Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0000757

Physical Location & Seq

Genomic Coordinates Forward (+)

8300118 .. 8301180

Gene Structure 1063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G105100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGACTTTGGTCAAAGATAACATTCGACACAAATTCAAGAACAACGCGGAGCACAGGAGAGCAAAATTTAAGAAGCCTAACCCAGAATTAAAGATGAATAAAAGAGTGGAGATTCGAAGCGTTTGGCAACAAAATTTAGAATCCGAGTTTGCTCTCATTGAGGCCGCAATTGCCCACTACCCTTTTGTCTCCTTCGACACTGAATTCCCAGGCACCATACTTGAATGCAAGGCTTGGGATCCCCCTGCATACCAATACCAAATCATGAAGGGCAATGTGGACGCCATGAACATCATTCAGCTGGGCCTAACACTCTCAGACCACAGAGGGAACTTGCCTGATTTGGGCACAGATTGCTGCTACATATGGGAATTCAACTTCAGGGACTTCGACATTGAGCGTGGCGACCATCACAGCGCAGACGCAATCGAGTTTCTTAAGCGGCATGAAATCGATTTCTTGCAGAACAAGAAAAAGGGTATTTACTCTTCCAACTTCTCGTGGCTGATGGAAAGGATGGTACTCCACAATAGGTCCCGTTTAACATGGGTGACTTTCCATGGTTCGTATGATTTCGGGTACCTGATGAAGATTCTAACTCAGAAGGACTTGCCGATGGACATTGGTGGTTTCATGGGGGAGGTGGAGAAAAAGTTTGGGAAAAGAGTTTACGACATCAAGCACTTGATCAAGTGTCAAGGGCTTTATGGAGGTTTAGAGAAAGTGGCTCGTTTGCTTCAGGTTGGTCGTGTGGCTGGGAAGAGTCACCAGGCTGGTTCTGATAGTCTATTGACTTTGCAGACGTTTATGAGGCTCAAGGATGTGCATTTCGGAAGTTTTTTAAAGAATAAAGACAACTGTAGCCTAAGTTTAAATCAGTTTCGAGGGGTTTTGCATGGTTTAGAACTTGAGGCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CAF1

Protein Analysis

307

Amino Acids

35.52

Weight (kDa)

8.93

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06450 AT1G27820 AT1G27890 AT1G61470 AT3G44240
fragaria_vesca	FvH4_6g28110 FvH4_6g28140 FvH4_6g29280 FvH4_6g29280
malus_domestica	MD03G1041900.v1.1 MD09G1229300.v1.1 MD11G1042700.v1.1 MD12G1082100.v1.1 MD14G1080800.v1.1
prunus_persica	Prupe.1G188200_v2.0.a1 Prupe.1G190800_v2.0.a1 Prupe.1G190900_v2.0.a1 Prupe.3G105100_v2.0.a1 Prupe.7G010200_v2.0.a1
pyrus_communis	pycom09g14790 pycom14g07010
rosa_chinensis	RchiOBHm_Chr2g0132091 RchiOBHm_Chr2g0132101 RchiOBHm_Chr2g0134441 RchiOBHm_Chr2g0134461 RchiOBHm_Chr2g0136851 RchiOBHm_Chr2g0167821 RchiOBHm_Chr2g0167861 RchiOBHm_Chr2g0167901 RchiOBHm_Chr2g0167921 RchiOBHm_Chr6g0266841
rosa_laevigata	RLG00000019225 RLG00000019226 RLG00000019393
rosa_multiflora	Rmu_sc0001299.1_g000004 Rmu_sc0005571.1_g000018
rosa_roxburghii	Rroxscaffold_2G00110210 Rroxscaffold_2G00110240 Rroxscaffold_2G00112400 Rroxscaffold_3G00239330 Rroxscaffold_4G00313080
rosa_rugosa	Rorug02G0302000 Rorug02G0302200 Rorug02G0317200 Rorug02G0317200 Rorug03G0220600
rosa_samantha	Rh2AG355100 Rh2AG355200 Rh2AG369800 Rh2AG369900 Rh2AG384800 Rh2CG338700 Rh2CG338800 Rh2CG353700 Rh2CG371400 Rh2DG370100 Rh2DG377900 Rh2DG378000 Rh2DG392800 Rh2DG392900 Rh2DG408200 Rh6BG148800 Rh6BG149300 Rh6CG159200 Rh6DG133000 Rh6DG133400
rosa_wichuraiana	Rw1G013790 Rw2G028830 Rw2G028840 Rw2G031470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	579
AccB1I	GGYRCC	2 cut(s)	212, 579
AccII	CGCG	1 cut(s)	47
AciI	CCGC	3 cut(s)	47, 165, 442
AclWI	GGATC	2 cut(s)	233, 246
AcsI	RAATTY	5 cut(s)	32, 65, 133, 203, 371
AcuI	CTGAAG	2 cut(s)	364, 722
AcyI	GRCGYC	1 cut(s)	282
AfaI	GTAC	2 cut(s)	522, 581
AfiI	CCNNNNNNNGG	1 cut(s)	344
AflII	CTTAAG	1 cut(s)	437
AgsI	TTSAA	3 cut(s)	37, 224, 376
AjnI	CCWGG	2 cut(s)	208, 768
AluBI	AGCT	1 cut(s)	301
AluI	AGCT	1 cut(s)	301
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	1 cut(s)	193
AlwI	GGATC	2 cut(s)	233, 246
AoxI	GGCC	2 cut(s)	162, 304
ApeKI	GCWGC	1 cut(s)	357
ApoI	RAATTY	5 cut(s)	32, 65, 133, 203, 371
Asp718I	GGTACC	1 cut(s)	579
AspLEI	GCGC	1 cut(s)	419
AspS9I	GGNCC	2 cut(s)	304, 534
AsuHPI	GGTGA	2 cut(s)	562, 758
AsuII	TTCGAA	1 cut(s)	115
AvaII	GGWCC	1 cut(s)	534
BaeGI	GKGCMC	1 cut(s)	350
BamHI	GGATCC	1 cut(s)	238
BanI	GGYRCC	2 cut(s)	212, 579
BarI	GAAGNNNNNNTAC	2 cut(s)	472, 504
BauI	CACGAG	1 cut(s)	499
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	344
BccI	CCATC	4 cut(s)	417, 502, 511, 610
BciT130I	CCWGG	2 cut(s)	210, 770
BclI	TGATCA	1 cut(s)	687
BcoDI	GTCTC	1 cut(s)	193
BfmI	CTRYAG	1 cut(s)	859
BfrI	CTTAAG	1 cut(s)	437
BisI	GCNGC	3 cut(s)	165, 358, 443
BlsI	GCNGC	3 cut(s)	166, 359, 444
Bme1390I	CCNGG	2 cut(s)	210, 770
Bme18I	GGWCC	1 cut(s)	534
BmgT120I	GGNCC	2 cut(s)	304, 534
BmiI	GGNNCC	4 cut(s)	214, 240, 536, 581
BmrFI	CCNGG	2 cut(s)	210, 770
BoxI	GACNNNNGTC	1 cut(s)	8
Bpu14I	TTCGAA	1 cut(s)	115
BpuEI	CTTGAG	1 cut(s)	800
Bsa29I	ATCGAT	1 cut(s)	453
BsaHI	GRCGYC	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	208, 559
BsaXI	ACNNNNNCTCC	2 cut(s)	638, 668
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
Bse3DI	GCAATG	1 cut(s)	280
BseBI	CCWGG	2 cut(s)	210, 770
BseCI	ATCGAT	1 cut(s)	453
BseDI	CCNNGG	2 cut(s)	208, 559
BseGI	GGATG	2 cut(s)	522, 826
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMI	GCAATG	1 cut(s)	280
BseMII	CTCAG	2 cut(s)	330, 614
BseSI	GKGCMC	1 cut(s)	350
BseXI	GCAGC	1 cut(s)	344
BseYI	CCCAGC	2 cut(s)	301, 755
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	2 cut(s)	164, 306
BshNI	GGYRCC	2 cut(s)	212, 579
BshVI	ATCGAT	1 cut(s)	453
BsiHKAI	GWGCWC	1 cut(s)	54
BslFI	GGGAC	2 cut(s)	398, 520
BslI	CCNNNNNNNGG	1 cut(s)	344
BsmAI	GTCTC	1 cut(s)	193
BsmFI	GGGAC	2 cut(s)	398, 520
BsmI	GAATGC	1 cut(s)	230
BsnI	GGCC	2 cut(s)	164, 306
Bsp119I	TTCGAA	1 cut(s)	115
Bsp1286I	GDGCHC	2 cut(s)	54, 350
Bsp143I	GATC	2 cut(s)	238, 687
Bsp19I	CCATGG	1 cut(s)	559
BspACI	CCGC	3 cut(s)	47, 165, 442
BspANI	GGCC	2 cut(s)	164, 306
BspCNI	CTCAG	2 cut(s)	329, 613
BspDI	ATCGAT	1 cut(s)	453
BspFNI	CGCG	1 cut(s)	47
BspHI	TCATGA	1 cut(s)	264
BspLI	GGNNCC	4 cut(s)	214, 240, 536, 581
BspPI	GGATC	2 cut(s)	233, 246
BspT104I	TTCGAA	1 cut(s)	115
BspT107I	GGYRCC	2 cut(s)	212, 579
BspTI	CTTAAG	1 cut(s)	437
BsrDI	GCAATG	1 cut(s)	280
BssECI	CCNNGG	2 cut(s)	208, 559
BssMI	GATC	2 cut(s)	238, 687
BssNI	GRCGYC	1 cut(s)	282
BssSI	CACGAG	1 cut(s)	499
BssT1I	CCWWGG	1 cut(s)	559
Bst2BI	CACGAG	1 cut(s)	499
Bst2UI	CCWGG	2 cut(s)	210, 770
Bst4CI	ACNGT	1 cut(s)	860
Bst6I	CTCTTC	2 cut(s)	493, 755
BstACI	GRCGYC	1 cut(s)	282
BstAFI	CTTAAG	1 cut(s)	437
BstAPI	GCANNNNNTGC	1 cut(s)	354
BstBI	TTCGAA	1 cut(s)	115
BstDEI	CTNAG	3 cut(s)	316, 600, 866
BstDSI	CCRYGG	1 cut(s)	559
BstF5I	GGATG	2 cut(s)	522, 826
BstFNI	CGCG	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	2 cut(s)	241, 690
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	2 cut(s)	238, 687
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 354
BstNI	CCWGG	2 cut(s)	210, 770
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	208, 768
BstSFI	CTRYAG	1 cut(s)	859
BstSLI	GKGCMC	1 cut(s)	350
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	344
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
Bsu15I	ATCGAT	1 cut(s)	453
BsuRI	GGCC	2 cut(s)	164, 306
BsuTUI	ATCGAT	1 cut(s)	453
BtgI	CCRYGG	1 cut(s)	559
BtsCI	GGATG	2 cut(s)	522, 826
BtsIMutI	CAGTG	1 cut(s)	198
CciI	TCATGA	1 cut(s)	264
CfoI	GCGC	1 cut(s)	419
Cfr13I	GGNCC	2 cut(s)	304, 534
ClaI	ATCGAT	1 cut(s)	453
CseI	GACGC	2 cut(s)	290, 431
Csp6I	GTAC	2 cut(s)	521, 580
CviAII	CATG	7 cut(s)	265, 286, 446, 546, 560, 634, 896
CviQI	GTAC	2 cut(s)	521, 580
DdeI	CTNAG	3 cut(s)	316, 600, 866
DpnI	GATC	2 cut(s)	240, 689
DpnII	GATC	2 cut(s)	238, 687
DraI	TTTAAA	2 cut(s)	843, 873
Eam1104I	CTCTTC	2 cut(s)	493, 755
EarI	CTCTTC	2 cut(s)	493, 755
Eco130I	CCWWGG	1 cut(s)	559
Eco47I	GGWCC	1 cut(s)	534
Eco57I	CTGAAG	2 cut(s)	364, 722
EcoO109I	RGGNCCY	1 cut(s)	534
EcoRI	GAATTC	2 cut(s)	203, 371
EcoRII	CCWGG	2 cut(s)	208, 768
EcoT14I	CCWWGG	1 cut(s)	559
ErhI	CCWWGG	1 cut(s)	559
FaeI	CATG	7 cut(s)	268, 289, 449, 549, 563, 637, 899
FaqI	GGGAC	2 cut(s)	398, 520
FatI	CATG	7 cut(s)	264, 285, 445, 545, 559, 633, 895
FauNDI	CATATG	1 cut(s)	365
FbaI	TGATCA	1 cut(s)	687
Fnu4HI	GCNGC	3 cut(s)	165, 358, 443
FokI	GGATG	2 cut(s)	529, 833
Fsp4HI	GCNGC	3 cut(s)	165, 358, 443
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	3 cut(s)	165, 358, 443
GsaI	CCCAGC	2 cut(s)	305, 759
HaeIII	GGCC	2 cut(s)	164, 306
HgaI	GACGC	2 cut(s)	290, 431
HhaI	GCGC	1 cut(s)	419
Hin1I	GRCGYC	1 cut(s)	282
Hin1II	CATG	7 cut(s)	268, 289, 449, 549, 563, 637, 899
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HinfI	GANTC	4 cut(s)	112, 140, 592, 763
HphI	GGTGA	2 cut(s)	562, 758
Hpy166II	GTNNAC	2 cut(s)	280, 670
Hpy188I	TCNGA	5 cut(s)	145, 319, 603, 781, 833
Hpy188III	TCNNGA	2 cut(s)	37, 265
Hpy8I	GTNNAC	2 cut(s)	280, 670
HpyAV	CCTTC	3 cut(s)	202, 262, 598
HpyCH4III	ACNGT	1 cut(s)	860
HpyCH4IV	ACGT	1 cut(s)	803
HpyCH4V	TGCA	6 cut(s)	228, 248, 463, 799, 826, 895
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 354
HpyF3I	CTNAG	3 cut(s)	316, 600, 866
HpySE526I	ACGT	1 cut(s)	803
Hsp92I	GRCGYC	1 cut(s)	282
Hsp92II	CATG	7 cut(s)	268, 289, 449, 549, 563, 637, 899
HspAI	GCGC	1 cut(s)	417
KpnI	GGTACC	1 cut(s)	583
Ksp22I	TGATCA	1 cut(s)	687
Kzo9I	GATC	2 cut(s)	238, 687
LmnI	GCTCC	1 cut(s)	49
Lsp1109I	GCAGC	1 cut(s)	344
MaeII	ACGT	1 cut(s)	803
MaeIII	GTNAC	2 cut(s)	550, 764
MalI	GATC	2 cut(s)	240, 689
MboI	GATC	2 cut(s)	238, 687
MboII	GAAGA	3 cut(s)	480, 601, 772
MfeI	CAATTG	1 cut(s)	168
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	2 cut(s)	54, 350
MluCI	AATT	7 cut(s)	32, 65, 86, 133, 168, 203, 371
MlyI	GAGTC	1 cut(s)	772
MmeI	TCCRAC	1 cut(s)	516
MnlI	CCTC	7 cut(s)	154, 320, 634, 704, 804, 878, 904
MseI	TTAA	6 cut(s)	69, 89, 438, 542, 842, 872
MspA1I	CMGCKG	1 cut(s)	301
MspCI	CTTAAG	1 cut(s)	437
MspR9I	CCNGG	2 cut(s)	210, 770
MunI	CAATTG	1 cut(s)	168
Mva1269I	GAATGC	1 cut(s)	230
MvaI	CCWGG	2 cut(s)	210, 770
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	2 cut(s)	170, 354
NcoI	CCATGG	1 cut(s)	559
NdeI	CATATG	1 cut(s)	365
NdeII	GATC	2 cut(s)	238, 687
NlaIII	CATG	7 cut(s)	268, 289, 449, 549, 563, 637, 899
NlaIV	GGNNCC	4 cut(s)	214, 240, 536, 581
NmuCI	GTSAC	2 cut(s)	550, 764
NspV	TTCGAA	1 cut(s)	115
PagI	TCATGA	1 cut(s)	264
PctI	GAATGC	1 cut(s)	230
PfeI	GAWTC	3 cut(s)	112, 140, 592
PkrI	GCNGC	3 cut(s)	166, 359, 444
PleI	GAGTC	1 cut(s)	771
PpsI	GAGTC	1 cut(s)	771
PpuMI	RGGWCCY	1 cut(s)	534
PshAI	GACNNNNGTC	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	534
Psp6I	CCWGG	2 cut(s)	208, 768
PspFI	CCCAGC	2 cut(s)	301, 755
PspGI	CCWGG	2 cut(s)	208, 768
PspN4I	GGNNCC	4 cut(s)	214, 240, 536, 581
PspPI	GGNCC	2 cut(s)	304, 534
PspPPI	RGGWCCY	1 cut(s)	534
PsuI	RGATCY	1 cut(s)	238
PvuII	CAGCTG	1 cut(s)	301
RsaI	GTAC	2 cut(s)	522, 581
RsaNI	GTAC	2 cut(s)	521, 580
SaqAI	TTAA	6 cut(s)	69, 89, 438, 542, 842, 872
SatI	GCNGC	3 cut(s)	165, 358, 443
Sau3AI	GATC	2 cut(s)	238, 687
Sau96I	GGNCC	2 cut(s)	304, 534
SchI	GAGTC	1 cut(s)	772
ScrFI	CCNGG	2 cut(s)	210, 770
SduI	GDGCHC	2 cut(s)	54, 350
SetI	ASST	7 cut(s)	303, 536, 585, 645, 715, 744, 806
SfcI	CTRYAG	1 cut(s)	859
SfuI	TTCGAA	1 cut(s)	115
SinI	GGWCC	1 cut(s)	534
SmlI	CTYRAG	3 cut(s)	437, 815, 908
SmoI	CTYRAG	3 cut(s)	437, 815, 908
Sse9I	AATT	7 cut(s)	32, 65, 86, 133, 168, 203, 371
SsiI	CCGC	3 cut(s)	47, 165, 442
StyD4I	CCNGG	2 cut(s)	208, 768
StyI	CCWWGG	1 cut(s)	559
TaaI	ACNGT	1 cut(s)	860
TaiI	ACGT	1 cut(s)	806
TaqI	TCGA	7 cut(s)	25, 115, 195, 390, 429, 453, 883
TasI	AATT	7 cut(s)	32, 65, 86, 133, 168, 203, 371
TauI	GCSGC	2 cut(s)	167, 445
TfiI	GAWTC	3 cut(s)	112, 140, 592
Tru1I	TTAA	6 cut(s)	69, 89, 438, 542, 842, 872
Tru9I	TTAA	6 cut(s)	69, 89, 438, 542, 842, 872
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	2 cut(s)	550, 764
TseI	GCWGC	1 cut(s)	357
Tsp45I	GTSAC	2 cut(s)	550, 764
TspDTI	ATGAA	6 cut(s)	110, 281, 302, 462, 602, 622
TspRI	CASTG	1 cut(s)	205
Vha464I	CTTAAG	1 cut(s)	437
VpaK11BI	GGWCC	1 cut(s)	534
XapI	RAATTY	5 cut(s)	32, 65, 133, 203, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.