Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000741

Physical Location & Seq

Genomic Coordinates Reverse (-)

5132506 .. 5133860

Gene Structure 1355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G14880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGAAGCTCAACTTCATGCCAAGCCTCATGCTCAAGGAGAATGGTCCACAGGCTTCTGTGATTGCTTCTCTGACTGCCGAAACTGTTGTATCACATTATGTTGTCCATGTATCACATTTGGCCAAGTCGCTGAGATTGTAGATCGAGGATCCAAATCGTGTTGTGCGGCTGGAGCATTATACATGTTGATAGACTTAATAACAAGTTGTGGGCGTATGTACGCGTGTTTCTATAGTGGAAAGATGAGAGCTCAATACAATATTAAAGGAGATGGTTGTACTGATTGCCTTAAACATTTTTGCTGTAACCTCTGTGCTTTGACCCAACAATACCGTGAACTCAAGCACCGCGGTTTCGATATGAGCCTTGGATGGGCAGGGAACGCAGAGAAACAACAAAATCAAGGTGGAGTGGCGATGGGTGCTCCAGCCTTCCAAGGCGGCATGACCCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006950 GO:0006979 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009987 GO:0016020 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050896 GO:0051704 GO:0055046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

151

Amino Acids

16.5

Weight (kDa)

7.84

Isoelectric Point (pI)

35.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAC8	PF04749	15 - 113	3.9e-31	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14870 AT1G14870 AT1G14880 AT5G35525
fragaria_vesca	FvH4_4g33890 FvH4_4g33900 FvH4_4g33900 FvH4_4g33930 FvH4_4g34200
malus_domestica	MD16G1021300.v1.1 MD16G1021400.v1.1
prunus_persica	Prupe.1G331100_v2.0.a1
pyrus_communis	pycom13g01870 pycom16g01900 pycom16g01910
rosa_chinensis	RchiOBHm_Chr0c23g0500741 RchiOBHm_Chr4g0409091 RchiOBHm_Chr4g0443411 RchiOBHm_Chr4g0443421 RchiOBHm_Chr4g0443431 RchiOBHm_Chr4g0443441 RchiOBHm_Chr4g0443451 RchiOBHm_Chr4g0443461 RchiOBHm_Chr5g0070111
rosa_laevigata	RLG00000005927 RLG00000005928 RLG00000005929 RLG00000005930 RLG00000019779
rosa_multiflora	Rmu_co8363857.1_g000001 Rmu_co8469801.1_g000001 Rmu_sc0001669.1_g000019 Rmu_sc0004836.1_g000022 Rmu_sc0004849.1_g000015 Rmu_sc0009670.1_g000002 Rmu_ssc0000122.1_g000016 Rmu_ssc0000122.1_g000017
rosa_roxburghii	Rroxscaffold_3G00257420 Rroxscaffold_5G00383970 Rroxscaffold_5G00383980 Rroxscaffold_5G00384010
rosa_rugosa	Rorug04G0346000 Rorug04G0346100 Rorug04G0346200 Rorug04G0346400 Rorug05G0555800
rosa_samantha	Rh4AG154100 Rh4AG401500 Rh4AG401600 Rh4AG401700 Rh4AG401800 Rh4AG401900 Rh4BG412900 Rh4BG413100 Rh4BG413200 Rh4BG413300 Rh4CG162800 Rh4CG428600 Rh4CG428700 Rh4CG428800 Rh4CG428900 Rh4CG429000 Rh4DG408700 Rh4DG408800 Rh4DG408900 Rh4DG409000
rosa_wichuraiana	Rw4G004920 Rw4G034620 Rw4G034630 Rw4G034640 Rw4G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	224, 351
AciI	CCGC	5 cut(s)	167, 349, 351, 441, 451
AclWI	GGATC	2 cut(s)	144, 157
AcoI	YGGCCR	1 cut(s)	121
AfaI	GTAC	2 cut(s)	221, 280
AfiI	CCNNNNNNNGG	1 cut(s)	373
AflIII	ACRYGT	2 cut(s)	183, 222
AluBI	AGCT	2 cut(s)	8, 251
AluI	AGCT	2 cut(s)	8, 251
Alw21I	GWGCWC	2 cut(s)	253, 427
AlwI	GGATC	2 cut(s)	144, 157
AoxI	GGCC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	45
AvaII	GGWCC	1 cut(s)	45
BaeI	ACNNNNGTAYC	2 cut(s)	73, 106
BalI	TGGCCA	1 cut(s)	123
BamHI	GGATCC	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	253
Bbv12I	GWGCWC	2 cut(s)	253, 427
BccI	CCATC	3 cut(s)	266, 366, 412
BfmI	CTRYAG	1 cut(s)	232
BisI	GCNGC	2 cut(s)	168, 442
BlsI	GCNGC	2 cut(s)	169, 443
Bme18I	GGWCC	1 cut(s)	45
BmgT120I	GGNCC	1 cut(s)	45
BmiI	GGNNCC	1 cut(s)	151
BpmI	CTGGAG	2 cut(s)	192, 411
BpuEI	CTTGAG	2 cut(s)	18, 326
BsaBI	GATNNNNATC	1 cut(s)	154
BsaJI	CCNNGG	3 cut(s)	349, 367, 436
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse8I	GATNNNNATC	1 cut(s)	154
BseDI	CCNNGG	3 cut(s)	349, 367, 436
BseGI	GGATG	1 cut(s)	377
BseJI	GATNNNNATC	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMII	CTCAG	1 cut(s)	123
Bsh1236I	CGCG	2 cut(s)	224, 351
BshFI	GGCC	1 cut(s)	123
BsiHKAI	GWGCWC	2 cut(s)	253, 427
BslI	CCNNNNNNNGG	1 cut(s)	373
BsnI	GGCC	1 cut(s)	123
Bsp1286I	GDGCHC	2 cut(s)	253, 427
Bsp143I	GATC	2 cut(s)	142, 149
BspACI	CCGC	5 cut(s)	167, 349, 351, 441, 451
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	124
BspFNI	CGCG	2 cut(s)	224, 351
BspLI	GGNNCC	1 cut(s)	151
BspPI	GGATC	2 cut(s)	144, 157
BssECI	CCNNGG	3 cut(s)	349, 367, 436
BssMI	GATC	2 cut(s)	142, 149
BssT1I	CCWWGG	2 cut(s)	367, 436
Bst4CI	ACNGT	2 cut(s)	86, 335
BstDEI	CTNAG	1 cut(s)	132
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	1 cut(s)	377
BstFNI	CGCG	2 cut(s)	224, 351
BstKTI	GATC	2 cut(s)	145, 152
BstMBI	GATC	2 cut(s)	142, 149
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 383, 422, 450
BstNSI	RCATGY	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	232
BstUI	CGCG	2 cut(s)	224, 351
BstX2I	RGATCY	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	123
BtgI	CCRYGG	1 cut(s)	349
BtgZI	GCGATG	1 cut(s)	431
BtsCI	GGATG	1 cut(s)	377
Cfr13I	GGNCC	1 cut(s)	45
Cfr42I	CCGCGG	1 cut(s)	352
Csp6I	GTAC	2 cut(s)	220, 279
CviAII	CATG	5 cut(s)	17, 29, 108, 184, 445
CviJI	RGCY	8 cut(s)	8, 25, 54, 123, 170, 251, 366, 431
CviKI_1	RGCY	8 cut(s)	8, 25, 54, 123, 170, 251, 366, 431
CviQI	GTAC	2 cut(s)	220, 279
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	2 cut(s)	144, 151
DpnII	GATC	2 cut(s)	142, 149
EaeI	YGGCCR	1 cut(s)	121
Ecl136II	GAGCTC	1 cut(s)	251
Eco130I	CCWWGG	2 cut(s)	367, 436
Eco24I	GRGCYC	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	45
Eco53kI	GAGCTC	1 cut(s)	251
EcoICRI	GAGCTC	1 cut(s)	251
EcoT14I	CCWWGG	2 cut(s)	367, 436
EcoT38I	GRGCYC	1 cut(s)	253
ErhI	CCWWGG	2 cut(s)	367, 436
FaeI	CATG	5 cut(s)	20, 32, 111, 187, 448
FalI	AAGNNNNNCTT	1 cut(s)	29
FatI	CATG	5 cut(s)	16, 28, 107, 183, 444
Fnu4HI	GCNGC	2 cut(s)	168, 442
FokI	GGATG	1 cut(s)	384
FriOI	GRGCYC	1 cut(s)	253
Fsp4HI	GCNGC	2 cut(s)	168, 442
GluI	GCNGC	2 cut(s)	168, 442
GsuI	CTGGAG	2 cut(s)	192, 411
HaeIII	GGCC	1 cut(s)	123
Hin1II	CATG	5 cut(s)	20, 32, 111, 187, 448
Hpy166II	GTNNAC	2 cut(s)	48, 338
Hpy188I	TCNGA	1 cut(s)	73
Hpy8I	GTNNAC	2 cut(s)	48, 338
HpyAV	CCTTC	1 cut(s)	442
HpyCH4III	ACNGT	2 cut(s)	86, 335
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 383, 422, 450
HpyF3I	CTNAG	1 cut(s)	132
Hsp92II	CATG	5 cut(s)	20, 32, 111, 187, 448
KspI	CCGCGG	1 cut(s)	352
Kzo9I	GATC	2 cut(s)	142, 149
LmnI	GCTCC	2 cut(s)	173, 430
LpnPI	CCDG	4 cut(s)	36, 156, 363, 441
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	2 cut(s)	144, 151
MboI	GATC	2 cut(s)	142, 149
MflI	RGATCY	1 cut(s)	149
MhlI	GDGCHC	2 cut(s)	253, 427
MlsI	TGGCCA	1 cut(s)	123
MluI	ACGCGT	1 cut(s)	222
MluNI	TGGCCA	1 cut(s)	123
MnlI	CCTC	3 cut(s)	36, 140, 320
Mox20I	TGGCCA	1 cut(s)	123
MscI	TGGCCA	1 cut(s)	123
MseI	TTAA	3 cut(s)	197, 264, 291
Msp20I	TGGCCA	1 cut(s)	123
MspA1I	CMGCKG	1 cut(s)	351
MvnI	CGCG	2 cut(s)	224, 351
MwoI	GCNNNNNNNGC	4 cut(s)	173, 383, 422, 450
NdeII	GATC	2 cut(s)	142, 149
NlaIII	CATG	5 cut(s)	20, 32, 111, 187, 448
NlaIV	GGNNCC	1 cut(s)	151
NspI	RCATGY	1 cut(s)	187
PciI	ACATGT	1 cut(s)	183
PkrI	GCNGC	2 cut(s)	169, 443
PscI	ACATGT	1 cut(s)	183
Psp124BI	GAGCTC	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	151
PspPI	GGNCC	1 cut(s)	45
PsuI	RGATCY	1 cut(s)	149
RsaI	GTAC	2 cut(s)	221, 280
RsaNI	GTAC	2 cut(s)	220, 279
SacI	GAGCTC	1 cut(s)	253
SacII	CCGCGG	1 cut(s)	352
SaqAI	TTAA	3 cut(s)	197, 264, 291
SatI	GCNGC	2 cut(s)	168, 442
Sau3AI	GATC	2 cut(s)	142, 149
Sau96I	GGNCC	1 cut(s)	45
SduI	GDGCHC	2 cut(s)	253, 427
SetI	ASST	4 cut(s)	10, 253, 312, 409
SfcI	CTRYAG	1 cut(s)	232
Sfr303I	CCGCGG	1 cut(s)	352
SgrBI	CCGCGG	1 cut(s)	352
SinI	GGWCC	1 cut(s)	45
SmlI	CTYRAG	2 cut(s)	33, 341
SmoI	CTYRAG	2 cut(s)	33, 341
SsiI	CCGC	5 cut(s)	167, 349, 351, 441, 451
SspI	AATATT	1 cut(s)	262
SstI	GAGCTC	1 cut(s)	253
StyI	CCWWGG	2 cut(s)	367, 436
TaaI	ACNGT	2 cut(s)	86, 335
TaqI	TCGA	2 cut(s)	145, 357
TatI	WGTACW	1 cut(s)	278
TauI	GCSGC	2 cut(s)	170, 444
Tru1I	TTAA	3 cut(s)	197, 264, 291
Tru9I	TTAA	3 cut(s)	197, 264, 291
TspDTI	ATGAA	1 cut(s)	5
VpaK11BI	GGWCC	1 cut(s)	45
XceI	RCATGY	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.