Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000741

Physical Location & Seq

Genomic Coordinates Reverse (-)

5128344 .. 5129731

Gene Structure 1388 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G14870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGAAGCTCAACACCTTCATGCCAAGCCTCATGCTGAAGGAGAATGGTCCACAGGCTTCTGTGATTGCTTTTCTGACTGCAAAAATTGTTGTATCACATTCTGGTGTCCATGTATCACCTTTGGCCAAGTCGCCGAGATTGTAGATCGAGGATCCACATCGTGTGGTACTGCTGGAGCTCTATACGCGTTGATAGCCGTAGTAACTGGTTGTGCATGTATATACTCATGTTTCTATCGTGGAAAGATGAGAGCTCAATATAATATTAAAGGAGATGATTGTACTGATTGCCTTAAACATTTCTGCTGTGAGCTTTGTTCTTTGACCCAACAATACCGTGAACTCAAGCACCGCGGTTACGATATGAGTCTTGGATGGGCGGGGAACGTGGAGAGACAACAGAATCAAGGAGGTGTGGCCATGGGTGCTCCGGTCTTCCAAGGCGGCATGACCCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006950 GO:0006979 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009987 GO:0016020 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050896 GO:0051704 GO:0055046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

152

Amino Acids

16.74

Weight (kDa)

6.48

Isoelectric Point (pI)

27.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAC8	PF04749	16 - 114	6.3e-35	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14870 AT1G14870 AT1G14880 AT5G35525
fragaria_vesca	FvH4_4g33890 FvH4_4g33900 FvH4_4g33900 FvH4_4g33930 FvH4_4g34200
malus_domestica	MD16G1021300.v1.1 MD16G1021400.v1.1
prunus_persica	Prupe.1G331100_v2.0.a1
pyrus_communis	pycom13g01870 pycom16g01900 pycom16g01910
rosa_chinensis	RchiOBHm_Chr0c23g0500741 RchiOBHm_Chr4g0409091 RchiOBHm_Chr4g0443411 RchiOBHm_Chr4g0443421 RchiOBHm_Chr4g0443431 RchiOBHm_Chr4g0443441 RchiOBHm_Chr4g0443451 RchiOBHm_Chr4g0443461 RchiOBHm_Chr5g0070111
rosa_laevigata	RLG00000005927 RLG00000005928 RLG00000005929 RLG00000005930 RLG00000019779
rosa_multiflora	Rmu_co8363857.1_g000001 Rmu_co8469801.1_g000001 Rmu_sc0001669.1_g000019 Rmu_sc0004836.1_g000022 Rmu_sc0004849.1_g000015 Rmu_sc0009670.1_g000002 Rmu_ssc0000122.1_g000016 Rmu_ssc0000122.1_g000017
rosa_roxburghii	Rroxscaffold_3G00257420 Rroxscaffold_5G00383970 Rroxscaffold_5G00383980 Rroxscaffold_5G00384010
rosa_rugosa	Rorug04G0346000 Rorug04G0346100 Rorug04G0346200 Rorug04G0346400 Rorug05G0555800
rosa_samantha	Rh4AG154100 Rh4AG401500 Rh4AG401600 Rh4AG401700 Rh4AG401800 Rh4AG401900 Rh4BG412900 Rh4BG413100 Rh4BG413200 Rh4BG413300 Rh4CG162800 Rh4CG428600 Rh4CG428700 Rh4CG428800 Rh4CG428900 Rh4CG429000 Rh4DG408700 Rh4DG408800 Rh4DG408900 Rh4DG409000
rosa_wichuraiana	Rw4G004920 Rw4G034620 Rw4G034630 Rw4G034640 Rw4G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	188, 354
AciI	CCGC	5 cut(s)	352, 354, 380, 444, 454
AclWI	GGATC	2 cut(s)	147, 160
AcoI	YGGCCR	2 cut(s)	124, 417
AcuI	CTGAAG	1 cut(s)	57
AdeI	CACNNNGTG	1 cut(s)	162
AfaI	GTAC	2 cut(s)	169, 283
AflIII	ACRYGT	1 cut(s)	186
AluBI	AGCT	4 cut(s)	8, 179, 254, 313
AluI	AGCT	4 cut(s)	8, 179, 254, 313
Alw21I	GWGCWC	3 cut(s)	181, 256, 430
Alw26I	GTCTC	1 cut(s)	388
AlwI	GGATC	2 cut(s)	147, 160
AoxI	GGCC	2 cut(s)	124, 417
AspS9I	GGNCC	1 cut(s)	48
AsuHPI	GGTGA	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	48
BalI	TGGCCA	2 cut(s)	126, 419
BamHI	GGATCC	1 cut(s)	152
BanII	GRGCYC	2 cut(s)	181, 256
BbsI	GAAGAC	1 cut(s)	427
Bbv12I	GWGCWC	3 cut(s)	181, 256, 430
BccI	CCATC	1 cut(s)	369
BceAI	ACGGC	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	388
BisI	GCNGC	1 cut(s)	445
BlsI	GCNGC	1 cut(s)	446
Bme18I	GGWCC	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	48
BmiI	GGNNCC	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	427
BpmI	CTGGAG	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	329
BsaBI	GATNNNNATC	1 cut(s)	157
BsaJI	CCNNGG	3 cut(s)	352, 420, 439
BsaWI	WCCGGW	1 cut(s)	430
Bse1I	ACTGG	1 cut(s)	211
Bse8I	GATNNNNATC	1 cut(s)	157
BseDI	CCNNGG	3 cut(s)	352, 420, 439
BseGI	GGATG	1 cut(s)	380
BseJI	GATNNNNATC	1 cut(s)	157
BseNI	ACTGG	1 cut(s)	211
Bsh1236I	CGCG	2 cut(s)	188, 354
BshFI	GGCC	2 cut(s)	126, 419
BsiHKAI	GWGCWC	3 cut(s)	181, 256, 430
BsiSI	CCGG	1 cut(s)	431
BsmAI	GTCTC	1 cut(s)	388
BsnI	GGCC	2 cut(s)	126, 419
Bsp1286I	GDGCHC	3 cut(s)	181, 256, 430
Bsp143I	GATC	2 cut(s)	145, 152
Bsp19I	CCATGG	1 cut(s)	420
BspACI	CCGC	5 cut(s)	352, 354, 380, 444, 454
BspANI	GGCC	2 cut(s)	126, 419
BspFNI	CGCG	2 cut(s)	188, 354
BspLI	GGNNCC	1 cut(s)	154
BspPI	GGATC	2 cut(s)	147, 160
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	3 cut(s)	352, 420, 439
BssMI	GATC	2 cut(s)	145, 152
BssT1I	CCWWGG	2 cut(s)	420, 439
Bst4CI	ACNGT	1 cut(s)	338
BstDSI	CCRYGG	2 cut(s)	352, 420
BstF5I	GGATG	1 cut(s)	380
BstFNI	CGCG	2 cut(s)	188, 354
BstKTI	GATC	2 cut(s)	148, 155
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	2 cut(s)	145, 152
BstMWI	GCNNNNNNNGC	4 cut(s)	185, 194, 425, 453
BstNSI	RCATGY	1 cut(s)	219
BstUI	CGCG	2 cut(s)	188, 354
BstV2I	GAAGAC	1 cut(s)	427
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
BsuRI	GGCC	2 cut(s)	126, 419
BtgI	CCRYGG	2 cut(s)	352, 420
BtsCI	GGATG	1 cut(s)	380
Cfr13I	GGNCC	1 cut(s)	48
Cfr42I	CCGCGG	1 cut(s)	355
Csp6I	GTAC	2 cut(s)	168, 282
CviAII	CATG	7 cut(s)	20, 32, 111, 216, 228, 421, 448
CviJI	RGCY	9 cut(s)	8, 28, 57, 126, 179, 197, 254, 313, 419
CviKI_1	RGCY	9 cut(s)	8, 28, 57, 126, 179, 197, 254, 313, 419
CviQI	GTAC	2 cut(s)	168, 282
DpnI	GATC	2 cut(s)	147, 154
DpnII	GATC	2 cut(s)	145, 152
DraIII	CACNNNGTG	1 cut(s)	162
EaeI	YGGCCR	2 cut(s)	124, 417
Ecl136II	GAGCTC	2 cut(s)	179, 254
Eco130I	CCWWGG	2 cut(s)	420, 439
Eco24I	GRGCYC	2 cut(s)	181, 256
Eco47I	GGWCC	1 cut(s)	48
Eco53kI	GAGCTC	2 cut(s)	179, 254
Eco57I	CTGAAG	1 cut(s)	57
EcoICRI	GAGCTC	2 cut(s)	179, 254
EcoT14I	CCWWGG	2 cut(s)	420, 439
EcoT38I	GRGCYC	2 cut(s)	181, 256
ErhI	CCWWGG	2 cut(s)	420, 439
FaeI	CATG	7 cut(s)	23, 35, 114, 219, 231, 424, 451
FatI	CATG	7 cut(s)	19, 31, 110, 215, 227, 420, 447
FauI	CCCGC	1 cut(s)	373
Fnu4HI	GCNGC	1 cut(s)	445
FokI	GGATG	1 cut(s)	387
FriOI	GRGCYC	2 cut(s)	181, 256
Fsp4HI	GCNGC	1 cut(s)	445
GluI	GCNGC	1 cut(s)	445
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	2 cut(s)	126, 419
HapII	CCGG	1 cut(s)	431
Hin1II	CATG	7 cut(s)	23, 35, 114, 219, 231, 424, 451
HinfI	GANTC	2 cut(s)	367, 403
HpaII	CCGG	1 cut(s)	431
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	2 cut(s)	51, 341
Hpy188I	TCNGA	1 cut(s)	76
Hpy8I	GTNNAC	2 cut(s)	51, 341
HpyAV	CCTTC	2 cut(s)	26, 32
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	2 cut(s)	81, 215
HpyF10VI	GCNNNNNNNGC	4 cut(s)	185, 194, 425, 453
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	7 cut(s)	23, 35, 114, 219, 231, 424, 451
KspI	CCGCGG	1 cut(s)	355
Kzo9I	GATC	2 cut(s)	145, 152
LmnI	GCTCC	2 cut(s)	176, 433
LpnPI	CCDG	5 cut(s)	39, 88, 159, 192, 444
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	2 cut(s)	202, 356
MalI	GATC	2 cut(s)	147, 154
MboI	GATC	2 cut(s)	145, 152
MboII	GAAGA	1 cut(s)	427
MflI	RGATCY	1 cut(s)	152
MhlI	GDGCHC	3 cut(s)	181, 256, 430
MlsI	TGGCCA	2 cut(s)	126, 419
MluCI	AATT	1 cut(s)	85
MluI	ACGCGT	1 cut(s)	186
MluNI	TGGCCA	2 cut(s)	126, 419
MlyI	GAGTC	1 cut(s)	376
MnlI	CCTC	3 cut(s)	39, 143, 404
Mox20I	TGGCCA	2 cut(s)	126, 419
MscI	TGGCCA	2 cut(s)	126, 419
MseI	TTAA	2 cut(s)	267, 294
MslI	CAYNNNNRTG	2 cut(s)	18, 103
Msp20I	TGGCCA	2 cut(s)	126, 419
MspA1I	CMGCKG	1 cut(s)	354
MspI	CCGG	1 cut(s)	431
MvnI	CGCG	2 cut(s)	188, 354
MwoI	GCNNNNNNNGC	4 cut(s)	185, 194, 425, 453
NcoI	CCATGG	1 cut(s)	420
NdeII	GATC	2 cut(s)	145, 152
NlaIII	CATG	7 cut(s)	23, 35, 114, 219, 231, 424, 451
NlaIV	GGNNCC	1 cut(s)	154
NmeAIII	GCCGAG	1 cut(s)	160
NspI	RCATGY	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	403
PkrI	GCNGC	1 cut(s)	446
PleI	GAGTC	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	375
Psp124BI	GAGCTC	2 cut(s)	181, 256
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	48
PsuI	RGATCY	1 cut(s)	152
RsaI	GTAC	2 cut(s)	169, 283
RsaNI	GTAC	2 cut(s)	168, 282
RseI	CAYNNNNRTG	2 cut(s)	18, 103
SacI	GAGCTC	2 cut(s)	181, 256
SacII	CCGCGG	1 cut(s)	355
SaqAI	TTAA	2 cut(s)	267, 294
SatI	GCNGC	1 cut(s)	445
Sau3AI	GATC	2 cut(s)	145, 152
Sau96I	GGNCC	1 cut(s)	48
SchI	GAGTC	1 cut(s)	376
SduI	GDGCHC	3 cut(s)	181, 256, 430
SetI	ASST	8 cut(s)	10, 18, 122, 181, 256, 315, 390, 415
Sfr303I	CCGCGG	1 cut(s)	355
SgrBI	CCGCGG	1 cut(s)	355
SinI	GGWCC	1 cut(s)	48
SmiMI	CAYNNNNRTG	2 cut(s)	18, 103
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	1 cut(s)	85
SsiI	CCGC	5 cut(s)	352, 354, 380, 444, 454
SspI	AATATT	1 cut(s)	265
SstI	GAGCTC	2 cut(s)	181, 256
StyI	CCWWGG	2 cut(s)	420, 439
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	1 cut(s)	148
TasI	AATT	1 cut(s)	85
TatI	WGTACW	1 cut(s)	281
TauI	GCSGC	1 cut(s)	447
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	2 cut(s)	267, 294
Tru9I	TTAA	2 cut(s)	267, 294
TspDTI	ATGAA	1 cut(s)	8
VpaK11BI	GGWCC	1 cut(s)	48
XceI	RCATGY	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.