Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000757

Physical Location & Seq

Genomic Coordinates Reverse (-)

38686439 .. 38690524

Gene Structure 4086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0317200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCCCTTCCCTCAGGACCGCCTGGACCTCCCTCTCGACGCCCTCATCGCCGAATCCAAGCAACAACGCCGTCATAACAGCCACGCTCACCAGCCACGAGGGCATAACGGTCATTTCGGAGGCGGAGGCTCCACCTCAGGCCCCTCTCGTCGGCCGATGAACCGCAACGCCTACAGAACGGCGCCGTATCCCACTCTGCCAGAAATGCAAGGACAGCCTGGACCCAGAAGGATTGAGCTGCCATTGGCTTTGAGCCAAGCGATGAACAGTGAGGGAAGCACCAAGCTTTATATATCTAACTTGGACTATGATGTTACCAATCGAGATATAGAGTTGCTCTTCTCTGAGGTTGGTGAATTGGAAAGGCACTCAATCTATTATGATAAAAGTGGAAGATCTAAGGGAACAGCTGAAGTTGTCTATAAGCACTATTCAGATGCTCTAGCAGCAATCGAGAGATACAACAATCAGCATCTTGATGGAAAGAAAGTGGAAATTAAGCTTGTGGGACTCAATGTTGTTTCTCCTGTTCCTCTGCTTCTGCCTCCAAATACAAATTTCATGCAAGAACATCCAACTCCCGTCTTCCAGAGGCTAGGAAGAGCTGGTTCAAGGGGATCGTTTCATGGTCATGGTGGTGTTGGACTTGAAAGAGGCTGTGGACAGGTGAGAAATGGTGGTCCGAAGGTTACTACAGAATCTCAGCAATGGAAGAATGTGACTGCAGAAAATCAGCAAAGGAAGAATGTGATTACAGAATCTGTTAAAAGGAAGAAAACATTTTATGGAGATACAACTGTGACTTTTGATGATCTGGATGCTGATTTGGAAAAATACCGCCTAAAATGTAGGCCGGTAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CAF1 RVT_3

Protein Analysis

287

Amino Acids

32.13

Weight (kDa)

9.41

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	96 - 164	9.3e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06450 AT1G27820 AT1G27890 AT1G61470 AT3G44240
fragaria_vesca	FvH4_6g28110 FvH4_6g28140 FvH4_6g29280 FvH4_6g29280
malus_domestica	MD03G1041900.v1.1 MD09G1229300.v1.1 MD11G1042700.v1.1 MD12G1082100.v1.1 MD14G1080800.v1.1
prunus_persica	Prupe.1G188200_v2.0.a1 Prupe.1G190800_v2.0.a1 Prupe.1G190900_v2.0.a1 Prupe.3G105100_v2.0.a1 Prupe.7G010200_v2.0.a1
pyrus_communis	pycom09g14790 pycom14g07010
rosa_chinensis	RchiOBHm_Chr2g0132091 RchiOBHm_Chr2g0132101 RchiOBHm_Chr2g0134441 RchiOBHm_Chr2g0134461 RchiOBHm_Chr2g0136851 RchiOBHm_Chr2g0167821 RchiOBHm_Chr2g0167861 RchiOBHm_Chr2g0167901 RchiOBHm_Chr2g0167921 RchiOBHm_Chr6g0266841
rosa_laevigata	RLG00000019225 RLG00000019226 RLG00000019393
rosa_multiflora	Rmu_sc0001299.1_g000004 Rmu_sc0005571.1_g000018
rosa_roxburghii	Rroxscaffold_2G00110210 Rroxscaffold_2G00110240 Rroxscaffold_2G00112400 Rroxscaffold_3G00239330 Rroxscaffold_4G00313080
rosa_rugosa	Rorug02G0302000 Rorug02G0302200 Rorug02G0317200 Rorug02G0317200 Rorug03G0220600
rosa_samantha	Rh2AG355100 Rh2AG355200 Rh2AG369800 Rh2AG369900 Rh2AG384800 Rh2CG338700 Rh2CG338800 Rh2CG353700 Rh2CG371400 Rh2DG370100 Rh2DG377900 Rh2DG378000 Rh2DG392800 Rh2DG392900 Rh2DG408200 Rh6BG148800 Rh6BG149300 Rh6CG159200 Rh6DG133000 Rh6DG133400
rosa_wichuraiana	Rw1G013790 Rw2G028830 Rw2G028840 Rw2G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	181
AciI	CCGC	4 cut(s)	19, 123, 163, 838
AclWI	GGATC	1 cut(s)	625
AcoI	YGGCCR	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	556
AcuI	CTGAAG	1 cut(s)	432
AcyI	GRCGYC	2 cut(s)	39, 182
AfiI	CCNNNNNNNGG	1 cut(s)	150
AgsI	TTSAA	2 cut(s)	612, 650
AjnI	CCWGG	2 cut(s)	21, 217
AluBI	AGCT	5 cut(s)	238, 286, 410, 502, 605
AluI	AGCT	5 cut(s)	238, 286, 410, 502, 605
AlwI	GGATC	1 cut(s)	625
AlwNI	CAGNNNCTG	1 cut(s)	761
AoxI	GGCC	3 cut(s)	139, 152, 851
ApeKI	GCWGC	2 cut(s)	238, 446
ApoI	RAATTY	1 cut(s)	556
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	5 cut(s)	16, 25, 140, 221, 680
AsuHPI	GGTGA	3 cut(s)	80, 365, 679
AvaII	GGWCC	4 cut(s)	16, 25, 221, 680
AxyI	CCTNAGG	2 cut(s)	12, 136
BaeI	ACNNNNGTAYC	2 cut(s)	783, 816
BanI	GGYRCC	1 cut(s)	181
BauI	CACGAG	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	577
BbvI	GCAGC	2 cut(s)	225, 458
BccI	CCATC	1 cut(s)	473
BceAI	ACGGC	3 cut(s)	54, 169, 195
BciT130I	CCWGG	2 cut(s)	23, 219
BciVI	GTATCC	1 cut(s)	198
BfaI	CTAG	2 cut(s)	443, 596
BfmI	CTRYAG	3 cut(s)	172, 693, 723
BfoI	RGCGCY	1 cut(s)	185
BfuI	GTATCC	1 cut(s)	198
BglI	GCCNNNNNGGC	1 cut(s)	100
BglII	AGATCT	1 cut(s)	395
BisI	GCNGC	2 cut(s)	239, 447
BlsI	GCNGC	2 cut(s)	240, 448
Bme1390I	CCNGG	2 cut(s)	23, 219
Bme18I	GGWCC	4 cut(s)	16, 25, 221, 680
BmgT120I	GGNCC	5 cut(s)	16, 25, 140, 221, 680
BmiI	GGNNCC	4 cut(s)	130, 142, 183, 223
BmrFI	CCNGG	2 cut(s)	23, 219
BmsI	GCATC	3 cut(s)	427, 481, 808
BpiI	GAAGAC	1 cut(s)	577
BsaHI	GRCGYC	2 cut(s)	39, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse118I	RCCGGY	1 cut(s)	853
Bse21I	CCTNAGG	2 cut(s)	12, 136
Bse3DI	GCAATG	1 cut(s)	713
BseBI	CCWGG	2 cut(s)	23, 219
BseGI	GGATG	2 cut(s)	571, 823
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMI	GCAATG	1 cut(s)	713
BseMII	CTCAG	4 cut(s)	26, 150, 336, 716
BseX3I	CGGCCG	1 cut(s)	152
BseXI	GCAGC	2 cut(s)	225, 458
Bsh1285I	CGRYCG	1 cut(s)	155
BshFI	GGCC	3 cut(s)	141, 154, 853
BshNI	GGYRCC	1 cut(s)	181
BsiEI	CGRYCG	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	854
BslFI	GGGAC	1 cut(s)	522
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmFI	GGGAC	1 cut(s)	522
BsnI	GGCC	3 cut(s)	141, 154, 853
Bsp143I	GATC	3 cut(s)	395, 617, 811
BspACI	CCGC	4 cut(s)	19, 123, 163, 838
BspANI	GGCC	3 cut(s)	141, 154, 853
BspCNI	CTCAG	4 cut(s)	25, 149, 337, 715
BspLI	GGNNCC	4 cut(s)	130, 142, 183, 223
BspMAI	CTGCAG	1 cut(s)	727
BspPI	GGATC	1 cut(s)	625
BspQI	GCTCTTC	2 cut(s)	344, 595
BspT107I	GGYRCC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	713
BsrFI	RCCGGY	1 cut(s)	853
BssAI	RCCGGY	1 cut(s)	853
BssMI	GATC	3 cut(s)	395, 617, 811
BssNI	GRCGYC	2 cut(s)	39, 182
BssSI	CACGAG	1 cut(s)	96
Bst2BI	CACGAG	1 cut(s)	96
Bst2UI	CCWGG	2 cut(s)	23, 219
Bst4CI	ACNGT	3 cut(s)	110, 269, 799
Bst6I	CTCTTC	2 cut(s)	344, 595
BstACI	GRCGYC	2 cut(s)	39, 182
BstDEI	CTNAG	5 cut(s)	12, 136, 345, 399, 702
BstF5I	GGATG	2 cut(s)	571, 823
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	3 cut(s)	398, 620, 814
BstMBI	GATC	3 cut(s)	395, 617, 811
BstMCI	CGRYCG	1 cut(s)	155
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 100, 205, 214, 446
BstNI	CCWGG	2 cut(s)	23, 219
BstSCI	CCNGG	2 cut(s)	21, 217
BstSFI	CTRYAG	3 cut(s)	172, 693, 723
BstV1I	GCAGC	2 cut(s)	225, 458
BstV2I	GAAGAC	1 cut(s)	577
BstX2I	RGATCY	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	395
BstZI	CGGCCG	1 cut(s)	152
Bsu36I	CCTNAGG	2 cut(s)	12, 136
BsuI	GTATCC	1 cut(s)	198
BsuRI	GGCC	3 cut(s)	141, 154, 853
BtgZI	GCGATG	2 cut(s)	31, 275
BtsCI	GGATG	2 cut(s)	571, 823
BtsIMutI	CAGTG	1 cut(s)	274
CaiI	CAGNNNCTG	1 cut(s)	761
CfoI	GCGC	1 cut(s)	184
Cfr10I	RCCGGY	1 cut(s)	853
Cfr13I	GGNCC	5 cut(s)	16, 25, 140, 221, 680
CseI	GACGC	1 cut(s)	47
CviAII	CATG	3 cut(s)	562, 626, 632
DdeI	CTNAG	5 cut(s)	12, 136, 345, 399, 702
DinI	GGCGCC	1 cut(s)	183
DpnI	GATC	3 cut(s)	397, 619, 813
DpnII	GATC	3 cut(s)	395, 617, 811
EaeI	YGGCCR	1 cut(s)	152
EagI	CGGCCG	1 cut(s)	152
Eam1104I	CTCTTC	2 cut(s)	344, 595
EarI	CTCTTC	2 cut(s)	344, 595
EciI	GGCGGA	1 cut(s)	138
EclXI	CGGCCG	1 cut(s)	152
Eco47I	GGWCC	4 cut(s)	16, 25, 221, 680
Eco52I	CGGCCG	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	432
Eco81I	CCTNAGG	2 cut(s)	12, 136
EcoO109I	RGGNCCY	1 cut(s)	140
EcoRII	CCWGG	2 cut(s)	21, 217
EgeI	GGCGCC	1 cut(s)	183
EheI	GGCGCC	1 cut(s)	183
FaeI	CATG	3 cut(s)	565, 629, 635
FaqI	GGGAC	1 cut(s)	522
FatI	CATG	3 cut(s)	561, 625, 631
Fnu4HI	GCNGC	2 cut(s)	239, 447
FokI	GGATG	2 cut(s)	558, 830
Fsp4HI	GCNGC	2 cut(s)	239, 447
FspBI	CTAG	2 cut(s)	443, 596
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	2 cut(s)	239, 447
HaeII	RGCGCY	1 cut(s)	185
HaeIII	GGCC	3 cut(s)	141, 154, 853
HapII	CCGG	1 cut(s)	854
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	1 cut(s)	184
Hin1I	GRCGYC	2 cut(s)	39, 182
Hin1II	CATG	3 cut(s)	565, 629, 635
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HindIII	AAGCTT	2 cut(s)	284, 500
HinfI	GANTC	4 cut(s)	53, 510, 698, 758
HpaII	CCGG	1 cut(s)	854
HphI	GGTGA	3 cut(s)	80, 365, 679
Hpy166II	GTNNAC	2 cut(s)	662, 859
Hpy188I	TCNGA	4 cut(s)	119, 346, 436, 684
Hpy188III	TCNNGA	7 cut(s)	14, 35, 323, 454, 476, 589, 815
Hpy8I	GTNNAC	2 cut(s)	662, 859
Hpy99I	CGWCG	2 cut(s)	41, 153
HpyAV	CCTTC	3 cut(s)	16, 222, 679
HpyCH4III	ACNGT	3 cut(s)	110, 269, 799
HpyCH4V	TGCA	3 cut(s)	208, 565, 725
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 100, 205, 214, 446
HpyF3I	CTNAG	5 cut(s)	12, 136, 345, 399, 702
Hsp92I	GRCGYC	2 cut(s)	39, 182
Hsp92II	CATG	3 cut(s)	565, 629, 635
HspAI	GCGC	1 cut(s)	182
KasI	GGCGCC	1 cut(s)	181
Kzo9I	GATC	3 cut(s)	395, 617, 811
LguI	GCTCTTC	2 cut(s)	344, 595
LmnI	GCTCC	1 cut(s)	134
Lsp1109I	GCAGC	2 cut(s)	225, 458
LweI	GCATC	3 cut(s)	427, 481, 808
MaeI	CTAG	2 cut(s)	443, 596
MaeIII	GTNAC	4 cut(s)	313, 688, 718, 799
MalI	GATC	3 cut(s)	397, 619, 813
MboI	GATC	3 cut(s)	395, 617, 811
MboII	GAAGA	7 cut(s)	331, 405, 577, 612, 724, 754, 784
MflI	RGATCY	1 cut(s)	395
MluCI	AATT	3 cut(s)	356, 495, 556
Mly113I	GGCGCC	1 cut(s)	182
MlyI	GAGTC	1 cut(s)	504
MmeI	TCCRAC	2 cut(s)	599, 622
MseI	TTAA	2 cut(s)	498, 765
MslI	CAYNNNNRTG	3 cut(s)	477, 630, 636
MspA1I	CMGCKG	1 cut(s)	410
MspI	CCGG	1 cut(s)	854
MspR9I	CCNGG	2 cut(s)	23, 219
MvaI	CCWGG	2 cut(s)	23, 219
MwoI	GCNNNNNNNGC	5 cut(s)	47, 100, 205, 214, 446
NarI	GGCGCC	1 cut(s)	182
NdeII	GATC	3 cut(s)	395, 617, 811
NlaIII	CATG	3 cut(s)	565, 629, 635
NlaIV	GGNNCC	4 cut(s)	130, 142, 183, 223
NmuCI	GTSAC	2 cut(s)	718, 799
PciSI	GCTCTTC	2 cut(s)	344, 595
PfeI	GAWTC	3 cut(s)	53, 698, 758
PkrI	GCNGC	2 cut(s)	240, 448
PleI	GAGTC	1 cut(s)	504
PluTI	GGCGCC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	504
Psp6I	CCWGG	2 cut(s)	21, 217
PspGI	CCWGG	2 cut(s)	21, 217
PspN4I	GGNNCC	4 cut(s)	130, 142, 183, 223
PspPI	GGNCC	5 cut(s)	16, 25, 140, 221, 680
PstI	CTGCAG	1 cut(s)	727
PstNI	CAGNNNCTG	1 cut(s)	761
PsuI	RGATCY	1 cut(s)	395
PvuII	CAGCTG	1 cut(s)	410
RseI	CAYNNNNRTG	3 cut(s)	477, 630, 636
SapI	GCTCTTC	2 cut(s)	344, 595
SaqAI	TTAA	2 cut(s)	498, 765
SatI	GCNGC	2 cut(s)	239, 447
Sau3AI	GATC	3 cut(s)	395, 617, 811
Sau96I	GGNCC	5 cut(s)	16, 25, 140, 221, 680
SchI	GAGTC	1 cut(s)	504
ScrFI	CCNGG	2 cut(s)	23, 219
SfaNI	GCATC	3 cut(s)	427, 481, 808
SfcI	CTRYAG	3 cut(s)	172, 693, 723
SfoI	GGCGCC	1 cut(s)	183
SinI	GGWCC	4 cut(s)	16, 25, 221, 680
SmiMI	CAYNNNNRTG	3 cut(s)	477, 630, 636
Sse9I	AATT	3 cut(s)	356, 495, 556
SsiI	CCGC	4 cut(s)	19, 123, 163, 838
SspDI	GGCGCC	1 cut(s)	181
SspMI	CTAG	2 cut(s)	443, 596
StyD4I	CCNGG	2 cut(s)	21, 217
TaaI	ACNGT	3 cut(s)	110, 269, 799
TaqI	TCGA	3 cut(s)	36, 322, 453
TasI	AATT	3 cut(s)	356, 495, 556
TfiI	GAWTC	3 cut(s)	53, 698, 758
Tru1I	TTAA	2 cut(s)	498, 765
Tru9I	TTAA	2 cut(s)	498, 765
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	2 cut(s)	718, 799
TseI	GCWGC	2 cut(s)	238, 446
Tsp45I	GTSAC	2 cut(s)	718, 799
TspDTI	ATGAA	4 cut(s)	173, 278, 550, 614
TspRI	CASTG	1 cut(s)	274
VpaK11BI	GGWCC	4 cut(s)	16, 25, 221, 680
XapI	RAATTY	1 cut(s)	556
XspI	CTAG	2 cut(s)	443, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.