Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000757

Physical Location & Seq

Genomic Coordinates Forward (+)

9691628 .. 9692560

Gene Structure 933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G27820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGAAGCAAATTAGTAGCGGTGAAGTTTGGAGATGGAACAAGGAAGTAGAGATGAATTCGATAAGAGATTGTTTGAAACATTGTAGTTCCATCGCTATCGACACAGAGTTTCCCGGATGCTTAAAGGAGACTCCGATGGACGCGAGTGAGGAAATTCGTTACAGAGACATGAAGTTCAATGTGGACAACACCCATCTCATCCAGTTAGGTTTCACGCTATTCGACAGAAGAGGATTCGCTAAAACCTGGGAAATAAACTTGTCAGATTTCGACGAACATAAGTGCTTCAAAAACGATAAGTCCATTGCGTTTCTGAAAAGCAATGGTCTCAATCTGGACAAGATCAGAGAGGAAGGTATTGGAATCGATGAATTCTTTAGAGACTTTTCTCAGATTCTCACGGAGAAGGACGGAAAGATAACTTGGGTGAATTTTCAAGGCTCTTACGACAATGCTTATCTCGTTAAAGGCTTAACGGGAGGGAAACCGTTACCGGAGACTAAGGAAGAGTTTCACGAGACCGTCCAGCAGCTTTTGGGAAAGTTTGTTTTTGACGTAAAGAAAATCGCTGAATCATGCAGCGGACTAAGTAGCCAATTCGGACTACAGAGAATAGCTGATGTGTTGCAGATGAAACGTGTTGGAAAAGCTCATCACGCTGGCTCAGACAGTGAATTGACGGCTCGTGTCTTCACTAAGTTGACTTTCGATTTGCTTAATAGTAGAAAGCAGAGTGTAAGACGAGTTGATCATCAGCAATTTCAACTAGAGCAGCAACAGCATCAGCAGTTTATGATGACTAGATGTTACATCCCGATACCGATGCCGATACCGAGACCGAGACCGGTGATGTTTGCTGCTCATCACCAGAACCCGTATTTTGGTGGTGGTTACTTTAGGATGCCGGTCCAAGGAATGAACTATGTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000288 GO:0000291 GO:0000932 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004535 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017148 GO:0019222 GO:0019439 GO:0030014 GO:0030015 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032991 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CAF1

Protein Analysis

310

Amino Acids

35.92

Weight (kDa)

8.14

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAF1	PF04857	9 - 120	6.1e-13	CAF1 family ribonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06450 AT1G27820 AT1G27890 AT1G61470 AT3G44240
fragaria_vesca	FvH4_6g28110 FvH4_6g28140 FvH4_6g29280 FvH4_6g29280
malus_domestica	MD03G1041900.v1.1 MD09G1229300.v1.1 MD11G1042700.v1.1 MD12G1082100.v1.1 MD14G1080800.v1.1
prunus_persica	Prupe.1G188200_v2.0.a1 Prupe.1G190800_v2.0.a1 Prupe.1G190900_v2.0.a1 Prupe.3G105100_v2.0.a1 Prupe.7G010200_v2.0.a1
pyrus_communis	pycom09g14790 pycom14g07010
rosa_chinensis	RchiOBHm_Chr2g0132091 RchiOBHm_Chr2g0132101 RchiOBHm_Chr2g0134441 RchiOBHm_Chr2g0134461 RchiOBHm_Chr2g0136851 RchiOBHm_Chr2g0167821 RchiOBHm_Chr2g0167861 RchiOBHm_Chr2g0167901 RchiOBHm_Chr2g0167921 RchiOBHm_Chr6g0266841
rosa_laevigata	RLG00000019225 RLG00000019226 RLG00000019393
rosa_multiflora	Rmu_sc0001299.1_g000004 Rmu_sc0005571.1_g000018
rosa_roxburghii	Rroxscaffold_2G00110210 Rroxscaffold_2G00110240 Rroxscaffold_2G00112400 Rroxscaffold_3G00239330 Rroxscaffold_4G00313080
rosa_rugosa	Rorug02G0302000 Rorug02G0302200 Rorug02G0317200 Rorug02G0317200 Rorug03G0220600
rosa_samantha	Rh2AG355100 Rh2AG355200 Rh2AG369800 Rh2AG369900 Rh2AG384800 Rh2CG338700 Rh2CG338800 Rh2CG353700 Rh2CG371400 Rh2DG370100 Rh2DG377900 Rh2DG378000 Rh2DG392800 Rh2DG392900 Rh2DG408200 Rh6BG148800 Rh6BG149300 Rh6CG159200 Rh6DG133000 Rh6DG133400
rosa_wichuraiana	Rw1G013790 Rw2G028830 Rw2G028840 Rw2G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	143
AciI	CCGC	2 cut(s)	18, 582
AcsI	RAATTY	4 cut(s)	55, 153, 371, 430
AfiI	CCNNNNNNNGG	2 cut(s)	881, 911
AflIII	ACRYGT	1 cut(s)	637
AgeI	ACCGGT	1 cut(s)	844
AgsI	TTSAA	5 cut(s)	76, 178, 289, 437, 764
AjnI	CCWGG	1 cut(s)	245
AjuI	GAANNNNNNNTTGG	2 cut(s)	406, 438
AluBI	AGCT	3 cut(s)	532, 617, 650
AluI	AGCT	3 cut(s)	532, 617, 650
Alw26I	GTCTC	8 cut(s)	122, 159, 332, 375, 491, 512, 829, 835
ApeKI	GCWGC	4 cut(s)	529, 579, 772, 857
ApoI	RAATTY	4 cut(s)	55, 153, 371, 430
ArsI	GACNNNNNNTTYG	2 cut(s)	694, 726
AsiGI	ACCGGT	1 cut(s)	844
Asp700I	GAANNNNTTC	1 cut(s)	510
AspS9I	GGNCC	1 cut(s)	907
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	4 cut(s)	32, 439, 857, 859
AvaII	GGWCC	1 cut(s)	907
BauI	CACGAG	2 cut(s)	515, 684
BbsI	GAAGAC	1 cut(s)	682
BbvI	GCAGC	4 cut(s)	541, 591, 784, 844
BccI	CCATC	4 cut(s)	27, 98, 130, 201
BceAI	ACGGC	1 cut(s)	696
BcgI	CGANNNNNNTGC	2 cut(s)	805, 839
BciT130I	CCWGG	1 cut(s)	247
BclI	TGATCA	1 cut(s)	748
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	8 cut(s)	122, 159, 332, 375, 491, 512, 829, 835
BfaI	CTAG	2 cut(s)	767, 801
BfmI	CTRYAG	1 cut(s)	605
BisI	GCNGC	4 cut(s)	530, 580, 773, 858
BlsI	GCNGC	4 cut(s)	531, 581, 774, 859
Bme1390I	CCNGG	2 cut(s)	114, 247
Bme18I	GGWCC	1 cut(s)	907
BmgT120I	GGNCC	1 cut(s)	907
BmrFI	CCNGG	2 cut(s)	114, 247
BmsI	GCATC	4 cut(s)	107, 790, 813, 891
BpiI	GAAGAC	1 cut(s)	682
BpuMI	CCSGG	1 cut(s)	114
Bsa29I	ATCGAT	1 cut(s)	366
BsaI	GGTCTC	4 cut(s)	332, 512, 829, 835
BsaJI	CCNNGG	2 cut(s)	246, 910
BsaWI	WCCGGW	2 cut(s)	493, 844
Bsc4I	CCNNNNNNNGG	2 cut(s)	881, 911
Bse118I	RCCGGY	2 cut(s)	844, 904
Bse1I	ACTGG	1 cut(s)	202
Bse3DI	GCAATG	2 cut(s)	303, 328
BseBI	CCWGG	1 cut(s)	247
BseCI	ATCGAT	1 cut(s)	366
BseDI	CCNNGG	2 cut(s)	246, 910
BseGI	GGATG	4 cut(s)	122, 198, 810, 906
BseLI	CCNNNNNNNGG	2 cut(s)	881, 911
BseMI	GCAATG	2 cut(s)	303, 328
BseMII	CTCAG	2 cut(s)	404, 678
BseNI	ACTGG	1 cut(s)	202
BseXI	GCAGC	4 cut(s)	541, 591, 784, 844
Bsh1236I	CGCG	1 cut(s)	143
BshTI	ACCGGT	1 cut(s)	844
BshVI	ATCGAT	1 cut(s)	366
BsiSI	CCGG	4 cut(s)	114, 494, 845, 905
BslI	CCNNNNNNNGG	2 cut(s)	881, 911
BsmAI	GTCTC	8 cut(s)	122, 159, 332, 375, 491, 512, 829, 835
Bso31I	GGTCTC	4 cut(s)	332, 512, 829, 835
Bsp143I	GATC	2 cut(s)	342, 748
BspACI	CCGC	2 cut(s)	18, 582
BspCNI	CTCAG	2 cut(s)	403, 677
BspDI	ATCGAT	1 cut(s)	366
BspFNI	CGCG	1 cut(s)	143
BspTNI	GGTCTC	4 cut(s)	332, 512, 829, 835
BsrDI	GCAATG	2 cut(s)	303, 328
BsrFI	RCCGGY	2 cut(s)	844, 904
BsrI	ACTGG	1 cut(s)	202
BssAI	RCCGGY	2 cut(s)	844, 904
BssECI	CCNNGG	2 cut(s)	246, 910
BssMI	GATC	2 cut(s)	342, 748
BssSI	CACGAG	2 cut(s)	515, 684
BssT1I	CCWWGG	1 cut(s)	910
Bst2BI	CACGAG	2 cut(s)	515, 684
Bst2UI	CCWGG	1 cut(s)	247
Bst4CI	ACNGT	3 cut(s)	489, 523, 671
Bst6I	CTCTTC	2 cut(s)	223, 501
BstC8I	GCNNGC	1 cut(s)	661
BstDEI	CTNAG	5 cut(s)	390, 501, 587, 664, 696
BstF5I	GGATG	4 cut(s)	122, 198, 810, 906
BstFNI	CGCG	1 cut(s)	143
BstKTI	GATC	2 cut(s)	345, 751
BstMAI	GTCTC	8 cut(s)	122, 159, 332, 375, 491, 512, 829, 835
BstMBI	GATC	2 cut(s)	342, 748
BstMWI	GCNNNNNNNGC	2 cut(s)	656, 778
BstNI	CCWGG	1 cut(s)	247
BstSCI	CCNGG	2 cut(s)	112, 245
BstSFI	CTRYAG	1 cut(s)	605
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	4 cut(s)	541, 591, 784, 844
BstV2I	GAAGAC	1 cut(s)	682
Bsu15I	ATCGAT	1 cut(s)	366
BsuTUI	ATCGAT	1 cut(s)	366
BtgZI	GCGATG	1 cut(s)	76
BtsCI	GGATG	4 cut(s)	122, 198, 810, 906
BtsIMutI	CAGTG	1 cut(s)	676
Cac8I	GCNNGC	1 cut(s)	661
Cfr10I	RCCGGY	2 cut(s)	844, 904
Cfr13I	GGNCC	1 cut(s)	907
ClaI	ATCGAT	1 cut(s)	366
CseI	GACGC	1 cut(s)	149
CspAI	ACCGGT	1 cut(s)	844
CviAII	CATG	2 cut(s)	169, 576
CviJI	RGCY	8 cut(s)	441, 471, 532, 594, 617, 650, 663, 683
CviKI_1	RGCY	8 cut(s)	441, 471, 532, 594, 617, 650, 663, 683
DdeI	CTNAG	5 cut(s)	390, 501, 587, 664, 696
DpnI	GATC	2 cut(s)	344, 750
DpnII	GATC	2 cut(s)	342, 748
Eam1104I	CTCTTC	2 cut(s)	223, 501
EarI	CTCTTC	2 cut(s)	223, 501
Eco130I	CCWWGG	1 cut(s)	910
Eco31I	GGTCTC	4 cut(s)	332, 512, 829, 835
Eco47I	GGWCC	1 cut(s)	907
EcoRI	GAATTC	2 cut(s)	55, 371
EcoRII	CCWGG	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	910
ErhI	CCWWGG	1 cut(s)	910
FaeI	CATG	2 cut(s)	172, 579
FaiI	YATR	5 cut(s)	170, 279, 577, 794, 924
FatI	CATG	2 cut(s)	168, 575
FbaI	TGATCA	1 cut(s)	748
Fnu4HI	GCNGC	4 cut(s)	530, 580, 773, 858
FokI	GGATG	4 cut(s)	129, 185, 797, 913
Fsp4HI	GCNGC	4 cut(s)	530, 580, 773, 858
FspBI	CTAG	2 cut(s)	767, 801
GluI	GCNGC	4 cut(s)	530, 580, 773, 858
HapII	CCGG	4 cut(s)	114, 494, 845, 905
HgaI	GACGC	1 cut(s)	149
Hin1II	CATG	2 cut(s)	172, 579
HincII	GTYRAC	1 cut(s)	702
HindII	GTYRAC	1 cut(s)	702
HinfI	GANTC	5 cut(s)	130, 234, 363, 394, 572
HpaII	CCGG	4 cut(s)	114, 494, 845, 905
HphI	GGTGA	4 cut(s)	32, 439, 857, 859
Hpy166II	GTNNAC	2 cut(s)	184, 702
Hpy188I	TCNGA	7 cut(s)	135, 265, 315, 347, 393, 602, 667
Hpy188III	TCNNGA	3 cut(s)	335, 515, 814
Hpy8I	GTNNAC	2 cut(s)	184, 702
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	2 cut(s)	347, 400
HpyCH4III	ACNGT	3 cut(s)	489, 523, 671
HpyCH4IV	ACGT	2 cut(s)	555, 637
HpyCH4V	TGCA	2 cut(s)	579, 628
HpyF10VI	GCNNNNNNNGC	2 cut(s)	656, 778
HpyF3I	CTNAG	5 cut(s)	390, 501, 587, 664, 696
HpySE526I	ACGT	2 cut(s)	555, 637
Hsp92II	CATG	2 cut(s)	172, 579
Ksp22I	TGATCA	1 cut(s)	748
Kzo9I	GATC	2 cut(s)	342, 748
Lsp1109I	GCAGC	4 cut(s)	541, 591, 784, 844
LweI	GCATC	4 cut(s)	107, 790, 813, 891
MaeI	CTAG	2 cut(s)	767, 801
MaeII	ACGT	2 cut(s)	555, 637
MaeIII	GTNAC	4 cut(s)	158, 489, 806, 890
MalI	GATC	2 cut(s)	344, 750
MboI	GATC	2 cut(s)	342, 748
MboII	GAAGA	3 cut(s)	240, 518, 682
MluCI	AATT	8 cut(s)	9, 55, 153, 371, 430, 596, 674, 758
MlyI	GAGTC	1 cut(s)	124
MmeI	TCCRAC	1 cut(s)	622
MnlI	CCTC	4 cut(s)	142, 224, 343, 473
MroXI	GAANNNNTTC	1 cut(s)	510
MseI	TTAA	4 cut(s)	122, 465, 473, 717
MspA1I	CMGCKG	1 cut(s)	582
MspI	CCGG	4 cut(s)	114, 494, 845, 905
MspR9I	CCNGG	2 cut(s)	114, 247
MvaI	CCWGG	1 cut(s)	247
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	2 cut(s)	656, 778
NciI	CCSGG	1 cut(s)	114
NdeII	GATC	2 cut(s)	342, 748
NlaIII	CATG	2 cut(s)	172, 579
PdmI	GAANNNNTTC	1 cut(s)	510
PfeI	GAWTC	4 cut(s)	234, 363, 394, 572
PfoI	TCCNGGA	1 cut(s)	112
PinAI	ACCGGT	1 cut(s)	844
PkrI	GCNGC	4 cut(s)	531, 581, 774, 859
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	245
PspPI	GGNCC	1 cut(s)	907
SaqAI	TTAA	4 cut(s)	122, 465, 473, 717
SatI	GCNGC	4 cut(s)	530, 580, 773, 858
Sau3AI	GATC	2 cut(s)	342, 748
Sau96I	GGNCC	1 cut(s)	907
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	2 cut(s)	114, 247
SetI	ASST	8 cut(s)	211, 248, 358, 534, 558, 619, 640, 652
SfaNI	GCATC	4 cut(s)	107, 790, 813, 891
SfcI	CTRYAG	1 cut(s)	605
SinI	GGWCC	1 cut(s)	907
Sse9I	AATT	8 cut(s)	9, 55, 153, 371, 430, 596, 674, 758
SsiI	CCGC	2 cut(s)	18, 582
SspMI	CTAG	2 cut(s)	767, 801
StyD4I	CCNGG	2 cut(s)	112, 245
StyI	CCWWGG	1 cut(s)	910
TaaI	ACNGT	3 cut(s)	489, 523, 671
TaiI	ACGT	2 cut(s)	558, 640
TaqI	TCGA	6 cut(s)	59, 99, 222, 270, 366, 708
TaqII	GACCGA	1 cut(s)	853
TasI	AATT	8 cut(s)	9, 55, 153, 371, 430, 596, 674, 758
TfiI	GAWTC	4 cut(s)	234, 363, 394, 572
Tru1I	TTAA	4 cut(s)	122, 465, 473, 717
Tru9I	TTAA	4 cut(s)	122, 465, 473, 717
TscAI	CASTG	1 cut(s)	676
TseI	GCWGC	4 cut(s)	529, 579, 772, 857
TspDTI	ATGAA	6 cut(s)	17, 68, 185, 384, 647, 932
TspGWI	ACGGA	2 cut(s)	416, 426
TspRI	CASTG	1 cut(s)	676
VpaK11BI	GGWCC	1 cut(s)	907
XapI	RAATTY	4 cut(s)	55, 153, 371, 430
XmnI	GAANNNNTTC	1 cut(s)	510
XspI	CTAG	2 cut(s)	767, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.