Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000757

Physical Location & Seq

Genomic Coordinates Forward (+)

15940184 .. 15940903

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G44240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAGTTTAATAGAAGATTGTCTAAGAAGCTACCGTTTCATTGCAATAGACACAGAGTTTCCATCTACTTTGAGGGAAACTACACAACATGCGACAGATGAGGAACGTTACATGGATATGAGTTTTAGTGTGGACAGAGCAAAATTGATCCAGTTAGGGCTAACTCTGTTCGATATCAATGGAAGAATTGGAGGAACATGGGAGATCAATTTCTCTGATTTCGGAGTTGACGATGCTAGAAACGAGAAATCCATTGAGTTCCTTAGACGCAACGGTCTAGATCTAAGGAAGATTAGAGAAGAGGGCATCAGAATCGAGGGTTTCTTCTCGGAGATGTTTTGGATGCTGAAGAAGACGAGGAGGAATATTACTTGGGTCACGTTTCATGGATCTTACGACATCGCCTATTTACTCAAGGGTTTCACCGGAGAAGCTTTACCTGTGACTTCAGAGAGGTTTTCTAAAGCGGTCGCGAGAGTTCTCGGTTCTGTTTACGATTTGAAAGTCATGGCGGGTCGATGTGAAGGACTAAGTAGCAGGCTTGGTTTGGAGACTCTAGCGCATGAGTTCGGACTTAACCGTGTTGGTACTGCACACCACGCCGGTTCCAATAACGAGTTAACGGCGATGGTTTTCGCTAAGGTACTGTCTCCGTTTCCTCTCTTTCTTCGTTTTGGTTCTTTGGAGTTAAGAACTATAGAAAGTGAAGCAATAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000288 GO:0000291 GO:0000932 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004535 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017148 GO:0019222 GO:0019439 GO:0030014 GO:0030015 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032991 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CAF1

Protein Analysis

239

Amino Acids

27.21

Weight (kDa)

6.01

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAF1	PF04857	4 - 104	1.5e-10	CAF1 family ribonuclease
CAF1	PF04857	125 - 189	9.1e-06	CAF1 family ribonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06450 AT1G27820 AT1G27890 AT1G61470 AT3G44240
fragaria_vesca	FvH4_6g28110 FvH4_6g28140 FvH4_6g29280 FvH4_6g29280
malus_domestica	MD03G1041900.v1.1 MD09G1229300.v1.1 MD11G1042700.v1.1 MD12G1082100.v1.1 MD14G1080800.v1.1
prunus_persica	Prupe.1G188200_v2.0.a1 Prupe.1G190800_v2.0.a1 Prupe.1G190900_v2.0.a1 Prupe.3G105100_v2.0.a1 Prupe.7G010200_v2.0.a1
pyrus_communis	pycom09g14790 pycom14g07010
rosa_chinensis	RchiOBHm_Chr2g0132091 RchiOBHm_Chr2g0132101 RchiOBHm_Chr2g0134441 RchiOBHm_Chr2g0134461 RchiOBHm_Chr2g0136851 RchiOBHm_Chr2g0167821 RchiOBHm_Chr2g0167861 RchiOBHm_Chr2g0167901 RchiOBHm_Chr2g0167921 RchiOBHm_Chr6g0266841
rosa_laevigata	RLG00000019225 RLG00000019226 RLG00000019393
rosa_multiflora	Rmu_sc0001299.1_g000004 Rmu_sc0005571.1_g000018
rosa_roxburghii	Rroxscaffold_2G00110210 Rroxscaffold_2G00110240 Rroxscaffold_2G00112400 Rroxscaffold_3G00239330 Rroxscaffold_4G00313080
rosa_rugosa	Rorug02G0302000 Rorug02G0302200 Rorug02G0317200 Rorug02G0317200 Rorug03G0220600
rosa_samantha	Rh2AG355100 Rh2AG355200 Rh2AG369800 Rh2AG369900 Rh2AG384800 Rh2CG338700 Rh2CG338800 Rh2CG353700 Rh2CG371400 Rh2DG370100 Rh2DG377900 Rh2DG378000 Rh2DG392800 Rh2DG392900 Rh2DG408200 Rh6BG148800 Rh6BG149300 Rh6CG159200 Rh6DG133000 Rh6DG133400
rosa_wichuraiana	Rw1G013790 Rw2G028830 Rw2G028840 Rw2G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	273
AccII	CGCG	1 cut(s)	473
AciI	CCGC	2 cut(s)	467, 512
AclI	AACGTT	1 cut(s)	106
AclWI	GGATC	2 cut(s)	142, 397
AcuI	CTGAAG	2 cut(s)	368, 432
AfaI	GTAC	2 cut(s)	589, 645
AgsI	TTSAA	1 cut(s)	502
AluBI	AGCT	2 cut(s)	30, 434
AluI	AGCT	2 cut(s)	30, 434
Alw26I	GTCTC	2 cut(s)	545, 654
AlwI	GGATC	2 cut(s)	142, 397
AspLEI	GCGC	1 cut(s)	562
AsuHPI	GGTGA	1 cut(s)	415
BbsI	GAAGAC	1 cut(s)	359
BccI	CCATC	2 cut(s)	70, 622
BceAI	ACGGC	1 cut(s)	639
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BcoDI	GTCTC	2 cut(s)	545, 654
BfaI	CTAG	3 cut(s)	237, 278, 557
BfmI	CTRYAG	1 cut(s)	696
BglII	AGATCT	1 cut(s)	280
BmiI	GGNNCC	1 cut(s)	607
BmsI	GCATC	3 cut(s)	223, 315, 333
BpiI	GAAGAC	1 cut(s)	359
Bpu10I	CCTNAGC	1 cut(s)	639
BpuEI	CTTGAG	1 cut(s)	398
BsaWI	WCCGGW	1 cut(s)	425
Bse118I	RCCGGY	1 cut(s)	602
Bse1I	ACTGG	1 cut(s)	151
Bse3DI	GCAATG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	348
BseMI	GCAATG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	373
BsgI	GTGCAG	1 cut(s)	576
Bsh1236I	CGCG	1 cut(s)	473
Bsh1285I	CGRYCG	1 cut(s)	471
BsiEI	CGRYCG	1 cut(s)	471
BsiSI	CCGG	2 cut(s)	426, 603
BsmAI	GTCTC	2 cut(s)	545, 654
Bsp143I	GATC	4 cut(s)	147, 204, 280, 389
Bsp68I	TCGCGA	1 cut(s)	473
BspACI	CCGC	2 cut(s)	467, 512
BspFNI	CGCG	1 cut(s)	473
BspLI	GGNNCC	1 cut(s)	607
BspPI	GGATC	2 cut(s)	142, 397
BsrDI	GCAATG	1 cut(s)	39
BsrFI	RCCGGY	1 cut(s)	602
BsrI	ACTGG	1 cut(s)	151
BssAI	RCCGGY	1 cut(s)	602
BssMI	GATC	4 cut(s)	147, 204, 280, 389
Bst4CI	ACNGT	4 cut(s)	35, 275, 581, 648
Bst6I	CTCTTC	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	539
BstDEI	CTNAG	5 cut(s)	23, 263, 284, 530, 639
BstF5I	GGATG	1 cut(s)	348
BstFNI	CGCG	1 cut(s)	473
BstHHI	GCGC	1 cut(s)	562
BstKTI	GATC	4 cut(s)	150, 207, 283, 392
BstMAI	GTCTC	2 cut(s)	545, 654
BstMBI	GATC	4 cut(s)	147, 204, 280, 389
BstMCI	CGRYCG	1 cut(s)	471
BstMWI	GCNNNNNNNGC	1 cut(s)	599
BstNSI	RCATGY	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	696
BstUI	CGCG	1 cut(s)	473
BstV2I	GAAGAC	1 cut(s)	359
BstX2I	RGATCY	2 cut(s)	280, 389
BstYI	RGATCY	2 cut(s)	280, 389
BtgZI	GCGATG	2 cut(s)	385, 641
BtsCI	GGATG	1 cut(s)	348
BtuMI	TCGCGA	1 cut(s)	473
Cac8I	GCNNGC	1 cut(s)	539
CfoI	GCGC	1 cut(s)	562
Cfr10I	RCCGGY	1 cut(s)	602
CseI	GACGC	1 cut(s)	276
Csp6I	GTAC	2 cut(s)	588, 644
CviAII	CATG	6 cut(s)	89, 112, 198, 386, 508, 563
CviJI	RGCY	4 cut(s)	30, 160, 434, 541
CviKI_1	RGCY	4 cut(s)	30, 160, 434, 541
CviQI	GTAC	2 cut(s)	588, 644
DdeI	CTNAG	5 cut(s)	23, 263, 284, 530, 639
DpnI	GATC	4 cut(s)	149, 206, 282, 391
DpnII	GATC	4 cut(s)	147, 204, 280, 389
DrdI	GACNNNNNNGTC	1 cut(s)	273
DseDI	GACNNNNNNGTC	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco32I	GATATC	1 cut(s)	175
Eco57I	CTGAAG	2 cut(s)	368, 432
EcoRV	GATATC	1 cut(s)	175
FaeI	CATG	6 cut(s)	92, 115, 201, 389, 511, 566
FaiI	YATR	8 cut(s)	90, 113, 119, 199, 387, 509, 564, 698
FatI	CATG	6 cut(s)	88, 111, 197, 385, 507, 562
FauI	CCCGC	1 cut(s)	505
FokI	GGATG	1 cut(s)	355
FspBI	CTAG	3 cut(s)	237, 278, 557
GlaI	GCGC	1 cut(s)	561
HapII	CCGG	2 cut(s)	426, 603
HgaI	GACGC	1 cut(s)	276
HhaI	GCGC	1 cut(s)	562
Hin1II	CATG	6 cut(s)	92, 115, 201, 389, 511, 566
Hin6I	GCGC	1 cut(s)	560
HinP1I	GCGC	1 cut(s)	560
HincII	GTYRAC	2 cut(s)	229, 621
HindII	GTYRAC	2 cut(s)	229, 621
HindIII	AAGCTT	1 cut(s)	432
HinfI	GANTC	2 cut(s)	312, 553
HpaI	GTTAAC	1 cut(s)	621
HpaII	CCGG	2 cut(s)	426, 603
HphI	GGTGA	1 cut(s)	415
Hpy166II	GTNNAC	4 cut(s)	133, 229, 493, 621
Hpy188I	TCNGA	6 cut(s)	217, 224, 311, 331, 451, 572
Hpy188III	TCNNGA	2 cut(s)	278, 472
Hpy8I	GTNNAC	4 cut(s)	133, 229, 493, 621
HpyAV	CCTTC	1 cut(s)	518
HpyCH4III	ACNGT	4 cut(s)	35, 275, 581, 648
HpyCH4IV	ACGT	2 cut(s)	106, 380
HpyCH4V	TGCA	2 cut(s)	44, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	599
HpyF3I	CTNAG	5 cut(s)	23, 263, 284, 530, 639
HpySE526I	ACGT	2 cut(s)	106, 380
Hsp92II	CATG	6 cut(s)	92, 115, 201, 389, 511, 566
HspAI	GCGC	1 cut(s)	560
KspAI	GTTAAC	1 cut(s)	621
Kzo9I	GATC	4 cut(s)	147, 204, 280, 389
LpnPI	CCDG	5 cut(s)	164, 439, 453, 523, 616
LweI	GCATC	3 cut(s)	223, 315, 333
MaeI	CTAG	3 cut(s)	237, 278, 557
MaeII	ACGT	2 cut(s)	106, 380
MaeIII	GTNAC	3 cut(s)	107, 376, 442
MalI	GATC	4 cut(s)	149, 206, 282, 391
MboI	GATC	4 cut(s)	147, 204, 280, 389
MboII	GAAGA	8 cut(s)	26, 195, 301, 311, 316, 361, 364, 659
MflI	RGATCY	2 cut(s)	280, 389
MluCI	AATT	3 cut(s)	143, 186, 208
MlyI	GAGTC	1 cut(s)	547
MnlI	CCTC	9 cut(s)	66, 94, 185, 295, 310, 351, 354, 447, 669
MseI	TTAA	4 cut(s)	8, 576, 620, 689
MslI	CAYNNNNRTG	1 cut(s)	116
MspI	CCGG	2 cut(s)	426, 603
MvnI	CGCG	1 cut(s)	473
MwoI	GCNNNNNNNGC	1 cut(s)	599
NdeII	GATC	4 cut(s)	147, 204, 280, 389
NlaIII	CATG	6 cut(s)	92, 115, 201, 389, 511, 566
NlaIV	GGNNCC	1 cut(s)	607
NmuCI	GTSAC	2 cut(s)	376, 442
NruI	TCGCGA	1 cut(s)	473
NspI	RCATGY	1 cut(s)	92
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	312
PleI	GAGTC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	547
Psp1406I	AACGTT	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	607
PsuI	RGATCY	2 cut(s)	280, 389
RruI	TCGCGA	1 cut(s)	473
RsaI	GTAC	2 cut(s)	589, 645
RsaNI	GTAC	2 cut(s)	588, 644
RseI	CAYNNNNRTG	1 cut(s)	116
SaqAI	TTAA	4 cut(s)	8, 576, 620, 689
Sau3AI	GATC	4 cut(s)	147, 204, 280, 389
SchI	GAGTC	1 cut(s)	547
SetI	ASST	7 cut(s)	32, 109, 383, 436, 442, 458, 645
SfaNI	GCATC	3 cut(s)	223, 315, 333
SfcI	CTRYAG	1 cut(s)	696
SmiMI	CAYNNNNRTG	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	3 cut(s)	143, 186, 208
SsiI	CCGC	2 cut(s)	467, 512
SspI	AATATT	1 cut(s)	367
SspMI	CTAG	3 cut(s)	237, 278, 557
TaaI	ACNGT	4 cut(s)	35, 275, 581, 648
TaiI	ACGT	2 cut(s)	109, 383
TaqI	TCGA	3 cut(s)	171, 315, 517
TasI	AATT	3 cut(s)	143, 186, 208
TfiI	GAWTC	1 cut(s)	312
Tru1I	TTAA	4 cut(s)	8, 576, 620, 689
Tru9I	TTAA	4 cut(s)	8, 576, 620, 689
TseFI	GTSAC	2 cut(s)	376, 442
Tsp45I	GTSAC	2 cut(s)	376, 442
TspDTI	ATGAA	2 cut(s)	28, 374
TspGWI	ACGGA	1 cut(s)	642
XbaI	TCTAGA	1 cut(s)	277
XceI	RCATGY	1 cut(s)	92
XspI	CTAG	3 cut(s)	237, 278, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.