Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000757

Physical Location & Seq

Genomic Coordinates Reverse (-)

54927040 .. 54938584

Gene Structure 11545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG369800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGAGTATGATGATGCTTATATTGTCTCGATTGATGTCCTGAAGCGGCAAGGAATAGACTTTTCCGAAAACAAATGCACTGGTATTTGTTCTGCAGACTTTGCTGAGGAGATTGAGAGGTCTGGGCTAGTGGAGTTGCTTCCTTGCTTGACTTGGGCTACTTTCCATATTGCATATGATTTTGGGTACTTGATAAAGATGTTCACTGGGAACAAGGAATTGCCAGAGGATATCAAGGAGTTCATGGGGAACGTGAAGACATATTTTGGACCGAATGTGTACAACATCAAGTACATGATGAAGTTTTGTGATGGACTGTTTGGCAGTTTGAATAGCGTGGCAGAAACCCTTGGCGTTGACCGTGTGGCTGGGAGTAGCCACCAGGCTGGTTCTGATAGTCTTTTGACACTGCAAACGTTTGTCAAGATGCTCAAGATGGAGAAGAACAAAGGGAAAGAGCTCTGGGAAGAATGTGGAGGAGTTTTGTTTGGTTTAGGAAGCTTGGATTTCTGGCATCATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CAF1 RVT_3

Protein Analysis

174

Amino Acids

19.61

Weight (kDa)

4.88

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06450 AT1G27820 AT1G27890 AT1G61470 AT3G44240
fragaria_vesca	FvH4_6g28110 FvH4_6g28140 FvH4_6g29280 FvH4_6g29280
malus_domestica	MD03G1041900.v1.1 MD09G1229300.v1.1 MD11G1042700.v1.1 MD12G1082100.v1.1 MD14G1080800.v1.1
prunus_persica	Prupe.1G188200_v2.0.a1 Prupe.1G190800_v2.0.a1 Prupe.1G190900_v2.0.a1 Prupe.3G105100_v2.0.a1 Prupe.7G010200_v2.0.a1
pyrus_communis	pycom09g14790 pycom14g07010
rosa_chinensis	RchiOBHm_Chr2g0132091 RchiOBHm_Chr2g0132101 RchiOBHm_Chr2g0134441 RchiOBHm_Chr2g0134461 RchiOBHm_Chr2g0136851 RchiOBHm_Chr2g0167821 RchiOBHm_Chr2g0167861 RchiOBHm_Chr2g0167901 RchiOBHm_Chr2g0167921 RchiOBHm_Chr6g0266841
rosa_laevigata	RLG00000019225 RLG00000019226 RLG00000019393
rosa_multiflora	Rmu_sc0001299.1_g000004 Rmu_sc0005571.1_g000018
rosa_roxburghii	Rroxscaffold_2G00110210 Rroxscaffold_2G00110240 Rroxscaffold_2G00112400 Rroxscaffold_3G00239330 Rroxscaffold_4G00313080
rosa_rugosa	Rorug02G0302000 Rorug02G0302200 Rorug02G0317200 Rorug02G0317200 Rorug03G0220600
rosa_samantha	Rh2AG355100 Rh2AG355200 Rh2AG369800 Rh2AG369900 Rh2AG384800 Rh2CG338700 Rh2CG338800 Rh2CG353700 Rh2CG371400 Rh2DG370100 Rh2DG377900 Rh2DG378000 Rh2DG392800 Rh2DG392900 Rh2DG408200 Rh6BG148800 Rh6BG149300 Rh6CG159200 Rh6DG133000 Rh6DG133400
rosa_wichuraiana	Rw1G013790 Rw2G028830 Rw2G028840 Rw2G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	46
AclI	AACGTT	1 cut(s)	416
AcuI	CTGAAG	1 cut(s)	62
AfaI	GTAC	3 cut(s)	188, 281, 293
AgsI	TTSAA	1 cut(s)	331
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	2 cut(s)	460, 501
AluI	AGCT	2 cut(s)	460, 501
Alw21I	GWGCWC	1 cut(s)	462
Alw26I	GTCTC	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	462
BbsI	GAAGAC	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	462
BbvCI	CCTCAGC	1 cut(s)	105
BccI	CCATC	2 cut(s)	305, 430
BciT130I	CCWGG	1 cut(s)	383
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	93
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
Bme1390I	CCNGG	1 cut(s)	383
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	269
BmrFI	CCNGG	1 cut(s)	383
BmrI	ACTGGG	1 cut(s)	216
BmsI	GCATC	2 cut(s)	4, 417
BmuI	ACTGGG	1 cut(s)	216
BpiI	GAAGAC	1 cut(s)	263
Bpu10I	CCTNAGC	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	349
Bse1I	ACTGG	2 cut(s)	85, 211
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	1 cut(s)	349
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	2 cut(s)	85, 211
BseRI	GAGGAG	2 cut(s)	122, 492
BseYI	CCCAGC	1 cut(s)	368
BsiHKAI	GWGCWC	1 cut(s)	462
BsmAI	GTCTC	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp1407I	TGTACA	1 cut(s)	279
BspACI	CCGC	1 cut(s)	46
BspCNI	CTCAG	1 cut(s)	97
BspMAI	CTGCAG	1 cut(s)	97
BsrGI	TGTACA	1 cut(s)	279
BsrI	ACTGG	2 cut(s)	85, 211
BssECI	CCNNGG	1 cut(s)	349
BssT1I	CCWWGG	1 cut(s)	349
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	2 cut(s)	318, 362
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstAUI	TGTACA	1 cut(s)	279
BstDEI	CTNAG	1 cut(s)	105
BstMAI	GTCTC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstNI	CCWGG	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	381
BstSFI	CTRYAG	1 cut(s)	93
BstV2I	GAAGAC	1 cut(s)	263
BstXI	CCANNNNNNTGG	1 cut(s)	386
BtsI	GCAGTG	1 cut(s)	407
BtsIMutI	CAGTG	3 cut(s)	78, 204, 407
Cfr13I	GGNCC	1 cut(s)	269
Csp6I	GTAC	3 cut(s)	187, 280, 292
CviAII	CATG	2 cut(s)	244, 295
CviJI	RGCY	7 cut(s)	127, 158, 368, 378, 386, 460, 501
CviKI_1	RGCY	7 cut(s)	127, 158, 368, 378, 386, 460, 501
CviQI	GTAC	3 cut(s)	187, 280, 292
DdeI	CTNAG	1 cut(s)	105
Ecl136II	GAGCTC	1 cut(s)	460
Eco130I	CCWWGG	1 cut(s)	349
Eco24I	GRGCYC	1 cut(s)	462
Eco32I	GATATC	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	269
Eco53kI	GAGCTC	1 cut(s)	460
Eco57I	CTGAAG	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	460
EcoRII	CCWGG	1 cut(s)	381
EcoRV	GATATC	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	349
FaeI	CATG	2 cut(s)	247, 298
FaiI	YATR	8 cut(s)	9, 21, 168, 175, 177, 245, 262, 296
FatI	CATG	2 cut(s)	243, 294
FauNDI	CATATG	1 cut(s)	175
Fnu4HI	GCNGC	1 cut(s)	47
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	1 cut(s)	47
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	1 cut(s)	47
GsaI	CCCAGC	1 cut(s)	372
Hin1II	CATG	2 cut(s)	247, 298
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HindIII	AAGCTT	1 cut(s)	499
Hpy166II	GTNNAC	3 cut(s)	204, 280, 358
Hpy188I	TCNGA	2 cut(s)	67, 394
Hpy188III	TCNNGA	4 cut(s)	28, 40, 424, 433
Hpy8I	GTNNAC	3 cut(s)	204, 280, 358
HpyCH4III	ACNGT	2 cut(s)	318, 362
HpyCH4IV	ACGT	2 cut(s)	252, 416
HpyCH4V	TGCA	4 cut(s)	78, 95, 173, 412
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	1 cut(s)	105
HpySE526I	ACGT	2 cut(s)	252, 416
Hsp92II	CATG	2 cut(s)	247, 298
LweI	GCATC	2 cut(s)	4, 417
MaeI	CTAG	1 cut(s)	128
MaeII	ACGT	2 cut(s)	252, 416
MboII	GAAGA	3 cut(s)	268, 454, 479
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	1 cut(s)	218
MnlI	CCTC	4 cut(s)	100, 111, 220, 470
MspR9I	CCNGG	1 cut(s)	383
MvaI	CCWGG	1 cut(s)	383
MwoI	GCNNNNNNNGC	1 cut(s)	101
NdeI	CATATG	1 cut(s)	175
NlaIII	CATG	2 cut(s)	247, 298
PkrI	GCNGC	1 cut(s)	48
Psp124BI	GAGCTC	1 cut(s)	462
Psp1406I	AACGTT	1 cut(s)	416
Psp6I	CCWGG	1 cut(s)	381
PspFI	CCCAGC	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	381
PspPI	GGNCC	1 cut(s)	269
PstI	CTGCAG	1 cut(s)	97
RsaI	GTAC	3 cut(s)	188, 281, 293
RsaNI	GTAC	3 cut(s)	187, 280, 292
SacI	GAGCTC	1 cut(s)	462
SatI	GCNGC	1 cut(s)	47
Sau96I	GGNCC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	383
SduI	GDGCHC	1 cut(s)	462
SetI	ASST	5 cut(s)	122, 255, 419, 462, 503
SfaNI	GCATC	2 cut(s)	4, 417
SfcI	CTRYAG	1 cut(s)	93
SinI	GGWCC	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	1 cut(s)	218
SsiI	CCGC	1 cut(s)	46
SspMI	CTAG	1 cut(s)	128
SstI	GAGCTC	1 cut(s)	462
StyD4I	CCNGG	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	349
TaaI	ACNGT	2 cut(s)	318, 362
TaiI	ACGT	2 cut(s)	255, 419
TaqI	TCGA	1 cut(s)	29
TaqII	GACCGA	1 cut(s)	286
TasI	AATT	1 cut(s)	218
TatI	WGTACW	2 cut(s)	279, 291
TauI	GCSGC	1 cut(s)	49
TscAI	CASTG	3 cut(s)	85, 211, 414
TspDTI	ATGAA	2 cut(s)	232, 314
TspRI	CASTG	3 cut(s)	85, 211, 414
VpaK11BI	GGWCC	1 cut(s)	269
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.