Rh2CG338800

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000757
Physical Location & Seq
Forward (+)
45074805 .. 45075953
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG338800.1

Sequence Viewer

Length: 1116 bp
ATGATGCAAGCAGCTACTGTAGGTATACCATATCCGCCGATTTATCATCATTATCCTTACCTACTTCAGCCAATTGCCGCTTCGGACTGCTTATATCCTATGCAGAACCATCTGGTGCCCAATCCCCACCCTATTATACTTCCAATCCCTGGCATAATCAATCGGGTTTGGCACAAGACTTTGGAGTCTGAGTTTAAGAAAATCCGGAACTTACTCTTTTGGCCCGGTGAGCCCCATACGCATGACCGCTGCTTTCTTGCTTCTATAGACACCGAATTCCCCGGTCAACTTTCTGAATCAGACAAAGGCCGTCTCCGAGAGCCACAGTACAATTATGAGATGATGAAGAACAATGTGAACTCCACCAACATAATCCAATTGGGTTTGACTCTCTCGGACAGATTCGGAAACTTCTACGTATGGGAGTTCAATTTCAGTGACTTTGATATCGAAAGTGATAATCAAAACAAGGTCTCAATTGAGTTGCTCAAGACTCATGGGACCGATTTCCAGAGAAACAAGAAGGATGGTATTCCTTCCTCTAAGTTCGCAGAGTTGTGTCGGGGCTCTGGCCTGGTAGGAAACAGTTCAGAGGTACATTTGACATGGGTGGGTTTCCAGAGTTCTTATGATTTTGGCTTCTTCACCAAGATTCTCAGTGGGCAAAAGTTGCCAGACAACATGCATGGATTCATGAGAAATGTGAAGAACTACTTTGGGCCTAGCGTGTTTGACATGAAACACATGATCACGAGGTTCTGTTCCGGAGTTTATGGGGGTTTGGAGAAGGTGGCAGAGACGCTCGGGGTTGCTCGGGCAGCCGGGAAGAGTCACATGGCTGGTTCTGACAGTCTTTTGACATTGCAAACCTTTCTCAAGCTTATAAATGTGTGTTTGAAGCCAGCAGATTCTAACAGCAGCAGCATTGAGACATTGCAGAAGTTTACAATGAATATGAGTTTTGTGAATTCTTTTGTGAGTTCCCGCGCTCCCTGTGATACCGGTTTGGCAATGCAGGTCTTTAAGATGCTTATAAGACTCGAGGAAGAAAGAGAGAAACAGAACTACTTTAAATTGTATAGTTGTCAAGGGGCTTTGTATAGTTTAGCAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CAF1

Protein Analysis

371

Amino Acids

42.08

Weight (kDa)

7.65

Isoelectric Point (pI)

37.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAF1 PF04857 84 - 179 1.5e-09 CAF1 family ribonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 884, 1034
AasI GACNNNNNNGTC 1 cut(s) 184
Acc36I ACCTGC 1 cut(s) 1006
AccB1I GGYRCC 1 cut(s) 115
AccB7I CCANNNNNTGG 1 cut(s) 149
AccI GTMKAC 1 cut(s) 25
AccII CGCG 1 cut(s) 987
AccIII TCCGGA 2 cut(s) 204, 764
AciI CCGC 4 cut(s) 35, 78, 247, 985
AcsI RAATTY 2 cut(s) 275, 967
AcuI CTGAAG 1 cut(s) 50
AfaI GTAC 2 cut(s) 329, 597
AfiI CCNNNNNNNGG 1 cut(s) 149
AgeI ACCGGT 1 cut(s) 1001
AgsI TTSAA 2 cut(s) 430, 898
AjnI CCWGG 2 cut(s) 148, 573
AjuI GAANNNNNNNTTGG 2 cut(s) 64, 96
AluBI AGCT 2 cut(s) 14, 880
AluI AGCT 2 cut(s) 14, 880
Alw26I GTCTC 4 cut(s) 317, 478, 791, 923
AlwNI CAGNNNCTG 1 cut(s) 17
Ama87I CYCGRG 3 cut(s) 803, 813, 1040
Aor13HI TCCGGA 2 cut(s) 204, 764
AoxI GGCC 4 cut(s) 221, 307, 571, 719
ApeKI GCWGC 5 cut(s) 11, 249, 818, 918, 921
ApoI RAATTY 2 cut(s) 275, 967
AsiGI ACCGGT 1 cut(s) 1001
Asp700I GAANNNNTTC 1 cut(s) 586
AspLEI GCGC 1 cut(s) 989
AspS9I GGNCC 3 cut(s) 222, 501, 719
AsuC2I CCSGG 3 cut(s) 225, 282, 823
AsuHPI GGTGA 2 cut(s) 239, 637
AvaI CYCGRG 3 cut(s) 803, 813, 1040
AvaII GGWCC 1 cut(s) 501
BaeGI GKGCMC 1 cut(s) 120
BanI GGYRCC 1 cut(s) 115
BanII GRGCYC 2 cut(s) 234, 569
BauI CACGAG 1 cut(s) 751
BbvI GCAGC 5 cut(s) 23, 236, 830, 930, 933
BccI CCATC 2 cut(s) 117, 521
BceAI ACGGC 1 cut(s) 294
BciT130I CCWGG 2 cut(s) 150, 575
BclI TGATCA 1 cut(s) 747
BcnI CCSGG 3 cut(s) 225, 282, 823
BcoDI GTCTC 4 cut(s) 317, 478, 791, 923
BfaI CTAG 1 cut(s) 723
BfmI CTRYAG 2 cut(s) 18, 264
BfuAI ACCTGC 1 cut(s) 1006
BisI GCNGC 6 cut(s) 12, 78, 250, 819, 919, 922
BlsI GCNGC 6 cut(s) 13, 79, 251, 820, 920, 923
Bme1390I CCNGG 5 cut(s) 150, 225, 282, 575, 823
Bme18I GGWCC 1 cut(s) 501
BmeT110I CYCGRG 3 cut(s) 803, 813, 1040
BmgT120I GGNCC 3 cut(s) 222, 501, 719
BmiI GGNNCC 2 cut(s) 117, 502
BmrFI CCNGG 5 cut(s) 150, 225, 282, 575, 823
BmsI GCATC 1 cut(s) 1017
BpuEI CTTGAG 2 cut(s) 473, 860
BpuMI CCSGG 3 cut(s) 225, 282, 823
BsaAI YACGTR 1 cut(s) 418
BsaI GGTCTC 1 cut(s) 478
BsaJI CCNNGG 2 cut(s) 148, 280
BsaWI WCCGGW 3 cut(s) 204, 764, 1001
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse118I RCCGGY 1 cut(s) 1001
Bse3DI GCAATG 3 cut(s) 860, 932, 1017
BseAI TCCGGA 2 cut(s) 204, 764
BseBI CCWGG 2 cut(s) 150, 575
BseDI CCNNGG 2 cut(s) 148, 280
BseGI GGATG 1 cut(s) 532
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMI GCAATG 3 cut(s) 860, 932, 1017
BseMII CTCAG 2 cut(s) 180, 670
BseSI GKGCMC 1 cut(s) 120
BseXI GCAGC 5 cut(s) 23, 236, 830, 930, 933
Bsh1236I CGCG 1 cut(s) 987
BshFI GGCC 4 cut(s) 223, 309, 573, 721
BshNI GGYRCC 1 cut(s) 115
BshTI ACCGGT 1 cut(s) 1001
BsiHKCI CYCGRG 3 cut(s) 803, 813, 1040
BsiSI CCGG 6 cut(s) 205, 225, 282, 765, 822, 1002
BslFI GGGAC 1 cut(s) 514
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 4 cut(s) 317, 478, 791, 923
BsmBI CGTCTC 2 cut(s) 317, 791
BsmFI GGGAC 1 cut(s) 514
BsnI GGCC 4 cut(s) 223, 309, 573, 721
Bso31I GGTCTC 1 cut(s) 478
BsoBI CYCGRG 3 cut(s) 803, 813, 1040
Bsp1286I GDGCHC 3 cut(s) 120, 234, 569
Bsp13I TCCGGA 2 cut(s) 204, 764
Bsp143I GATC 1 cut(s) 747
BspACI CCGC 4 cut(s) 35, 78, 247, 985
BspANI GGCC 4 cut(s) 223, 309, 573, 721
BspCNI CTCAG 2 cut(s) 181, 669
BspEI TCCGGA 2 cut(s) 204, 764
BspFNI CGCG 1 cut(s) 987
BspHI TCATGA 1 cut(s) 693
BspLI GGNNCC 2 cut(s) 117, 502
BspMI ACCTGC 1 cut(s) 1006
BspT107I GGYRCC 1 cut(s) 115
BspTNI GGTCTC 1 cut(s) 478
BsrDI GCAATG 3 cut(s) 860, 932, 1017
BsrFI RCCGGY 1 cut(s) 1001
BssAI RCCGGY 1 cut(s) 1001
BssECI CCNNGG 2 cut(s) 148, 280
BssMI GATC 1 cut(s) 747
BssNAI GTATAC 1 cut(s) 26
BssSI CACGAG 1 cut(s) 751
Bst1107I GTATAC 1 cut(s) 26
Bst2BI CACGAG 1 cut(s) 751
Bst2UI CCWGG 2 cut(s) 150, 575
Bst4CI ACNGT 4 cut(s) 19, 327, 587, 851
Bst6I CTCTTC 1 cut(s) 821
BstAPI GCANNNNNTGC 1 cut(s) 670
BstBAI YACGTR 1 cut(s) 418
BstC8I GCNNGC 2 cut(s) 9, 903
BstDEI CTNAG 3 cut(s) 189, 543, 656
BstF5I GGATG 1 cut(s) 532
BstFNI CGCG 1 cut(s) 987
BstHHI GCGC 1 cut(s) 989
BstKTI GATC 1 cut(s) 750
BstMAI GTCTC 4 cut(s) 317, 478, 791, 923
BstMBI GATC 1 cut(s) 747
BstMWI GCNNNNNNNGC 4 cut(s) 229, 238, 670, 818
BstNI CCWGG 2 cut(s) 150, 575
BstNSI RCATGY 1 cut(s) 685
BstSCI CCNGG 5 cut(s) 148, 223, 280, 573, 821
BstSFI CTRYAG 2 cut(s) 18, 264
BstSLI GKGCMC 1 cut(s) 120
BstSNI TACGTA 1 cut(s) 418
BstUI CGCG 1 cut(s) 987
BstV1I GCAGC 5 cut(s) 23, 236, 830, 930, 933
BstZ17I GTATAC 1 cut(s) 26
BsuRI GGCC 4 cut(s) 223, 309, 573, 721
BtsCI GGATG 1 cut(s) 532
BtsIMutI CAGTG 2 cut(s) 442, 664
BveI ACCTGC 1 cut(s) 1006
Cac8I GCNNGC 2 cut(s) 9, 903
CaiI CAGNNNCTG 1 cut(s) 17
CciI TCATGA 1 cut(s) 693
CfoI GCGC 1 cut(s) 989
Cfr10I RCCGGY 1 cut(s) 1001
Cfr13I GGNCC 3 cut(s) 222, 501, 719
CseI GACGC 1 cut(s) 808
Csp6I GTAC 2 cut(s) 328, 596
CspAI ACCGGT 1 cut(s) 1001
CviAII CATG 9 cut(s) 242, 497, 606, 682, 686, 694, 736, 745, 835
CviQI GTAC 2 cut(s) 328, 596
DdeI CTNAG 3 cut(s) 189, 543, 656
DpnI GATC 1 cut(s) 749
DpnII GATC 1 cut(s) 747
DraI TTTAAA 1 cut(s) 1072
DrdI GACNNNNNNGTC 1 cut(s) 184
DseDI GACNNNNNNGTC 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 821
EarI CTCTTC 1 cut(s) 821
EciI GGCGGA 1 cut(s) 24
Eco105I TACGTA 1 cut(s) 418
Eco24I GRGCYC 2 cut(s) 234, 569
Eco31I GGTCTC 1 cut(s) 478
Eco32I GATATC 1 cut(s) 448
Eco47I GGWCC 1 cut(s) 501
Eco57I CTGAAG 1 cut(s) 50
Eco88I CYCGRG 3 cut(s) 803, 813, 1040
EcoRI GAATTC 2 cut(s) 275, 967
EcoRII CCWGG 2 cut(s) 148, 573
EcoRV GATATC 1 cut(s) 448
EcoT22I ATGCAT 1 cut(s) 687
EcoT38I GRGCYC 2 cut(s) 234, 569
Esp3I CGTCTC 2 cut(s) 317, 791
FaeI CATG 9 cut(s) 245, 500, 609, 685, 689, 697, 739, 748, 838
FalI AAGNNNNNCTT 2 cut(s) 698, 730
FaqI GGGAC 1 cut(s) 514
FatI CATG 9 cut(s) 241, 496, 605, 681, 685, 693, 735, 744, 834
FauI CCCGC 1 cut(s) 992
FbaI TGATCA 1 cut(s) 747
FblI GTMKAC 1 cut(s) 25
Fnu4HI GCNGC 6 cut(s) 12, 78, 250, 819, 919, 922
FokI GGATG 1 cut(s) 539
FriOI GRGCYC 2 cut(s) 234, 569
Fsp4HI GCNGC 6 cut(s) 12, 78, 250, 819, 919, 922
FspBI CTAG 1 cut(s) 723
GlaI GCGC 1 cut(s) 988
GluI GCNGC 6 cut(s) 12, 78, 250, 819, 919, 922
HaeIII GGCC 4 cut(s) 223, 309, 573, 721
HapII CCGG 6 cut(s) 205, 225, 282, 765, 822, 1002
HgaI GACGC 1 cut(s) 808
HhaI GCGC 1 cut(s) 989
Hin1II CATG 9 cut(s) 245, 500, 609, 685, 689, 697, 739, 748, 838
Hin6I GCGC 1 cut(s) 987
HinP1I GCGC 1 cut(s) 987
HincII GTYRAC 1 cut(s) 287
HindII GTYRAC 1 cut(s) 287
HindIII AAGCTT 1 cut(s) 878
HpaII CCGG 6 cut(s) 205, 225, 282, 765, 822, 1002
HphI GGTGA 2 cut(s) 239, 637
Hpy166II GTNNAC 4 cut(s) 26, 287, 358, 945
Hpy188I TCNGA 9 cut(s) 85, 190, 295, 301, 317, 397, 407, 592, 847
Hpy188III TCNNGA 7 cut(s) 205, 490, 511, 619, 694, 751, 765
Hpy8I GTNNAC 4 cut(s) 26, 287, 358, 945
HpyAV CCTTC 3 cut(s) 517, 546, 781
HpyCH4III ACNGT 4 cut(s) 19, 327, 587, 851
HpyCH4IV ACGT 1 cut(s) 417
HpyCH4V TGCA 6 cut(s) 7, 103, 685, 865, 937, 1015
HpyF10VI GCNNNNNNNGC 4 cut(s) 229, 238, 670, 818
HpyF3I CTNAG 3 cut(s) 189, 543, 656
HpySE526I ACGT 1 cut(s) 417
Hsp92II CATG 9 cut(s) 245, 500, 609, 685, 689, 697, 739, 748, 838
HspAI GCGC 1 cut(s) 987
Kpn2I TCCGGA 2 cut(s) 204, 764
Ksp22I TGATCA 1 cut(s) 747
Kzo9I GATC 1 cut(s) 747
LmnI GCTCC 1 cut(s) 994
Lsp1109I GCAGC 5 cut(s) 23, 236, 830, 930, 933
LweI GCATC 1 cut(s) 1017
MaeI CTAG 1 cut(s) 723
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 2 cut(s) 437, 830
MalI GATC 1 cut(s) 749
MboI GATC 1 cut(s) 747
MboII GAAGA 5 cut(s) 358, 634, 718, 838, 1058
MfeI CAATTG 3 cut(s) 72, 377, 477
MhlI GDGCHC 3 cut(s) 120, 234, 569
MluCI AATT 8 cut(s) 72, 275, 331, 377, 430, 477, 967, 1073
MlyI GAGTC 5 cut(s) 194, 382, 487, 838, 1032
MnlI CCTC 4 cut(s) 550, 586, 747, 1036
Mph1103I ATGCAT 1 cut(s) 687
MroI TCCGGA 2 cut(s) 204, 764
MroXI GAANNNNTTC 1 cut(s) 586
MseI TTAA 4 cut(s) 195, 1023, 1071, 1114
MslI CAYNNNNRTG 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 249
MspI CCGG 6 cut(s) 205, 225, 282, 765, 822, 1002
MspR9I CCNGG 5 cut(s) 150, 225, 282, 575, 823
MunI CAATTG 3 cut(s) 72, 377, 477
MvaI CCWGG 2 cut(s) 150, 575
MvnI CGCG 1 cut(s) 987
MwoI GCNNNNNNNGC 4 cut(s) 229, 238, 670, 818
NciI CCSGG 3 cut(s) 225, 282, 823
NdeII GATC 1 cut(s) 747
NlaIII CATG 9 cut(s) 245, 500, 609, 685, 689, 697, 739, 748, 838
NlaIV GGNNCC 2 cut(s) 117, 502
NmuCI GTSAC 2 cut(s) 437, 830
NsiI ATGCAT 1 cut(s) 687
NspI RCATGY 1 cut(s) 685
PaeR7I CTCGAG 1 cut(s) 1040
PagI TCATGA 1 cut(s) 693
PdmI GAANNNNTTC 1 cut(s) 586
PfeI GAWTC 5 cut(s) 296, 402, 652, 690, 908
PflMI CCANNNNNTGG 1 cut(s) 149
PinAI ACCGGT 1 cut(s) 1001
PkrI GCNGC 6 cut(s) 13, 79, 251, 820, 920, 923
PleI GAGTC 5 cut(s) 193, 382, 487, 837, 1032
PpsI GAGTC 5 cut(s) 193, 382, 487, 837, 1032
Ppu21I YACGTR 1 cut(s) 418
PsiI TTATAA 2 cut(s) 884, 1034
Psp6I CCWGG 2 cut(s) 148, 573
PspGI CCWGG 2 cut(s) 148, 573
PspN4I GGNNCC 2 cut(s) 117, 502
PspPI GGNCC 3 cut(s) 222, 501, 719
PspXI VCTCGAGB 1 cut(s) 1040
PstNI CAGNNNCTG 1 cut(s) 17
RsaI GTAC 2 cut(s) 329, 597
RsaNI GTAC 2 cut(s) 328, 596
RseI CAYNNNNRTG 1 cut(s) 240
SaqAI TTAA 4 cut(s) 195, 1023, 1071, 1114
SatI GCNGC 6 cut(s) 12, 78, 250, 819, 919, 922
Sau3AI GATC 1 cut(s) 747
Sau96I GGNCC 3 cut(s) 222, 501, 719
SchI GAGTC 5 cut(s) 194, 382, 487, 838, 1032
ScrFI CCNGG 5 cut(s) 150, 225, 282, 575, 823
SduI GDGCHC 3 cut(s) 120, 234, 569
SfaNI GCATC 1 cut(s) 1017
SfcI CTRYAG 2 cut(s) 18, 264
Sfr274I CTCGAG 1 cut(s) 1040
SinI GGWCC 1 cut(s) 501
SlaI CTCGAG 1 cut(s) 1040
SmiMI CAYNNNNRTG 1 cut(s) 240
SmlI CTYRAG 3 cut(s) 488, 875, 1040
SmoI CTYRAG 3 cut(s) 488, 875, 1040
SnaBI TACGTA 1 cut(s) 418
Sse9I AATT 8 cut(s) 72, 275, 331, 377, 430, 477, 967, 1073
SsiI CCGC 4 cut(s) 35, 78, 247, 985
SspMI CTAG 1 cut(s) 723
StyD4I CCNGG 5 cut(s) 148, 223, 280, 573, 821
TaaI ACNGT 4 cut(s) 19, 327, 587, 851
TaiI ACGT 1 cut(s) 420
TaqI TCGA 2 cut(s) 450, 1041
TaqII GACCGA 1 cut(s) 518
TasI AATT 8 cut(s) 72, 275, 331, 377, 430, 477, 967, 1073
TatI WGTACW 1 cut(s) 327
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 5 cut(s) 296, 402, 652, 690, 908
Tru1I TTAA 4 cut(s) 195, 1023, 1071, 1114
Tru9I TTAA 4 cut(s) 195, 1023, 1071, 1114
TscAI CASTG 2 cut(s) 442, 664
TseFI GTSAC 2 cut(s) 437, 830
TseI GCWGC 5 cut(s) 11, 249, 818, 918, 921
Tsp45I GTSAC 2 cut(s) 437, 830
TspDTI ATGAA 4 cut(s) 359, 682, 752, 965
TspRI CASTG 2 cut(s) 442, 664
Van91I CCANNNNNTGG 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 501
XapI RAATTY 2 cut(s) 275, 967
XceI RCATGY 1 cut(s) 685
XhoI CTCGAG 1 cut(s) 1040
XmiI GTMKAC 1 cut(s) 25
XmnI GAANNNNTTC 1 cut(s) 586
XspI CTAG 1 cut(s) 723
Zsp2I ATGCAT 1 cut(s) 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.