Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000757

Physical Location & Seq

Genomic Coordinates Reverse (-)

9714136 .. 9715176

Gene Structure 1041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G27890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGGTGAAGTTTGGAGATGGAACAAGGAAGTAGAGATGGATTCGATAAGAGATTGTTTGAAACATTTTAGTTCCATCGCTATCGACACAGAGTTTCCCGGATGCTTAAAGGAGACTCCGATGGACGCGAGTGAGGAAATTCGTTACAGAGACATGAAGTTCAATGTGGACAACACCCATCTCATCCAGTTAGGTTTCACGCTATTCGACAGAAGAGGAATCACTAAAACCTGGGAAATAAACTTGTCAGATTTCAACGAACATAAGTGCTTCAAAAACGATAAGTCCATAGCTTTTCTCAAAAGCAATGGTCTCAATCTGGACAAGATCGGAGAGGAAGGTATTGGAATCGAAGAATTCTTTAGAGACTTTTCTCAGATTCTCAAGGAGAAGGACGGAAAGATAACTTGGGTGAATTTTCAAGGCTCTTACGACAATGCTTATCTCGTTAAAGGCTTAACGGGAGGGAAACCGTTACCGGAGACTAAGGAAGAGTTTCACGAGACCGTCGAGCAGCTTTTGGGAAAGTTTGTTTTTGACGTAAAGAAAATCGCTGAATCATGCAGCGGACTAAGTAGCCGATTCGGACTACAGAGAATAGCTGATGTGTTGCAGATGAAACGTGTTGGAAAAGCTCATCACGCTGGCTCAGACAGTGAATTGACGGCTCGTGTCTTCACTAAGTTGACTTTCGATTTGCTCAATAGTAGAAAGCAGTGTGTAAGACGAGTTGATCATCAGCAATATCAACTAGAGCAGCAGCAGCTTATGATGACTAGATGTTACATCCCAATACCGATACCTATACCGAGACCGAGATCGGTGATGTTTGCTGCTCATCACCCGAACCCGTATTTTGGTGGTGGTTACTTTGGGATGCCGGTCCAAGGAAGGAACTACGTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000288 GO:0000291 GO:0000932 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004535 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017148 GO:0019222 GO:0019439 GO:0030014 GO:0030015 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032991 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CAF1

Protein Analysis

302

Amino Acids

34.86

Weight (kDa)

7.65

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAF1	PF04857	4 - 115	2.5e-11	CAF1 family ribonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06450 AT1G27820 AT1G27890 AT1G61470 AT3G44240
fragaria_vesca	FvH4_6g28110 FvH4_6g28140 FvH4_6g29280 FvH4_6g29280
malus_domestica	MD03G1041900.v1.1 MD09G1229300.v1.1 MD11G1042700.v1.1 MD12G1082100.v1.1 MD14G1080800.v1.1
prunus_persica	Prupe.1G188200_v2.0.a1 Prupe.1G190800_v2.0.a1 Prupe.1G190900_v2.0.a1 Prupe.3G105100_v2.0.a1 Prupe.7G010200_v2.0.a1
pyrus_communis	pycom09g14790 pycom14g07010
rosa_chinensis	RchiOBHm_Chr2g0132091 RchiOBHm_Chr2g0132101 RchiOBHm_Chr2g0134441 RchiOBHm_Chr2g0134461 RchiOBHm_Chr2g0136851 RchiOBHm_Chr2g0167821 RchiOBHm_Chr2g0167861 RchiOBHm_Chr2g0167901 RchiOBHm_Chr2g0167921 RchiOBHm_Chr6g0266841
rosa_laevigata	RLG00000019225 RLG00000019226 RLG00000019393
rosa_multiflora	Rmu_sc0001299.1_g000004 Rmu_sc0005571.1_g000018
rosa_roxburghii	Rroxscaffold_2G00110210 Rroxscaffold_2G00110240 Rroxscaffold_2G00112400 Rroxscaffold_3G00239330 Rroxscaffold_4G00313080
rosa_rugosa	Rorug02G0302000 Rorug02G0302200 Rorug02G0317200 Rorug02G0317200 Rorug03G0220600
rosa_samantha	Rh2AG355100 Rh2AG355200 Rh2AG369800 Rh2AG369900 Rh2AG384800 Rh2CG338700 Rh2CG338800 Rh2CG353700 Rh2CG371400 Rh2DG370100 Rh2DG377900 Rh2DG378000 Rh2DG392800 Rh2DG392900 Rh2DG408200 Rh6BG148800 Rh6BG149300 Rh6CG159200 Rh6DG133000 Rh6DG133400
rosa_wichuraiana	Rw1G013790 Rw2G028830 Rw2G028840 Rw2G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	128
AciI	CCGC	1 cut(s)	567
AcsI	RAATTY	3 cut(s)	138, 356, 415
AfiI	CCNNNNNNNGG	2 cut(s)	857, 887
AflIII	ACRYGT	1 cut(s)	622
AgsI	TTSAA	5 cut(s)	61, 163, 256, 274, 422
AjnI	CCWGG	1 cut(s)	230
AjuI	GAANNNNNNNTTGG	2 cut(s)	391, 423
AluBI	AGCT	5 cut(s)	293, 517, 602, 635, 766
AluI	AGCT	5 cut(s)	293, 517, 602, 635, 766
Alw26I	GTCTC	7 cut(s)	107, 144, 317, 360, 476, 497, 805
ApeKI	GCWGC	6 cut(s)	514, 564, 757, 760, 763, 833
ApoI	RAATTY	3 cut(s)	138, 356, 415
ArsI	GACNNNNNNTTYG	2 cut(s)	679, 711
Asp700I	GAANNNNTTC	1 cut(s)	495
AspS9I	GGNCC	1 cut(s)	883
AsuC2I	CCSGG	1 cut(s)	99
AsuHPI	GGTGA	4 cut(s)	17, 424, 833, 835
AvaII	GGWCC	1 cut(s)	883
BauI	CACGAG	2 cut(s)	500, 669
BbsI	GAAGAC	1 cut(s)	667
BbvI	GCAGC	6 cut(s)	526, 576, 769, 772, 775, 820
BccI	CCATC	5 cut(s)	12, 31, 83, 115, 186
BceAI	ACGGC	1 cut(s)	681
BciT130I	CCWGG	1 cut(s)	232
BclI	TGATCA	1 cut(s)	733
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	7 cut(s)	107, 144, 317, 360, 476, 497, 805
BfaI	CTAG	2 cut(s)	752, 777
BfmI	CTRYAG	1 cut(s)	590
BisI	GCNGC	6 cut(s)	515, 565, 758, 761, 764, 834
BlsI	GCNGC	6 cut(s)	516, 566, 759, 762, 765, 835
Bme1390I	CCNGG	2 cut(s)	99, 232
Bme18I	GGWCC	1 cut(s)	883
BmgT120I	GGNCC	1 cut(s)	883
BmrFI	CCNGG	2 cut(s)	99, 232
BmsI	GCATC	2 cut(s)	92, 867
BpiI	GAAGAC	1 cut(s)	667
BpuEI	CTTGAG	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	99
BsaI	GGTCTC	3 cut(s)	317, 497, 805
BsaJI	CCNNGG	2 cut(s)	231, 886
BsaWI	WCCGGW	1 cut(s)	478
Bsc4I	CCNNNNNNNGG	2 cut(s)	857, 887
Bse118I	RCCGGY	1 cut(s)	880
Bse1I	ACTGG	1 cut(s)	187
Bse3DI	GCAATG	1 cut(s)	313
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	2 cut(s)	231, 886
BseGI	GGATG	4 cut(s)	107, 183, 786, 882
BseLI	CCNNNNNNNGG	2 cut(s)	857, 887
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	2 cut(s)	389, 663
BseNI	ACTGG	1 cut(s)	187
BseXI	GCAGC	6 cut(s)	526, 576, 769, 772, 775, 820
Bsh1236I	CGCG	1 cut(s)	128
BsiSI	CCGG	3 cut(s)	99, 479, 881
BslI	CCNNNNNNNGG	2 cut(s)	857, 887
BsmAI	GTCTC	7 cut(s)	107, 144, 317, 360, 476, 497, 805
Bso31I	GGTCTC	3 cut(s)	317, 497, 805
Bsp143I	GATC	3 cut(s)	327, 733, 818
BspACI	CCGC	1 cut(s)	567
BspCNI	CTCAG	2 cut(s)	388, 662
BspFNI	CGCG	1 cut(s)	128
BspTNI	GGTCTC	3 cut(s)	317, 497, 805
BsrDI	GCAATG	1 cut(s)	313
BsrFI	RCCGGY	1 cut(s)	880
BsrI	ACTGG	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	880
BssECI	CCNNGG	2 cut(s)	231, 886
BssMI	GATC	3 cut(s)	327, 733, 818
BssSI	CACGAG	2 cut(s)	500, 669
BssT1I	CCWWGG	1 cut(s)	886
Bst2BI	CACGAG	2 cut(s)	500, 669
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	3 cut(s)	474, 508, 656
Bst6I	CTCTTC	2 cut(s)	208, 486
BstC8I	GCNNGC	1 cut(s)	646
BstDEI	CTNAG	5 cut(s)	375, 486, 572, 649, 681
BstF5I	GGATG	4 cut(s)	107, 183, 786, 882
BstFNI	CGCG	1 cut(s)	128
BstKTI	GATC	3 cut(s)	330, 736, 821
BstMAI	GTCTC	7 cut(s)	107, 144, 317, 360, 476, 497, 805
BstMBI	GATC	3 cut(s)	327, 733, 818
BstMWI	GCNNNNNNNGC	2 cut(s)	641, 763
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	2 cut(s)	97, 230
BstSFI	CTRYAG	1 cut(s)	590
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	6 cut(s)	526, 576, 769, 772, 775, 820
BstV2I	GAAGAC	1 cut(s)	667
BtgZI	GCGATG	1 cut(s)	61
BtsCI	GGATG	4 cut(s)	107, 183, 786, 882
BtsI	GCAGTG	1 cut(s)	722
BtsIMutI	CAGTG	2 cut(s)	661, 722
Cac8I	GCNNGC	1 cut(s)	646
Cfr10I	RCCGGY	1 cut(s)	880
Cfr13I	GGNCC	1 cut(s)	883
CseI	GACGC	1 cut(s)	134
CviAII	CATG	2 cut(s)	154, 561
DdeI	CTNAG	5 cut(s)	375, 486, 572, 649, 681
DpnI	GATC	3 cut(s)	329, 735, 820
DpnII	GATC	3 cut(s)	327, 733, 818
Eam1104I	CTCTTC	2 cut(s)	208, 486
EarI	CTCTTC	2 cut(s)	208, 486
Eco130I	CCWWGG	1 cut(s)	886
Eco31I	GGTCTC	3 cut(s)	317, 497, 805
Eco47I	GGWCC	1 cut(s)	883
EcoRI	GAATTC	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	886
ErhI	CCWWGG	1 cut(s)	886
FaeI	CATG	2 cut(s)	157, 564
FaiI	YATR	6 cut(s)	155, 264, 290, 562, 770, 806
FatI	CATG	2 cut(s)	153, 560
FbaI	TGATCA	1 cut(s)	733
Fnu4HI	GCNGC	6 cut(s)	515, 565, 758, 761, 764, 834
FokI	GGATG	4 cut(s)	114, 170, 773, 889
Fsp4HI	GCNGC	6 cut(s)	515, 565, 758, 761, 764, 834
FspBI	CTAG	2 cut(s)	752, 777
GluI	GCNGC	6 cut(s)	515, 565, 758, 761, 764, 834
HapII	CCGG	3 cut(s)	99, 479, 881
HgaI	GACGC	1 cut(s)	134
Hin1II	CATG	2 cut(s)	157, 564
HincII	GTYRAC	1 cut(s)	687
HindII	GTYRAC	1 cut(s)	687
HinfI	GANTC	7 cut(s)	41, 115, 219, 348, 379, 557, 582
HpaII	CCGG	3 cut(s)	99, 479, 881
HphI	GGTGA	4 cut(s)	17, 424, 833, 835
Hpy166II	GTNNAC	2 cut(s)	169, 687
Hpy188I	TCNGA	6 cut(s)	120, 250, 332, 378, 587, 652
Hpy188III	TCNNGA	2 cut(s)	320, 500
Hpy8I	GTNNAC	2 cut(s)	169, 687
Hpy99I	CGWCG	1 cut(s)	512
HpyAV	CCTTC	3 cut(s)	332, 385, 885
HpyCH4III	ACNGT	3 cut(s)	474, 508, 656
HpyCH4IV	ACGT	3 cut(s)	540, 622, 900
HpyCH4V	TGCA	2 cut(s)	564, 613
HpyF10VI	GCNNNNNNNGC	2 cut(s)	641, 763
HpyF3I	CTNAG	5 cut(s)	375, 486, 572, 649, 681
HpySE526I	ACGT	3 cut(s)	540, 622, 900
Hsp92II	CATG	2 cut(s)	157, 564
Ksp22I	TGATCA	1 cut(s)	733
Kzo9I	GATC	3 cut(s)	327, 733, 818
LpnPI	CCDG	8 cut(s)	112, 200, 217, 244, 305, 492, 630, 894
Lsp1109I	GCAGC	6 cut(s)	526, 576, 769, 772, 775, 820
LweI	GCATC	2 cut(s)	92, 867
MaeI	CTAG	2 cut(s)	752, 777
MaeII	ACGT	3 cut(s)	540, 622, 900
MaeIII	GTNAC	4 cut(s)	143, 474, 782, 866
MalI	GATC	3 cut(s)	329, 735, 820
MboI	GATC	3 cut(s)	327, 733, 818
MboII	GAAGA	4 cut(s)	225, 365, 503, 667
MluCI	AATT	4 cut(s)	138, 356, 415, 659
MlyI	GAGTC	1 cut(s)	109
MmeI	TCCRAC	1 cut(s)	607
MnlI	CCTC	4 cut(s)	127, 209, 328, 458
MroXI	GAANNNNTTC	1 cut(s)	495
MseI	TTAA	3 cut(s)	107, 450, 458
MspA1I	CMGCKG	1 cut(s)	567
MspI	CCGG	3 cut(s)	99, 479, 881
MspR9I	CCNGG	2 cut(s)	99, 232
MvaI	CCWGG	1 cut(s)	232
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	641, 763
NciI	CCSGG	1 cut(s)	99
NdeII	GATC	3 cut(s)	327, 733, 818
NlaIII	CATG	2 cut(s)	157, 564
PcsI	WCGNNNNNNNCGW	1 cut(s)	507
PdmI	GAANNNNTTC	1 cut(s)	495
PfeI	GAWTC	6 cut(s)	41, 219, 348, 379, 557, 582
PfoI	TCCNGGA	1 cut(s)	97
PkrI	GCNGC	6 cut(s)	516, 566, 759, 762, 765, 835
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PspPI	GGNCC	1 cut(s)	883
SaqAI	TTAA	3 cut(s)	107, 450, 458
SatI	GCNGC	6 cut(s)	515, 565, 758, 761, 764, 834
Sau3AI	GATC	3 cut(s)	327, 733, 818
Sau96I	GGNCC	1 cut(s)	883
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	2 cut(s)	99, 232
SfaNI	GCATC	2 cut(s)	92, 867
SfcI	CTRYAG	1 cut(s)	590
SinI	GGWCC	1 cut(s)	883
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	4 cut(s)	138, 356, 415, 659
SsiI	CCGC	1 cut(s)	567
SspMI	CTAG	2 cut(s)	752, 777
StyD4I	CCNGG	2 cut(s)	97, 230
StyI	CCWWGG	1 cut(s)	886
TaaI	ACNGT	3 cut(s)	474, 508, 656
TaiI	ACGT	3 cut(s)	543, 625, 903
TaqI	TCGA	6 cut(s)	44, 84, 207, 351, 510, 693
TaqII	GACCGA	1 cut(s)	829
TasI	AATT	4 cut(s)	138, 356, 415, 659
TfiI	GAWTC	6 cut(s)	41, 219, 348, 379, 557, 582
Tru1I	TTAA	3 cut(s)	107, 450, 458
Tru9I	TTAA	3 cut(s)	107, 450, 458
TscAI	CASTG	2 cut(s)	661, 722
TseI	GCWGC	6 cut(s)	514, 564, 757, 760, 763, 833
TspDTI	ATGAA	2 cut(s)	170, 632
TspGWI	ACGGA	1 cut(s)	411
TspRI	CASTG	2 cut(s)	661, 722
VpaK11BI	GGWCC	1 cut(s)	883
XapI	RAATTY	3 cut(s)	138, 356, 415
XmnI	GAANNNNTTC	1 cut(s)	495
XspI	CTAG	2 cut(s)	752, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.