Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005571.1

Orthogroup ID

OG0000757

Physical Location & Seq

Genomic Coordinates Forward (+)

45081 .. 45440

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005571.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgatgatagttcagagaggaattctgatcttcccaattgggcctgattctcatttccacggcggagttccggtggtcttccaccgccgacctgtgcctccgattcctctaccgcaccgccctatacccctttatcctcctcaatttcagagccgcgtccatgttttcctcgttgtcggcgccccaatttgtcgtcatggatctgtggagaaagccgatcggttcgaggttcgaagtgtttgtcgctataatttcaaagctgaaattgccataattcagagtctaatcagggccggctaccgatttgctagtttcgacaccgaattccccgggacagtggttaaatccgaaattccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CAF1 RVT_3

Protein Analysis

119

Amino Acids

13.45

Weight (kDa)

10.02

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06450 AT1G27820 AT1G27890 AT1G61470 AT3G44240
fragaria_vesca	FvH4_6g28110 FvH4_6g28140 FvH4_6g29280 FvH4_6g29280
malus_domestica	MD03G1041900.v1.1 MD09G1229300.v1.1 MD11G1042700.v1.1 MD12G1082100.v1.1 MD14G1080800.v1.1
prunus_persica	Prupe.1G188200_v2.0.a1 Prupe.1G190800_v2.0.a1 Prupe.1G190900_v2.0.a1 Prupe.3G105100_v2.0.a1 Prupe.7G010200_v2.0.a1
pyrus_communis	pycom09g14790 pycom14g07010
rosa_chinensis	RchiOBHm_Chr2g0132091 RchiOBHm_Chr2g0132101 RchiOBHm_Chr2g0134441 RchiOBHm_Chr2g0134461 RchiOBHm_Chr2g0136851 RchiOBHm_Chr2g0167821 RchiOBHm_Chr2g0167861 RchiOBHm_Chr2g0167901 RchiOBHm_Chr2g0167921 RchiOBHm_Chr6g0266841
rosa_laevigata	RLG00000019225 RLG00000019226 RLG00000019393
rosa_multiflora	Rmu_sc0001299.1_g000004 Rmu_sc0005571.1_g000018
rosa_roxburghii	Rroxscaffold_2G00110210 Rroxscaffold_2G00110240 Rroxscaffold_2G00112400 Rroxscaffold_3G00239330 Rroxscaffold_4G00313080
rosa_rugosa	Rorug02G0302000 Rorug02G0302200 Rorug02G0317200 Rorug02G0317200 Rorug03G0220600
rosa_samantha	Rh2AG355100 Rh2AG355200 Rh2AG369800 Rh2AG369900 Rh2AG384800 Rh2CG338700 Rh2CG338800 Rh2CG353700 Rh2CG371400 Rh2DG370100 Rh2DG377900 Rh2DG378000 Rh2DG392800 Rh2DG392900 Rh2DG408200 Rh6BG148800 Rh6BG149300 Rh6CG159200 Rh6DG133000 Rh6DG133400
rosa_wichuraiana	Rw1G013790 Rw2G028830 Rw2G028840 Rw2G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AccII	CGCG	1 cut(s)	156
AciI	CCGC	5 cut(s)	63, 85, 113, 118, 154
AclWI	GGATC	1 cut(s)	208
AcsI	RAATTY	3 cut(s)	21, 323, 351
AcyI	GRCGYC	1 cut(s)	180
AgsI	TTSAA	1 cut(s)	256
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
AlwI	GGATC	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	329
AoxI	GGCC	2 cut(s)	41, 291
ApoI	RAATTY	3 cut(s)	21, 323, 351
ArsI	GACNNNNNNTTYG	2 cut(s)	226, 258
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	2 cut(s)	41, 291
AsuC2I	CCSGG	2 cut(s)	330, 331
AsuII	TTCGAA	1 cut(s)	232
AvaI	CYCGRG	1 cut(s)	329
BanI	GGYRCC	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	70
BceAI	ACGGC	1 cut(s)	76
BcnI	CCSGG	2 cut(s)	330, 331
BfaI	CTAG	1 cut(s)	309
BfoI	RGCGCY	1 cut(s)	183
BisI	GCNGC	1 cut(s)	154
BlsI	GCNGC	1 cut(s)	155
Bme1390I	CCNGG	2 cut(s)	330, 331
BmeT110I	CYCGRG	1 cut(s)	329
BmgT120I	GGNCC	2 cut(s)	41, 291
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	2 cut(s)	330, 331
BpiI	GAAGAC	1 cut(s)	70
Bpu14I	TTCGAA	1 cut(s)	232
BpuMI	CCSGG	2 cut(s)	330, 331
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	3 cut(s)	58, 328, 329
BsaWI	WCCGGW	1 cut(s)	70
BsaXI	ACNNNNNCTCC	2 cut(s)	57, 87
Bse118I	RCCGGY	1 cut(s)	293
BseDI	CCNNGG	3 cut(s)	58, 328, 329
BseRI	GAGGAG	1 cut(s)	129
Bsh1236I	CGCG	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	2 cut(s)	43, 293
BshNI	GGYRCC	1 cut(s)	179
BsiEI	CGRYCG	1 cut(s)	220
BsiHKCI	CYCGRG	1 cut(s)	329
BsiSI	CCGG	3 cut(s)	71, 294, 330
BslFI	GGGAC	1 cut(s)	346
BsmFI	GGGAC	1 cut(s)	346
BsnI	GGCC	2 cut(s)	43, 293
BsoBI	CYCGRG	1 cut(s)	329
Bsp119I	TTCGAA	1 cut(s)	232
Bsp143I	GATC	3 cut(s)	27, 200, 217
BspACI	CCGC	5 cut(s)	63, 85, 113, 118, 154
BspANI	GGCC	2 cut(s)	43, 293
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	181
BspPI	GGATC	1 cut(s)	208
BspT104I	TTCGAA	1 cut(s)	232
BspT107I	GGYRCC	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	293
BssAI	RCCGGY	1 cut(s)	293
BssECI	CCNNGG	3 cut(s)	58, 328, 329
BssMI	GATC	3 cut(s)	27, 200, 217
BssNI	GRCGYC	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	337
BstACI	GRCGYC	1 cut(s)	180
BstBI	TTCGAA	1 cut(s)	232
BstC8I	GCNNGC	1 cut(s)	295
BstDSI	CCRYGG	1 cut(s)	58
BstFNI	CGCG	1 cut(s)	156
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	3 cut(s)	30, 203, 220
BstMBI	GATC	3 cut(s)	27, 200, 217
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstSCI	CCNGG	2 cut(s)	328, 329
BstUI	CGCG	1 cut(s)	156
BstV2I	GAAGAC	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	200
BsuRI	GGCC	2 cut(s)	43, 293
BtgI	CCRYGG	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	295
CfoI	GCGC	1 cut(s)	182
Cfr10I	RCCGGY	1 cut(s)	293
Cfr13I	GGNCC	2 cut(s)	41, 291
Cfr9I	CCCGGG	1 cut(s)	329
CseI	GACGC	1 cut(s)	145
CviAII	CATG	2 cut(s)	161, 197
CviJI	RGCY	6 cut(s)	43, 153, 215, 260, 293, 297
CviKI_1	RGCY	6 cut(s)	43, 153, 215, 260, 293, 297
DinI	GGCGCC	1 cut(s)	181
DpnI	GATC	3 cut(s)	29, 202, 219
DpnII	GATC	3 cut(s)	27, 200, 217
EciI	GGCGGA	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	329
EcoRI	GAATTC	2 cut(s)	21, 323
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
FaeI	CATG	2 cut(s)	164, 200
FaiI	YATR	6 cut(s)	125, 162, 198, 249, 272, 358
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	2 cut(s)	160, 196
Fnu4HI	GCNGC	1 cut(s)	154
Fsp4HI	GCNGC	1 cut(s)	154
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	1 cut(s)	154
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	2 cut(s)	43, 293
HapII	CCGG	3 cut(s)	71, 294, 330
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	2 cut(s)	164, 200
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HinfI	GANTC	3 cut(s)	47, 103, 280
HpaII	CCGG	3 cut(s)	71, 294, 330
Hpy188I	TCNGA	6 cut(s)	15, 27, 102, 150, 279, 349
HpyCH4III	ACNGT	1 cut(s)	337
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	2 cut(s)	164, 200
HspAI	GCGC	1 cut(s)	180
KasI	GGCGCC	1 cut(s)	179
KroI	GCCGGC	1 cut(s)	293
KroNI	GCCGGC	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	27, 200, 217
LpnPI	CCDG	6 cut(s)	57, 84, 105, 274, 307, 343
MaeI	CTAG	1 cut(s)	309
MalI	GATC	3 cut(s)	29, 202, 219
MboI	GATC	3 cut(s)	27, 200, 217
MboII	GAAGA	2 cut(s)	22, 70
MfeI	CAATTG	1 cut(s)	36
MflI	RGATCY	1 cut(s)	200
MluCI	AATT	9 cut(s)	21, 36, 143, 186, 250, 264, 273, 323, 351
Mly113I	GGCGCC	1 cut(s)	180
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	7 cut(s)	11, 108, 117, 147, 150, 179, 220
MroNI	GCCGGC	1 cut(s)	293
MseI	TTAA	1 cut(s)	342
MspI	CCGG	3 cut(s)	71, 294, 330
MspR9I	CCNGG	2 cut(s)	330, 331
MunI	CAATTG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	266
NaeI	GCCGGC	1 cut(s)	295
NarI	GGCGCC	1 cut(s)	180
NciI	CCSGG	2 cut(s)	330, 331
NdeII	GATC	3 cut(s)	27, 200, 217
NgoMIV	GCCGGC	1 cut(s)	293
NlaIII	CATG	2 cut(s)	164, 200
NlaIV	GGNNCC	1 cut(s)	181
NspV	TTCGAA	1 cut(s)	232
PdiI	GCCGGC	1 cut(s)	295
PfeI	GAWTC	2 cut(s)	47, 103
PkrI	GCNGC	1 cut(s)	155
Ple19I	CGATCG	1 cut(s)	220
PleI	GAGTC	1 cut(s)	288
PluTI	GGCGCC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	2 cut(s)	41, 291
PsuI	RGATCY	1 cut(s)	200
PvuI	CGATCG	1 cut(s)	220
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	1 cut(s)	154
Sau3AI	GATC	3 cut(s)	27, 200, 217
Sau96I	GGNCC	2 cut(s)	41, 291
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	2 cut(s)	330, 331
SetI	ASST	3 cut(s)	94, 231, 262
SfoI	GGCGCC	1 cut(s)	181
SfuI	TTCGAA	1 cut(s)	232
SmaI	CCCGGG	1 cut(s)	331
Sse9I	AATT	9 cut(s)	21, 36, 143, 186, 250, 264, 273, 323, 351
SsiI	CCGC	5 cut(s)	63, 85, 113, 118, 154
SspDI	GGCGCC	1 cut(s)	179
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	2 cut(s)	328, 329
TaaI	ACNGT	1 cut(s)	337
TaqI	TCGA	3 cut(s)	225, 232, 315
TasI	AATT	9 cut(s)	21, 36, 143, 186, 250, 264, 273, 323, 351
TauI	GCSGC	1 cut(s)	156
TfiI	GAWTC	2 cut(s)	47, 103
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	1 cut(s)	342
TspMI	CCCGGG	1 cut(s)	329
TspRI	CASTG	1 cut(s)	342
XapI	RAATTY	3 cut(s)	21, 323, 351
XmaI	CCCGGG	1 cut(s)	329
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.