Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000757

Physical Location & Seq

Genomic Coordinates Forward (+)

22678092 .. 22679302

Gene Structure 1211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G61470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGAGCGGTGAAGTTTGGAGATGGAACAAGCAAGCAGAGATGAATTCGATAAGAGATTGTTTGAAACATTGTAATTCCATCGCTATCGACACAGAGTTTCCCGGATGCTTAAAGGAGACTCCCATGGACGCAAGTGATGAAATTCGTTATAGAGACATGAAATTCAATGTGGACAACACCCATCTCATCCAGTTAGGGTTAACGCTATTCGGCAAAGGAATCACTAAAACCTGGGAGATCAACTTGTCAGATTTCAACGAATCTAAGAGCTTGAAAAATGATAAATCTATAGCGTTTTTAAAAAACAATGGTTTGGATCTGGATAAGATCAGAGAAGAAGGTATTGGAATCGAAGAGTTCTTCATGGAGTTTTCTCAGATTCTCAATGAGAAACATGGAAAAATGAGATGGGTGACTTTTCAAGGCTCTTACGACAAAGCTTATCTACTTAAAGGTTTAACTAGAAAACCATTACCCGAGACTTCGAAAGAGTTTGATGAAACCGTCCAGCAGCTTTTGGGAAGGTTTGTTTATGATGTGAAGAAAATGGCTGGATTATGCAGCGGACTAAGTAGCCGTTTCGGACTACAGAGAATAGCGGATGTGTTGCAGATGAGGCGTGTTGGAAAAGCTCATCACGCTGGATCAGACAGCGAATTGACGGCTCGTGTCTTCACTAAGTTGATTTTCGATTTGGTCAATAGTAGAAAGGAGAGTACTGGAAGAAGAGCTGATGATCAGCAATATCAACTAGAGCAGCAGCAGCATCAGCAACAGCTTATGATGACTAGATGTTACATCCCGATACCGGTCCAAGGAAGGAACTACGTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000288 GO:0000291 GO:0000932 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004535 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017148 GO:0019222 GO:0019439 GO:0030014 GO:0030015 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032991 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CAF1

Protein Analysis

278

Amino Acids

32.16

Weight (kDa)

8.49

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAF1	PF04857	5 - 115	9.5e-14	CAF1 family ribonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06450 AT1G27820 AT1G27890 AT1G61470 AT3G44240
fragaria_vesca	FvH4_6g28110 FvH4_6g28140 FvH4_6g29280 FvH4_6g29280
malus_domestica	MD03G1041900.v1.1 MD09G1229300.v1.1 MD11G1042700.v1.1 MD12G1082100.v1.1 MD14G1080800.v1.1
prunus_persica	Prupe.1G188200_v2.0.a1 Prupe.1G190800_v2.0.a1 Prupe.1G190900_v2.0.a1 Prupe.3G105100_v2.0.a1 Prupe.7G010200_v2.0.a1
pyrus_communis	pycom09g14790 pycom14g07010
rosa_chinensis	RchiOBHm_Chr2g0132091 RchiOBHm_Chr2g0132101 RchiOBHm_Chr2g0134441 RchiOBHm_Chr2g0134461 RchiOBHm_Chr2g0136851 RchiOBHm_Chr2g0167821 RchiOBHm_Chr2g0167861 RchiOBHm_Chr2g0167901 RchiOBHm_Chr2g0167921 RchiOBHm_Chr6g0266841
rosa_laevigata	RLG00000019225 RLG00000019226 RLG00000019393
rosa_multiflora	Rmu_sc0001299.1_g000004 Rmu_sc0005571.1_g000018
rosa_roxburghii	Rroxscaffold_2G00110210 Rroxscaffold_2G00110240 Rroxscaffold_2G00112400 Rroxscaffold_3G00239330 Rroxscaffold_4G00313080
rosa_rugosa	Rorug02G0302000 Rorug02G0302200 Rorug02G0317200 Rorug02G0317200 Rorug03G0220600
rosa_samantha	Rh2AG355100 Rh2AG355200 Rh2AG369800 Rh2AG369900 Rh2AG384800 Rh2CG338700 Rh2CG338800 Rh2CG353700 Rh2CG371400 Rh2DG370100 Rh2DG377900 Rh2DG378000 Rh2DG392800 Rh2DG392900 Rh2DG408200 Rh6BG148800 Rh6BG149300 Rh6CG159200 Rh6DG133000 Rh6DG133400
rosa_wichuraiana	Rw1G013790 Rw2G028830 Rw2G028840 Rw2G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	6
AciI	CCGC	3 cut(s)	6, 564, 599
AclWI	GGATC	2 cut(s)	324, 652
AcsI	RAATTY	3 cut(s)	43, 141, 161
AfaI	GTAC	1 cut(s)	718
AfiI	CCNNNNNNNGG	2 cut(s)	808, 815
AgeI	ACCGGT	1 cut(s)	808
AgsI	TTSAA	5 cut(s)	64, 166, 256, 274, 422
AjnI	CCWGG	1 cut(s)	230
AjuI	GAANNNNNNNTTGG	2 cut(s)	327, 359
AluBI	AGCT	6 cut(s)	270, 440, 514, 632, 731, 778
AluI	AGCT	6 cut(s)	270, 440, 514, 632, 731, 778
Alw26I	GTCTC	3 cut(s)	110, 147, 473
AlwI	GGATC	2 cut(s)	324, 652
Ama87I	CYCGRG	1 cut(s)	476
ApeKI	GCWGC	5 cut(s)	511, 561, 757, 760, 763
ApoI	RAATTY	3 cut(s)	43, 141, 161
AsiGI	ACCGGT	1 cut(s)	808
AspS9I	GGNCC	1 cut(s)	811
AsuC2I	CCSGG	1 cut(s)	102
AsuHPI	GGTGA	2 cut(s)	20, 424
AsuII	TTCGAA	1 cut(s)	485
AvaI	CYCGRG	1 cut(s)	476
AvaII	GGWCC	1 cut(s)	811
BauI	CACGAG	1 cut(s)	666
BbsI	GAAGAC	1 cut(s)	664
BbvI	GCAGC	5 cut(s)	523, 573, 769, 772, 775
BccI	CCATC	4 cut(s)	15, 86, 189, 402
BceAI	ACGGC	2 cut(s)	561, 678
BciT130I	CCWGG	1 cut(s)	232
BclI	TGATCA	1 cut(s)	736
BcnI	CCSGG	1 cut(s)	102
BcoDI	GTCTC	3 cut(s)	110, 147, 473
BfaI	CTAG	3 cut(s)	462, 752, 789
BfmI	CTRYAG	2 cut(s)	288, 587
BisI	GCNGC	5 cut(s)	512, 562, 758, 761, 764
BlsI	GCNGC	5 cut(s)	513, 563, 759, 762, 765
BmcAI	AGTACT	1 cut(s)	718
Bme1390I	CCNGG	2 cut(s)	102, 232
Bme18I	GGWCC	1 cut(s)	811
BmeT110I	CYCGRG	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	811
BmrFI	CCNGG	2 cut(s)	102, 232
BmsI	GCATC	2 cut(s)	95, 775
BpiI	GAAGAC	1 cut(s)	664
Bpu14I	TTCGAA	1 cut(s)	485
BpuMI	CCSGG	1 cut(s)	102
BsaAI	YACGTR	1 cut(s)	829
BsaJI	CCNNGG	3 cut(s)	123, 231, 814
BsaWI	WCCGGW	1 cut(s)	808
Bsc4I	CCNNNNNNNGG	2 cut(s)	808, 815
Bse118I	RCCGGY	1 cut(s)	808
Bse1I	ACTGG	2 cut(s)	190, 724
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	3 cut(s)	123, 231, 814
BseGI	GGATG	4 cut(s)	110, 186, 607, 798
BseLI	CCNNNNNNNGG	2 cut(s)	808, 815
BseMII	CTCAG	1 cut(s)	389
BseNI	ACTGG	2 cut(s)	190, 724
BseXI	GCAGC	5 cut(s)	523, 573, 769, 772, 775
BshTI	ACCGGT	1 cut(s)	808
BsiHKCI	CYCGRG	1 cut(s)	476
BsiSI	CCGG	2 cut(s)	102, 809
BslI	CCNNNNNNNGG	2 cut(s)	808, 815
BsmAI	GTCTC	3 cut(s)	110, 147, 473
BsoBI	CYCGRG	1 cut(s)	476
Bsp119I	TTCGAA	1 cut(s)	485
Bsp143I	GATC	5 cut(s)	237, 316, 327, 644, 736
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	3 cut(s)	6, 564, 599
BspCNI	CTCAG	1 cut(s)	388
BspPI	GGATC	2 cut(s)	324, 652
BspQI	GCTCTTC	1 cut(s)	721
BspT104I	TTCGAA	1 cut(s)	485
BsrBI	CCGCTC	1 cut(s)	6
BsrFI	RCCGGY	1 cut(s)	808
BsrI	ACTGG	2 cut(s)	190, 724
BssAI	RCCGGY	1 cut(s)	808
BssECI	CCNNGG	3 cut(s)	123, 231, 814
BssMI	GATC	5 cut(s)	237, 316, 327, 644, 736
BssSI	CACGAG	1 cut(s)	666
BssT1I	CCWWGG	2 cut(s)	123, 814
Bst2BI	CACGAG	1 cut(s)	666
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	505
Bst6I	CTCTTC	2 cut(s)	348, 721
BstBAI	YACGTR	1 cut(s)	829
BstBI	TTCGAA	1 cut(s)	485
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	4 cut(s)	264, 375, 569, 678
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	4 cut(s)	110, 186, 607, 798
BstKTI	GATC	5 cut(s)	240, 319, 330, 647, 739
BstMAI	GTCTC	3 cut(s)	110, 147, 473
BstMBI	GATC	5 cut(s)	237, 316, 327, 644, 736
BstMWI	GCNNNNNNNGC	4 cut(s)	616, 638, 763, 769
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	2 cut(s)	100, 230
BstSFI	CTRYAG	2 cut(s)	288, 587
BstSNI	TACGTA	1 cut(s)	829
BstV1I	GCAGC	5 cut(s)	523, 573, 769, 772, 775
BstV2I	GAAGAC	1 cut(s)	664
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BtgI	CCRYGG	1 cut(s)	123
BtgZI	GCGATG	1 cut(s)	64
BtsCI	GGATG	4 cut(s)	110, 186, 607, 798
Cac8I	GCNNGC	1 cut(s)	33
Cfr10I	RCCGGY	1 cut(s)	808
Cfr13I	GGNCC	1 cut(s)	811
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	717
CspAI	ACCGGT	1 cut(s)	808
CviAII	CATG	4 cut(s)	124, 157, 364, 395
CviQI	GTAC	1 cut(s)	717
DdeI	CTNAG	4 cut(s)	264, 375, 569, 678
DpnI	GATC	5 cut(s)	239, 318, 329, 646, 738
DpnII	GATC	5 cut(s)	237, 316, 327, 644, 736
DraI	TTTAAA	1 cut(s)	300
Eam1104I	CTCTTC	2 cut(s)	348, 721
EarI	CTCTTC	2 cut(s)	348, 721
Eco105I	TACGTA	1 cut(s)	829
Eco130I	CCWWGG	2 cut(s)	123, 814
Eco47I	GGWCC	1 cut(s)	811
Eco88I	CYCGRG	1 cut(s)	476
EcoRI	GAATTC	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	230
EcoT14I	CCWWGG	2 cut(s)	123, 814
ErhI	CCWWGG	2 cut(s)	123, 814
FaeI	CATG	4 cut(s)	127, 160, 367, 398
FaiI	YATR	9 cut(s)	125, 150, 158, 290, 365, 396, 534, 559, 782
FatI	CATG	4 cut(s)	123, 156, 363, 394
FbaI	TGATCA	1 cut(s)	736
Fnu4HI	GCNGC	5 cut(s)	512, 562, 758, 761, 764
FokI	GGATG	4 cut(s)	117, 173, 614, 785
Fsp4HI	GCNGC	5 cut(s)	512, 562, 758, 761, 764
FspBI	CTAG	3 cut(s)	462, 752, 789
GluI	GCNGC	5 cut(s)	512, 562, 758, 761, 764
HapII	CCGG	2 cut(s)	102, 809
HgaI	GACGC	1 cut(s)	137
Hin1II	CATG	4 cut(s)	127, 160, 367, 398
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	5 cut(s)	118, 219, 260, 348, 379
HpaI	GTTAAC	1 cut(s)	201
HpaII	CCGG	2 cut(s)	102, 809
HphI	GGTGA	2 cut(s)	20, 424
Hpy166II	GTNNAC	2 cut(s)	172, 201
Hpy188I	TCNGA	5 cut(s)	250, 332, 378, 584, 649
Hpy188III	TCNNGA	2 cut(s)	320, 802
Hpy8I	GTNNAC	2 cut(s)	172, 201
HpyAV	CCTTC	3 cut(s)	332, 516, 813
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4IV	ACGT	1 cut(s)	828
HpyCH4V	TGCA	2 cut(s)	561, 610
HpyF10VI	GCNNNNNNNGC	4 cut(s)	616, 638, 763, 769
HpyF3I	CTNAG	4 cut(s)	264, 375, 569, 678
HpySE526I	ACGT	1 cut(s)	828
Hsp92II	CATG	4 cut(s)	127, 160, 367, 398
Ksp22I	TGATCA	1 cut(s)	736
KspAI	GTTAAC	1 cut(s)	201
Kzo9I	GATC	5 cut(s)	237, 316, 327, 644, 736
LguI	GCTCTTC	1 cut(s)	721
Lsp1109I	GCAGC	5 cut(s)	523, 573, 769, 772, 775
LweI	GCATC	2 cut(s)	95, 775
MaeI	CTAG	3 cut(s)	462, 752, 789
MaeII	ACGT	1 cut(s)	828
MaeIII	GTNAC	2 cut(s)	412, 794
MalI	GATC	5 cut(s)	239, 318, 329, 646, 738
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	5 cut(s)	237, 316, 327, 644, 736
MboII	GAAGA	7 cut(s)	347, 352, 365, 553, 664, 735, 738
MflI	RGATCY	1 cut(s)	316
MluCI	AATT	5 cut(s)	43, 73, 141, 161, 656
MlyI	GAGTC	1 cut(s)	112
MmeI	TCCRAC	1 cut(s)	604
MnlI	CCTC	1 cut(s)	609
MseI	TTAA	5 cut(s)	110, 200, 299, 450, 458
MspA1I	CMGCKG	1 cut(s)	564
MspI	CCGG	2 cut(s)	102, 809
MspR9I	CCNGG	2 cut(s)	102, 232
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	4 cut(s)	616, 638, 763, 769
NciI	CCSGG	1 cut(s)	102
NcoI	CCATGG	1 cut(s)	123
NdeII	GATC	5 cut(s)	237, 316, 327, 644, 736
NlaIII	CATG	4 cut(s)	127, 160, 367, 398
NmuCI	GTSAC	1 cut(s)	412
NspV	TTCGAA	1 cut(s)	485
PciSI	GCTCTTC	1 cut(s)	721
PfeI	GAWTC	4 cut(s)	219, 260, 348, 379
PfoI	TCCNGGA	1 cut(s)	100
PinAI	ACCGGT	1 cut(s)	808
PkrI	GCNGC	5 cut(s)	513, 563, 759, 762, 765
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
Ppu21I	YACGTR	1 cut(s)	829
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PspPI	GGNCC	1 cut(s)	811
PsuI	RGATCY	1 cut(s)	316
RsaI	GTAC	1 cut(s)	718
RsaNI	GTAC	1 cut(s)	717
SapI	GCTCTTC	1 cut(s)	721
SaqAI	TTAA	5 cut(s)	110, 200, 299, 450, 458
SatI	GCNGC	5 cut(s)	512, 562, 758, 761, 764
Sau3AI	GATC	5 cut(s)	237, 316, 327, 644, 736
Sau96I	GGNCC	1 cut(s)	811
ScaI	AGTACT	1 cut(s)	718
SchI	GAGTC	1 cut(s)	112
ScrFI	CCNGG	2 cut(s)	102, 232
SfaNI	GCATC	2 cut(s)	95, 775
SfcI	CTRYAG	2 cut(s)	288, 587
SfuI	TTCGAA	1 cut(s)	485
SinI	GGWCC	1 cut(s)	811
SnaBI	TACGTA	1 cut(s)	829
Sse9I	AATT	5 cut(s)	43, 73, 141, 161, 656
SsiI	CCGC	3 cut(s)	6, 564, 599
SspMI	CTAG	3 cut(s)	462, 752, 789
StyD4I	CCNGG	2 cut(s)	100, 230
StyI	CCWWGG	2 cut(s)	123, 814
TaaI	ACNGT	1 cut(s)	505
TaiI	ACGT	1 cut(s)	831
TaqI	TCGA	5 cut(s)	47, 87, 351, 485, 690
TasI	AATT	5 cut(s)	43, 73, 141, 161, 656
TatI	WGTACW	1 cut(s)	716
TfiI	GAWTC	4 cut(s)	219, 260, 348, 379
Tru1I	TTAA	5 cut(s)	110, 200, 299, 450, 458
Tru9I	TTAA	5 cut(s)	110, 200, 299, 450, 458
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	5 cut(s)	511, 561, 757, 760, 763
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	5 cut(s)	56, 153, 173, 352, 513
VpaK11BI	GGWCC	1 cut(s)	811
XapI	RAATTY	3 cut(s)	43, 141, 161
XspI	CTAG	3 cut(s)	462, 752, 789
ZrmI	AGTACT	1 cut(s)	718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.