exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 547, 560 |
| AcsI | RAATTY | 6 cut(s) | 16, 71, 97, 142, 284, 298 |
| AcuI | CTGAAG | 1 cut(s) | 484 |
| AflIII | ACRYGT | 1 cut(s) | 202 |
| AgsI | TTSAA | 1 cut(s) | 76 |
| AluBI | AGCT | 3 cut(s) | 368, 377, 504 |
| AluI | AGCT | 3 cut(s) | 368, 377, 504 |
| Alw26I | GTCTC | 2 cut(s) | 32, 456 |
| AlwI | GGATC | 2 cut(s) | 547, 560 |
| ApeKI | GCWGC | 1 cut(s) | 226 |
| ApoI | RAATTY | 6 cut(s) | 16, 71, 97, 142, 284, 298 |
| AsuHPI | GGTGA | 1 cut(s) | 323 |
| AsuII | TTCGAA | 1 cut(s) | 383 |
| BaeGI | GKGCMC | 1 cut(s) | 65 |
| BamHI | GGATCC | 1 cut(s) | 552 |
| BbvI | GCAGC | 1 cut(s) | 213 |
| BcoDI | GTCTC | 2 cut(s) | 32, 456 |
| BfaI | CTAG | 2 cut(s) | 84, 559 |
| BisI | GCNGC | 1 cut(s) | 227 |
| BlsI | GCNGC | 1 cut(s) | 228 |
| BmiI | GGNNCC | 1 cut(s) | 554 |
| BmsI | GCATC | 1 cut(s) | 238 |
| Bpu14I | TTCGAA | 1 cut(s) | 383 |
| BpuEI | CTTGAG | 1 cut(s) | 438 |
| BsaI | GGTCTC | 1 cut(s) | 32 |
| Bse1I | ACTGG | 2 cut(s) | 116, 514 |
| BseGI | GGATG | 1 cut(s) | 453 |
| BseNI | ACTGG | 2 cut(s) | 116, 514 |
| BseSI | GKGCMC | 1 cut(s) | 65 |
| BseXI | GCAGC | 1 cut(s) | 213 |
| BseYI | CCCAGC | 1 cut(s) | 443 |
| BsmAI | GTCTC | 2 cut(s) | 32, 456 |
| Bso31I | GGTCTC | 1 cut(s) | 32 |
| Bsp119I | TTCGAA | 1 cut(s) | 383 |
| Bsp1286I | GDGCHC | 1 cut(s) | 65 |
| Bsp143I | GATC | 1 cut(s) | 552 |
| BspLI | GGNNCC | 1 cut(s) | 554 |
| BspPI | GGATC | 2 cut(s) | 547, 560 |
| BspT104I | TTCGAA | 1 cut(s) | 383 |
| BspTNI | GGTCTC | 1 cut(s) | 32 |
| BsrI | ACTGG | 2 cut(s) | 116, 514 |
| BssMI | GATC | 1 cut(s) | 552 |
| Bst4CI | ACNGT | 2 cut(s) | 389, 400 |
| BstBI | TTCGAA | 1 cut(s) | 383 |
| BstF5I | GGATG | 1 cut(s) | 453 |
| BstKTI | GATC | 1 cut(s) | 555 |
| BstMAI | GTCTC | 2 cut(s) | 32, 456 |
| BstMBI | GATC | 1 cut(s) | 552 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 332, 374 |
| BstNSI | RCATGY | 1 cut(s) | 206 |
| BstSLI | GKGCMC | 1 cut(s) | 65 |
| BstV1I | GCAGC | 1 cut(s) | 213 |
| BstX2I | RGATCY | 1 cut(s) | 552 |
| BstYI | RGATCY | 1 cut(s) | 552 |
| BtsCI | GGATG | 1 cut(s) | 453 |
| BtsI | GCAGTG | 1 cut(s) | 532 |
| BtsIMutI | CAGTG | 2 cut(s) | 507, 532 |
| CviAII | CATG | 3 cut(s) | 203, 220, 254 |
| CviJI | RGCY | 7 cut(s) | 226, 259, 272, 368, 377, 443, 504 |
| CviKI_1 | RGCY | 7 cut(s) | 226, 259, 272, 368, 377, 443, 504 |
| DpnI | GATC | 1 cut(s) | 554 |
| DpnII | GATC | 1 cut(s) | 552 |
| Eco31I | GGTCTC | 1 cut(s) | 32 |
| Eco57I | CTGAAG | 1 cut(s) | 484 |
| EcoRI | GAATTC | 1 cut(s) | 97 |
| FaeI | CATG | 3 cut(s) | 206, 223, 257 |
| FatI | CATG | 3 cut(s) | 202, 219, 253 |
| Fnu4HI | GCNGC | 1 cut(s) | 227 |
| FokI | GGATG | 1 cut(s) | 460 |
| Fsp4HI | GCNGC | 1 cut(s) | 227 |
| FspBI | CTAG | 2 cut(s) | 84, 559 |
| GluI | GCNGC | 1 cut(s) | 227 |
| GsaI | CCCAGC | 1 cut(s) | 447 |
| Hin1II | CATG | 3 cut(s) | 206, 223, 257 |
| HincII | GTYRAC | 2 cut(s) | 178, 396 |
| HindII | GTYRAC | 2 cut(s) | 178, 396 |
| HinfI | GANTC | 2 cut(s) | 340, 490 |
| HphI | GGTGA | 1 cut(s) | 323 |
| Hpy166II | GTNNAC | 2 cut(s) | 178, 396 |
| Hpy188I | TCNGA | 2 cut(s) | 40, 159 |
| Hpy188III | TCNNGA | 6 cut(s) | 84, 149, 208, 289, 344, 487 |
| Hpy8I | GTNNAC | 2 cut(s) | 178, 396 |
| Hpy99I | CGWCG | 1 cut(s) | 15 |
| HpyCH4III | ACNGT | 2 cut(s) | 389, 400 |
| HpyCH4V | TGCA | 2 cut(s) | 229, 520 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 332, 374 |
| Hsp92II | CATG | 3 cut(s) | 206, 223, 257 |
| Kzo9I | GATC | 1 cut(s) | 552 |
| LpnPI | CCDG | 8 cut(s) | 129, 221, 302, 363, 429, 472, 491, 495 |
| Lsp1109I | GCAGC | 1 cut(s) | 213 |
| LweI | GCATC | 1 cut(s) | 238 |
| MaeI | CTAG | 2 cut(s) | 84, 559 |
| MalI | GATC | 1 cut(s) | 554 |
| MboI | GATC | 1 cut(s) | 552 |
| MboII | GAAGA | 1 cut(s) | 269 |
| MflI | RGATCY | 1 cut(s) | 552 |
| MhlI | GDGCHC | 1 cut(s) | 65 |
| MlyI | GAGTC | 1 cut(s) | 484 |
| MnlI | CCTC | 2 cut(s) | 52, 543 |
| MseI | TTAA | 2 cut(s) | 282, 431 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 332, 374 |
| NdeII | GATC | 1 cut(s) | 552 |
| NlaIII | CATG | 3 cut(s) | 206, 223, 257 |
| NlaIV | GGNNCC | 1 cut(s) | 554 |
| NspI | RCATGY | 1 cut(s) | 206 |
| NspV | TTCGAA | 1 cut(s) | 383 |
| PciI | ACATGT | 1 cut(s) | 202 |
| PfeI | GAWTC | 1 cut(s) | 340 |
| PkrI | GCNGC | 1 cut(s) | 228 |
| PleI | GAGTC | 1 cut(s) | 484 |
| PpsI | GAGTC | 1 cut(s) | 484 |
| PscI | ACATGT | 1 cut(s) | 202 |
| PspFI | CCCAGC | 1 cut(s) | 443 |
| PspN4I | GGNNCC | 1 cut(s) | 554 |
| PsuI | RGATCY | 1 cut(s) | 552 |
| SaqAI | TTAA | 2 cut(s) | 282, 431 |
| SatI | GCNGC | 1 cut(s) | 227 |
| Sau3AI | GATC | 1 cut(s) | 552 |
| SchI | GAGTC | 1 cut(s) | 484 |
| SduI | GDGCHC | 1 cut(s) | 65 |
| SetI | ASST | 7 cut(s) | 333, 370, 379, 437, 460, 506, 518 |
| SfaNI | GCATC | 1 cut(s) | 238 |
| SfuI | TTCGAA | 1 cut(s) | 383 |
| SmlI | CTYRAG | 1 cut(s) | 453 |
| SmoI | CTYRAG | 1 cut(s) | 453 |
| SspI | AATATT | 1 cut(s) | 429 |
| SspMI | CTAG | 2 cut(s) | 84, 559 |
| TaaI | ACNGT | 2 cut(s) | 389, 400 |
| TaqI | TCGA | 3 cut(s) | 10, 383, 402 |
| TaqII | GACCGA | 1 cut(s) | 308 |
| TfiI | GAWTC | 1 cut(s) | 340 |
| Tru1I | TTAA | 2 cut(s) | 282, 431 |
| Tru9I | TTAA | 2 cut(s) | 282, 431 |
| TscAI | CASTG | 2 cut(s) | 514, 539 |
| TseI | GCWGC | 1 cut(s) | 226 |
| TspDTI | ATGAA | 5 cut(s) | 230, 242, 279, 378, 434 |
| TspRI | CASTG | 2 cut(s) | 514, 539 |
| XapI | RAATTY | 6 cut(s) | 16, 71, 97, 142, 284, 298 |
| XbaI | TCTAGA | 1 cut(s) | 83 |
| XceI | RCATGY | 1 cut(s) | 206 |
| XspI | CTAG | 2 cut(s) | 84, 559 |