Rh2DG392800

CCR4-associated factor 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000757
Physical Location & Seq
Reverse (-)
57066514 .. 57067173
660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG392800.1

Sequence Viewer

Length: 660 bp
ATGATGAAGACCAATGTGGACCAAACCCATATTATCCACTTGGGTCTTTCACTCTCTGACCCATTTGGGAATTTTCCGATTTATGATGGTGCCTACTGTTGTTGGGAGTTTAATTTCAATGATTTCGATGTAGACTGTGCTAACCATTTGCGGAATAGTGTCTCGATTGATGTCCTGAAGCAGCAAGGAATAGACTTTTCAGAAAACAAATGCACTGGTATTTGTTCTGCAGACTTTGCTGAGGAGATTAAGAGGTCTGGGCTAGTGGAGTTGCTTCCTTGCTTGACTTGGGCTCCTTTCCAGAGTGCATATGATTTTGGGTACTTGATAAAGATGTTCACTGGGAACAAGGAATTTCCAGAGGATATCAAGGAGTTCATGGGGAACGTGAAGACATATTTTGGACCGAATGTGTACGACATCAAGTACATGATGAAGTTTTGTGATGGACTGTTTGGCGGTTTGAATAGCGTGGCAGAAACCCTTGGCGTTGACCGTGTGGCTGGGAGTAGCCACCAGGCTGGTTCTGATAGTCTTTTGACACTGCAAACGTTTGTCAAGATGCTCAAGATGGAGAAGAACAAAGGGAAAAATCTCTGGGAAGAATGTGGAGGAGTTTTGTTTGGTTTAGGAAACTTGGATTTCTGGCATCATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CAF1 RVT_3

Protein Analysis

219

Amino Acids

24.66

Weight (kDa)

4.97

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 89
AccI GTMKAC 1 cut(s) 132
AciI CCGC 2 cut(s) 151, 459
AclI AACGTT 1 cut(s) 551
AcsI RAATTY 2 cut(s) 70, 353
AcuI CTGAAG 1 cut(s) 197
AfaI GTAC 3 cut(s) 323, 416, 428
AgsI TTSAA 2 cut(s) 118, 466
AjnI CCWGG 1 cut(s) 516
Alw26I GTCTC 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 181
ApoI RAATTY 2 cut(s) 70, 353
AspS9I GGNCC 2 cut(s) 19, 404
AvaII GGWCC 2 cut(s) 19, 404
BanI GGYRCC 1 cut(s) 89
BanII GRGCYC 1 cut(s) 295
BbsI GAAGAC 2 cut(s) 14, 398
BbvCI CCTCAGC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 193
BccI CCATC 3 cut(s) 80, 440, 565
BciT130I CCWGG 1 cut(s) 518
BcoDI GTCTC 1 cut(s) 166
BfaI CTAG 1 cut(s) 263
BfmI CTRYAG 1 cut(s) 228
BisI GCNGC 1 cut(s) 182
BlsI GCNGC 1 cut(s) 183
Bme1390I CCNGG 1 cut(s) 518
Bme18I GGWCC 2 cut(s) 19, 404
BmgT120I GGNCC 2 cut(s) 19, 404
BmiI GGNNCC 2 cut(s) 91, 294
BmrFI CCNGG 1 cut(s) 518
BmrI ACTGGG 1 cut(s) 351
BmsI GCATC 1 cut(s) 552
BmuI ACTGGG 1 cut(s) 351
BpiI GAAGAC 2 cut(s) 14, 398
Bpu10I CCTNAGC 1 cut(s) 240
BpuEI CTTGAG 1 cut(s) 551
BsaJI CCNNGG 1 cut(s) 484
BsaXI ACNNNNNCTCC 2 cut(s) 277, 307
Bse1I ACTGG 2 cut(s) 220, 346
BseBI CCWGG 1 cut(s) 518
BseDI CCNNGG 1 cut(s) 484
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 2 cut(s) 220, 346
BseRI GAGGAG 2 cut(s) 257, 627
BseXI GCAGC 1 cut(s) 193
BseYI CCCAGC 1 cut(s) 503
BshNI GGYRCC 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 295
BspACI CCGC 2 cut(s) 151, 459
BspCNI CTCAG 1 cut(s) 232
BspLI GGNNCC 2 cut(s) 91, 294
BspMAI CTGCAG 1 cut(s) 232
BspT107I GGYRCC 1 cut(s) 89
BsrI ACTGG 2 cut(s) 220, 346
BssECI CCNNGG 1 cut(s) 484
BssT1I CCWWGG 1 cut(s) 484
Bst2UI CCWGG 1 cut(s) 518
Bst4CI ACNGT 4 cut(s) 98, 137, 453, 497
BstAPI GCANNNNNTGC 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 240
BstMAI GTCTC 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 1 cut(s) 518
BstSCI CCNGG 1 cut(s) 516
BstSFI CTRYAG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 2 cut(s) 14, 398
BstXI CCANNNNNNTGG 1 cut(s) 521
BtsI GCAGTG 1 cut(s) 542
BtsIMutI CAGTG 3 cut(s) 213, 339, 542
Cfr13I GGNCC 2 cut(s) 19, 404
Csp6I GTAC 3 cut(s) 322, 415, 427
CviAII CATG 2 cut(s) 379, 430
CviJI RGCY 5 cut(s) 262, 293, 503, 513, 521
CviKI_1 RGCY 5 cut(s) 262, 293, 503, 513, 521
CviQI GTAC 3 cut(s) 322, 415, 427
DdeI CTNAG 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 484
Eco24I GRGCYC 1 cut(s) 295
Eco32I GATATC 1 cut(s) 367
Eco47I GGWCC 2 cut(s) 19, 404
Eco57I CTGAAG 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 516
EcoRV GATATC 1 cut(s) 367
EcoT14I CCWWGG 1 cut(s) 484
EcoT38I GRGCYC 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 484
FaeI CATG 2 cut(s) 382, 433
FaiI YATR 7 cut(s) 30, 84, 310, 312, 380, 397, 431
FatI CATG 2 cut(s) 378, 429
FauNDI CATATG 1 cut(s) 310
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 1 cut(s) 182
FriOI GRGCYC 1 cut(s) 295
Fsp4HI GCNGC 1 cut(s) 182
FspBI CTAG 1 cut(s) 263
GluI GCNGC 1 cut(s) 182
GsaI CCCAGC 1 cut(s) 507
Hin1II CATG 2 cut(s) 382, 433
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
Hpy166II GTNNAC 5 cut(s) 19, 133, 339, 415, 493
Hpy188I TCNGA 4 cut(s) 58, 78, 202, 529
Hpy188III TCNNGA 6 cut(s) 163, 175, 301, 359, 559, 568
Hpy8I GTNNAC 5 cut(s) 19, 133, 339, 415, 493
HpyCH4III ACNGT 4 cut(s) 98, 137, 453, 497
HpyCH4IV ACGT 2 cut(s) 387, 551
HpyCH4V TGCA 4 cut(s) 213, 230, 308, 547
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 2 cut(s) 387, 551
Hsp92II CATG 2 cut(s) 382, 433
LmnI GCTCC 1 cut(s) 298
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 1 cut(s) 552
MaeI CTAG 1 cut(s) 263
MaeII ACGT 2 cut(s) 387, 551
MboII GAAGA 4 cut(s) 19, 403, 589, 614
MhlI GDGCHC 1 cut(s) 295
MluCI AATT 3 cut(s) 70, 112, 353
MnlI CCTC 4 cut(s) 235, 246, 355, 605
MseI TTAA 2 cut(s) 111, 249
MspR9I CCNGG 1 cut(s) 518
MvaI CCWGG 1 cut(s) 518
MwoI GCNNNNNNNGC 1 cut(s) 236
NdeI CATATG 1 cut(s) 310
NlaIII CATG 2 cut(s) 382, 433
NlaIV GGNNCC 2 cut(s) 91, 294
PkrI GCNGC 1 cut(s) 183
Psp1406I AACGTT 1 cut(s) 551
Psp6I CCWGG 1 cut(s) 516
PspFI CCCAGC 1 cut(s) 503
PspGI CCWGG 1 cut(s) 516
PspN4I GGNNCC 2 cut(s) 91, 294
PspPI GGNCC 2 cut(s) 19, 404
PstI CTGCAG 1 cut(s) 232
RsaI GTAC 3 cut(s) 323, 416, 428
RsaNI GTAC 3 cut(s) 322, 415, 427
SaqAI TTAA 2 cut(s) 111, 249
SatI GCNGC 1 cut(s) 182
Sau96I GGNCC 2 cut(s) 19, 404
ScrFI CCNGG 1 cut(s) 518
SduI GDGCHC 1 cut(s) 295
SetI ASST 3 cut(s) 257, 390, 554
SfaNI GCATC 1 cut(s) 552
SfcI CTRYAG 1 cut(s) 228
SinI GGWCC 2 cut(s) 19, 404
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
Sse9I AATT 3 cut(s) 70, 112, 353
SsiI CCGC 2 cut(s) 151, 459
SspMI CTAG 1 cut(s) 263
StyD4I CCNGG 1 cut(s) 516
StyI CCWWGG 1 cut(s) 484
TaaI ACNGT 4 cut(s) 98, 137, 453, 497
TaiI ACGT 2 cut(s) 390, 554
TaqI TCGA 2 cut(s) 126, 164
TaqII GACCGA 1 cut(s) 421
TasI AATT 3 cut(s) 70, 112, 353
TatI WGTACW 1 cut(s) 426
Tru1I TTAA 2 cut(s) 111, 249
Tru9I TTAA 2 cut(s) 111, 249
TscAI CASTG 3 cut(s) 220, 346, 549
TseI GCWGC 1 cut(s) 181
TspDTI ATGAA 3 cut(s) 20, 367, 449
TspRI CASTG 3 cut(s) 220, 346, 549
VpaK11BI GGWCC 2 cut(s) 19, 404
XapI RAATTY 2 cut(s) 70, 353
XmiI GTMKAC 1 cut(s) 132
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.