820 AT1G27890 AT1G61470 AT3G44240
fragaria_vesca	FvH4_6g28110 FvH4_6g28140 FvH4_6g29280 FvH4_6g29280
malus_domestica	MD03G1041900.v1.1 MD09G1229300.v1.1 MD11G1042700.v1.1 MD12G1082100.v1.1 MD14G1080800.v1.1
prunus_persica	Prupe.1G188200_v2.0.a1 Prupe.1G190800_v2.0.a1 Prupe.1G190900_v2.0.a1 Prupe.3G105100_v2.0.a1 Prupe.7G010200_v2.0.a1
pyrus_communis	pycom09g14790 pycom14g07010
rosa_chinensis	RchiOBHm_Chr2g0132091 RchiOBHm_Chr2g0132101 RchiOBHm_Chr2g0134441 RchiOBHm_Chr2g0134461 RchiOBHm_Chr2g0136851 RchiOBHm_Chr2g0167821 RchiOBHm_Chr2g0167861 RchiOBHm_Chr2g0167901 RchiOBHm_Chr2g0167921 RchiOBHm_Chr6g0266841
rosa_laevigata	RLG00000019225 RLG00000019226 RLG00000019393
rosa_multiflora	Rmu_sc0001299.1_g000004 Rmu_sc0005571.1_g000018
rosa_roxburghii	Rroxscaffold_2G00110210 Rroxscaffold_2G00110240 Rroxscaffold_2G00112400 Rroxscaffold_3G00239330 Rroxscaffold_4G00313080
rosa_rugosa	Rorug02G0302000 Rorug02G0302200 Rorug02G0317200 Rorug02G0317200 Rorug03G0220600
rosa_samantha	Rh2AG355100 Rh2AG355200 Rh2AG369800 Rh2AG369900 Rh2AG384800 Rh2CG338700 Rh2CG338800 Rh2CG353700 Rh2CG371400 Rh2DG370100 Rh2DG377900 Rh2DG378000 Rh2DG392800 Rh2DG392900 Rh2DG408200 Rh6BG148800 Rh6BG149300 Rh6CG159200 Rh6DG133000 Rh6DG133400
rosa_wichuraiana	Rw1G013790 Rw2G028830 Rw2G028840 Rw2G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	270
AccI	GTMKAC	1 cut(s)	456
AciI	CCGC	4 cut(s)	47, 226, 487, 788
AclWI	GGATC	2 cut(s)	119, 613
AcoI	YGGCCR	1 cut(s)	223
AcsI	RAATTY	2 cut(s)	198, 521
AfaI	GTAC	4 cut(s)	79, 89, 659, 725
AfiI	CCNNNNNNNGG	1 cut(s)	74
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	3 cut(s)	193, 406, 671
AjnI	CCWGG	3 cut(s)	256, 395, 828
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	3 cut(s)	11, 545, 874
AluI	AGCT	3 cut(s)	11, 545, 874
Alw26I	GTCTC	5 cut(s)	293, 332, 365, 785, 851
AlwI	GGATC	2 cut(s)	119, 613
AoxI	GGCC	2 cut(s)	223, 831
ApeKI	GCWGC	2 cut(s)	8, 741
ApoI	RAATTY	2 cut(s)	198, 521
AsuHPI	GGTGA	2 cut(s)	604, 818
BauI	CACGAG	2 cut(s)	185, 807
BbvI	GCAGC	2 cut(s)	20, 753
BccI	CCATC	1 cut(s)	497
BceAI	ACGGC	1 cut(s)	40
BciT130I	CCWGG	3 cut(s)	258, 397, 830
BciVI	GTATCC	1 cut(s)	599
BclI	TGATCA	1 cut(s)	714
BcoDI	GTCTC	5 cut(s)	293, 332, 365, 785, 851
BfmI	CTRYAG	2 cut(s)	32, 240
BfuI	GTATCC	1 cut(s)	599
BglI	GCCNNNNNGGC	1 cut(s)	222
BglII	AGATCT	1 cut(s)	588
BisI	GCNGC	3 cut(s)	9, 226, 742
BlsI	GCNGC	3 cut(s)	10, 227, 743
BmcAI	AGTACT	1 cut(s)	89
Bme1390I	CCNGG	3 cut(s)	258, 397, 830
BmrFI	CCNGG	3 cut(s)	258, 397, 830
BmrI	ACTGGG	1 cut(s)	95
BmuI	ACTGGG	1 cut(s)	95
BoxI	GACNNNNGTC	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	854
Bsa29I	ATCGAT	1 cut(s)	480
BsaAI	YACGTR	1 cut(s)	657
BsaI	GGTCTC	2 cut(s)	332, 365
BsaJI	CCNNGG	3 cut(s)	217, 256, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse118I	RCCGGY	1 cut(s)	833
Bse1I	ACTGG	2 cut(s)	101, 352
BseBI	CCWGG	3 cut(s)	258, 397, 830
BseCI	ATCGAT	1 cut(s)	480
BseDI	CCNNGG	3 cut(s)	217, 256, 396
BseGI	GGATG	1 cut(s)	508
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	2 cut(s)	101, 352
BseXI	GCAGC	2 cut(s)	20, 753
BseYI	CCCAGC	3 cut(s)	545, 796, 815
BsgI	GTGCAG	1 cut(s)	126
BshFI	GGCC	2 cut(s)	225, 833
BshVI	ATCGAT	1 cut(s)	480
BsiSI	CCGG	1 cut(s)	834
BslFI	GGGAC	2 cut(s)	689, 761
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	5 cut(s)	293, 332, 365, 785, 851
BsmBI	CGTCTC	2 cut(s)	293, 785
BsmFI	GGGAC	2 cut(s)	689, 761
BsmI	GAATGC	1 cut(s)	507
BsnI	GGCC	2 cut(s)	225, 833
Bso31I	GGTCTC	2 cut(s)	332, 365
Bsp143I	GATC	5 cut(s)	124, 433, 588, 618, 714
BspACI	CCGC	4 cut(s)	47, 226, 487, 788
BspANI	GGCC	2 cut(s)	225, 833
BspCNI	CTCAG	1 cut(s)	464
BspDI	ATCGAT	1 cut(s)	480
BspHI	TCATGA	1 cut(s)	60
BspMAI	CTGCAG	1 cut(s)	36
BspPI	GGATC	2 cut(s)	119, 613
BspQI	GCTCTTC	1 cut(s)	164
BspTNI	GGTCTC	2 cut(s)	332, 365
BsrFI	RCCGGY	1 cut(s)	833
BsrI	ACTGG	2 cut(s)	101, 352
BssAI	RCCGGY	1 cut(s)	833
BssECI	CCNNGG	3 cut(s)	217, 256, 396
BssMI	GATC	5 cut(s)	124, 433, 588, 618, 714
BssSI	CACGAG	2 cut(s)	185, 807
BssT1I	CCWWGG	1 cut(s)	217
Bst2BI	CACGAG	2 cut(s)	185, 807
Bst2UI	CCWGG	3 cut(s)	258, 397, 830
Bst4CI	ACNGT	1 cut(s)	899
Bst6I	CTCTTC	2 cut(s)	164, 815
BstAPI	GCANNNNNTGC	2 cut(s)	31, 637
BstBAI	YACGTR	1 cut(s)	657
BstC8I	GCNNGC	2 cut(s)	6, 835
BstDEI	CTNAG	1 cut(s)	451
BstF5I	GGATG	1 cut(s)	508
BstKTI	GATC	5 cut(s)	127, 436, 591, 621, 717
BstMAI	GTCTC	5 cut(s)	293, 332, 365, 785, 851
BstMBI	GATC	5 cut(s)	124, 433, 588, 618, 714
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 222, 637
BstNI	CCWGG	3 cut(s)	258, 397, 830
BstNSI	RCATGY	1 cut(s)	310
BstPAI	GACNNNNGTC	1 cut(s)	282
BstSCI	CCNGG	3 cut(s)	256, 395, 828
BstSFI	CTRYAG	2 cut(s)	32, 240
BstSNI	TACGTA	1 cut(s)	657
BstV1I	GCAGC	2 cut(s)	20, 753
BstX2I	RGATCY	2 cut(s)	588, 618
BstYI	RGATCY	2 cut(s)	588, 618
Bsu15I	ATCGAT	1 cut(s)	480
BsuI	GTATCC	1 cut(s)	599
BsuRI	GGCC	2 cut(s)	225, 833
BsuTUI	ATCGAT	1 cut(s)	480
BtsCI	GGATG	1 cut(s)	508
Cac8I	GCNNGC	2 cut(s)	6, 835
CciI	TCATGA	1 cut(s)	60
Cfr10I	RCCGGY	1 cut(s)	833
ClaI	ATCGAT	1 cut(s)	480
CseI	GACGC	2 cut(s)	458, 802
Csp6I	GTAC	4 cut(s)	78, 88, 658, 724
CviAII	CATG	8 cut(s)	61, 118, 122, 307, 316, 661, 712, 767
CviJI	RGCY	9 cut(s)	11, 216, 225, 545, 550, 815, 833, 837, 874
CviKI_1	RGCY	9 cut(s)	11, 216, 225, 545, 550, 815, 833, 837, 874
CviQI	GTAC	4 cut(s)	78, 88, 658, 724
DdeI	CTNAG	1 cut(s)	451
DpnI	GATC	5 cut(s)	126, 435, 590, 620, 716
DpnII	GATC	5 cut(s)	124, 433, 588, 618, 714
EaeI	YGGCCR	1 cut(s)	223
Eam1104I	CTCTTC	2 cut(s)	164, 815
EarI	CTCTTC	2 cut(s)	164, 815
EciI	GGCGGA	1 cut(s)	803
Eco105I	TACGTA	1 cut(s)	657
Eco130I	CCWWGG	1 cut(s)	217
Eco31I	GGTCTC	2 cut(s)	332, 365
EcoRII	CCWGG	3 cut(s)	256, 395, 828
EcoT14I	CCWWGG	1 cut(s)	217
EcoT22I	ATGCAT	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	217
Esp3I	CGTCTC	2 cut(s)	293, 785
FaeI	CATG	8 cut(s)	64, 121, 125, 310, 319, 664, 715, 770
FaqI	GGGAC	2 cut(s)	689, 761
FatI	CATG	8 cut(s)	60, 117, 121, 306, 315, 660, 711, 766
FauNDI	CATATG	1 cut(s)	884
FbaI	TGATCA	1 cut(s)	714
FblI	GTMKAC	1 cut(s)	456
Fnu4HI	GCNGC	3 cut(s)	9, 226, 742
FokI	GGATG	1 cut(s)	515
Fsp4HI	GCNGC	3 cut(s)	9, 226, 742
GluI	GCNGC	3 cut(s)	9, 226, 742
GsaI	CCCAGC	3 cut(s)	549, 800, 819
HaeIII	GGCC	2 cut(s)	225, 833
HapII	CCGG	1 cut(s)	834
HgaI	GACGC	2 cut(s)	458, 802
Hin1II	CATG	8 cut(s)	64, 121, 125, 310, 319, 664, 715, 770
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	7 cut(s)	64, 205, 449, 477, 749, 802, 823
HpaII	CCGG	1 cut(s)	834
HphI	GGTGA	2 cut(s)	604, 818
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	3 cut(s)	277, 759, 841
Hpy188III	TCNNGA	6 cut(s)	61, 128, 290, 440, 586, 850
Hpy8I	GTNNAC	1 cut(s)	457
HpyAV	CCTTC	4 cut(s)	121, 386, 493, 522
HpyCH4III	ACNGT	1 cut(s)	899
HpyCH4IV	ACGT	1 cut(s)	656
HpyCH4V	TGCA	7 cut(s)	4, 25, 34, 85, 121, 143, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 222, 637
HpyF3I	CTNAG	1 cut(s)	451
HpySE526I	ACGT	1 cut(s)	656
Hsp92II	CATG	8 cut(s)	64, 121, 125, 310, 319, 664, 715, 770
KroI	GCCGGC	1 cut(s)	833
KroNI	GCCGGC	1 cut(s)	835
Ksp22I	TGATCA	1 cut(s)	714
Kzo9I	GATC	5 cut(s)	124, 433, 588, 618, 714
LguI	GCTCTTC	1 cut(s)	164
Lsp1109I	GCAGC	2 cut(s)	20, 753
MaeII	ACGT	1 cut(s)	656
MaeIII	GTNAC	2 cut(s)	734, 824
MalI	GATC	5 cut(s)	126, 435, 590, 620, 716
MboI	GATC	5 cut(s)	124, 433, 588, 618, 714
MboII	GAAGA	4 cut(s)	29, 181, 337, 832
MflI	RGATCY	2 cut(s)	588, 618
MluCI	AATT	7 cut(s)	175, 198, 210, 406, 521, 563, 761
MlyI	GAGTC	3 cut(s)	443, 743, 832
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	4 cut(s)	315, 632, 764, 816
Mph1103I	ATGCAT	1 cut(s)	123
MroNI	GCCGGC	1 cut(s)	833
MseI	TTAA	1 cut(s)	179
MslI	CAYNNNNRTG	1 cut(s)	887
MspI	CCGG	1 cut(s)	834
MspR9I	CCNGG	3 cut(s)	258, 397, 830
Mva1269I	GAATGC	1 cut(s)	507
MvaI	CCWGG	3 cut(s)	258, 397, 830
MwoI	GCNNNNNNNGC	3 cut(s)	31, 222, 637
NaeI	GCCGGC	1 cut(s)	835
NdeI	CATATG	1 cut(s)	884
NdeII	GATC	5 cut(s)	124, 433, 588, 618, 714
NgoMIV	GCCGGC	1 cut(s)	833
NlaIII	CATG	8 cut(s)	64, 121, 125, 310, 319, 664, 715, 770
NmuCI	GTSAC	2 cut(s)	734, 824
NsiI	ATGCAT	1 cut(s)	123
NspI	RCATGY	1 cut(s)	310
PagI	TCATGA	1 cut(s)	60
PciI	ACATGT	1 cut(s)	306
PciSI	GCTCTTC	1 cut(s)	164
PctI	GAATGC	1 cut(s)	507
PdiI	GCCGGC	1 cut(s)	835
PfeI	GAWTC	4 cut(s)	64, 205, 477, 802
PflFI	GACNNNGTC	1 cut(s)	452
PkrI	GCNGC	3 cut(s)	10, 227, 743
PleI	GAGTC	3 cut(s)	443, 743, 831
PpsI	GAGTC	3 cut(s)	443, 743, 831
Ppu21I	YACGTR	1 cut(s)	657
PscI	ACATGT	1 cut(s)	306
PshAI	GACNNNNGTC	1 cut(s)	282
PsiI	TTATAA	1 cut(s)	270
Psp6I	CCWGG	3 cut(s)	256, 395, 828
PspFI	CCCAGC	3 cut(s)	545, 796, 815
PspGI	CCWGG	3 cut(s)	256, 395, 828
PstI	CTGCAG	1 cut(s)	36
PsuI	RGATCY	2 cut(s)	588, 618
PsyI	GACNNNGTC	1 cut(s)	452
RsaI	GTAC	4 cut(s)	79, 89, 659, 725
RsaNI	GTAC	4 cut(s)	78, 88, 658, 724
RseI	CAYNNNNRTG	1 cut(s)	887
SalI	GTCGAC	1 cut(s)	455
SapI	GCTCTTC	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	3 cut(s)	9, 226, 742
Sau3AI	GATC	5 cut(s)	124, 433, 588, 618, 714
ScaI	AGTACT	1 cut(s)	89
SchI	GAGTC	3 cut(s)	443, 743, 832
ScrFI	CCNGG	3 cut(s)	258, 397, 830
SfcI	CTRYAG	2 cut(s)	32, 240
SmiMI	CAYNNNNRTG	1 cut(s)	887
SmlI	CTYRAG	1 cut(s)	869
SmoI	CTYRAG	1 cut(s)	869
SnaBI	TACGTA	1 cut(s)	657
Sse9I	AATT	7 cut(s)	175, 198, 210, 406, 521, 563, 761
SsiI	CCGC	4 cut(s)	47, 226, 487, 788
StyD4I	CCNGG	3 cut(s)	256, 395, 828
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	1 cut(s)	899
TaiI	ACGT	1 cut(s)	659
TaqI	TCGA	4 cut(s)	15, 291, 456, 480
TasI	AATT	7 cut(s)	175, 198, 210, 406, 521, 563, 761
TatI	WGTACW	2 cut(s)	87, 723
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	4 cut(s)	64, 205, 477, 802
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TseFI	GTSAC	2 cut(s)	734, 824
TseI	GCWGC	2 cut(s)	8, 741
Tsp45I	GTSAC	2 cut(s)	734, 824
TspDTI	ATGAA	2 cut(s)	49, 77
TspGWI	ACGGA	2 cut(s)	396, 419
Tth111I	GACNNNGTC	1 cut(s)	452
XapI	RAATTY	2 cut(s)	198, 521
XceI	RCATGY	1 cut(s)	310
XmiI	GTMKAC	1 cut(s)	456
ZrmI	AGTACT	1 cut(s)	89
Zsp2I	ATGCAT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.