RLG00000005930

Protein PLANT CADMIUM RESISTANCE 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000741
Physical Location & Seq
Forward (+)
2886137 .. 2887341
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005930

Sequence Viewer

Length: 609 bp
ATGTACTCGTCAAAGCCGAATTCGTACGAGAAGTTCTCGGAGTCCAACACCGATGCTGCTTCTCCGCCGACGGGTATTCCGGTCAGCTCCAGCAACCCTTACTTCAGTCATGATGATCATGATCATGACAACAGCTCCCAAATGCATGCTGCTCCGCCATACCACCCCCGCCCTAGAGCCCCCGAGCCGTGGAAGACCGGCCTCTGCGACTGCCTCTCCGATCCCAAAAACTGCTGCACAACATTTTGGTGCCCTTGTATCACTTTCGGCCAGATTGCAGAGATTGTGGATAAGGGCTCTACTTCTTGTGGTGCGAGTGGAGCACTATACACTCTGATATTTTGTGTGACTGGTTGTCCTTGCTTCTATTCATGCTTCTACCGTTCCAAAATGAGGCAGCAATACACTCTAGATGAGAGCCCTTGTGGTGATTGCTTGGTTCATTGCTTCTGCGAGTACTGCGCCCTGTGCCAGGAGTACCGTGAACTTCAAAATCGCGGTTTCGACATGGTTATCGGATGGCATGGAAATATCGAGGAAAGGAACCGTGAAGTGGCAATGAATCCAGTGCCCCCGGTCATGGAGGAAGGCATGAGTCGAGATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

203

Amino Acids

22.71

Weight (kDa)

5.05

Isoelectric Point (pI)

60.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 64 - 162 4.3e-35 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 249
AccII CGCG 1 cut(s) 498
AciI CCGC 4 cut(s) 65, 155, 169, 498
AclWI GGATC 1 cut(s) 215
AcoI YGGCCR 1 cut(s) 268
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 88
AfaI GTAC 4 cut(s) 5, 26, 458, 479
AfiI CCNNNNNNNGG 6 cut(s) 71, 189, 393, 472, 553, 580
AgsI TTSAA 1 cut(s) 491
AhdI GACNNNNNGTC 1 cut(s) 354
AjnI CCWGG 1 cut(s) 471
AluBI AGCT 2 cut(s) 87, 135
AluI AGCT 2 cut(s) 87, 135
Alw21I GWGCWC 1 cut(s) 325
AlwI GGATC 1 cut(s) 215
Ama87I CYCGRG 1 cut(s) 182
AoxI GGCC 2 cut(s) 199, 268
ApeKI GCWGC 4 cut(s) 56, 149, 234, 397
ApoI RAATTY 1 cut(s) 19
AspLEI GCGC 1 cut(s) 464
AsuC2I CCSGG 1 cut(s) 575
AsuHPI GGTGA 1 cut(s) 440
AvaI CYCGRG 1 cut(s) 182
BaeGI GKGCMC 2 cut(s) 254, 573
BanI GGYRCC 1 cut(s) 249
BanII GRGCYC 3 cut(s) 181, 299, 422
BbsI GAAGAC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 325
BbvI GCAGC 4 cut(s) 43, 136, 221, 409
BccI CCATC 1 cut(s) 513
BceAI ACGGC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 473
BclI TGATCA 2 cut(s) 115, 121
BcnI CCSGG 1 cut(s) 575
BfaI CTAG 2 cut(s) 174, 410
BisI GCNGC 4 cut(s) 57, 150, 235, 398
BlsI GCNGC 4 cut(s) 58, 151, 236, 399
BmcAI AGTACT 1 cut(s) 458
Bme1390I CCNGG 2 cut(s) 473, 575
BmeRI GACNNNNNGTC 1 cut(s) 354
BmeT110I CYCGRG 1 cut(s) 182
BmiI GGNNCC 2 cut(s) 251, 545
BmrFI CCNGG 2 cut(s) 473, 575
BmsI GCATC 1 cut(s) 43
BpiI GAAGAC 1 cut(s) 200
BplI GAGNNNNNCTC 2 cut(s) 20, 52
BpmI CTGGAG 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 575
BsaBI GATNNNNATC 1 cut(s) 120
BsaJI CCNNGG 2 cut(s) 188, 573
BsaWI WCCGGW 1 cut(s) 79
BsaXI ACNNNNNCTCC 4 cut(s) 119, 149, 200, 230
Bsc4I CCNNNNNNNGG 6 cut(s) 71, 189, 393, 472, 553, 580
Bse118I RCCGGY 1 cut(s) 197
Bse1I ACTGG 2 cut(s) 355, 566
Bse3DI GCAATG 2 cut(s) 442, 564
Bse8I GATNNNNATC 1 cut(s) 120
BseBI CCWGG 1 cut(s) 473
BseDI CCNNGG 2 cut(s) 188, 573
BseGI GGATG 1 cut(s) 524
BseJI GATNNNNATC 1 cut(s) 120
BseLI CCNNNNNNNGG 6 cut(s) 71, 189, 393, 472, 553, 580
BseMI GCAATG 2 cut(s) 442, 564
BseNI ACTGG 2 cut(s) 355, 566
BseSI GKGCMC 2 cut(s) 254, 573
BseXI GCAGC 4 cut(s) 43, 136, 221, 409
BsgI GTGCAG 1 cut(s) 220
Bsh1236I CGCG 1 cut(s) 498
BshFI GGCC 2 cut(s) 201, 270
BshNI GGYRCC 1 cut(s) 249
BsiHKAI GWGCWC 1 cut(s) 325
BsiHKCI CYCGRG 1 cut(s) 182
BsiSI CCGG 3 cut(s) 80, 198, 575
BsiWI CGTACG 1 cut(s) 24
BslI CCNNNNNNNGG 6 cut(s) 71, 189, 393, 472, 553, 580
BsnI GGCC 2 cut(s) 201, 270
BsoBI CYCGRG 1 cut(s) 182
Bsp1286I GDGCHC 6 cut(s) 181, 254, 299, 325, 422, 573
Bsp143I GATC 4 cut(s) 115, 121, 220, 601
BspACI CCGC 4 cut(s) 65, 155, 169, 498
BspANI GGCC 2 cut(s) 201, 270
BspFNI CGCG 1 cut(s) 498
BspHI TCATGA 3 cut(s) 109, 118, 124
BspLI GGNNCC 2 cut(s) 251, 545
BspPI GGATC 1 cut(s) 215
BspT107I GGYRCC 1 cut(s) 249
BsrDI GCAATG 2 cut(s) 442, 564
BsrFI RCCGGY 1 cut(s) 197
BsrI ACTGG 2 cut(s) 355, 566
BssAI RCCGGY 1 cut(s) 197
BssECI CCNNGG 2 cut(s) 188, 573
BssMI GATC 4 cut(s) 115, 121, 220, 601
Bst2UI CCWGG 1 cut(s) 473
Bst4CI ACNGT 3 cut(s) 383, 482, 548
BstC8I GCNNGC 1 cut(s) 147
BstDSI CCRYGG 1 cut(s) 188
BstENI CCTNNNNNAGG 1 cut(s) 470
BstF5I GGATG 1 cut(s) 524
BstFNI CGCG 1 cut(s) 498
BstHHI GCGC 1 cut(s) 464
BstKTI GATC 4 cut(s) 118, 124, 223, 604
BstMBI GATC 4 cut(s) 115, 121, 220, 601
BstMWI GCNNNNNNNGC 3 cut(s) 320, 459, 468
BstNI CCWGG 1 cut(s) 473
BstNSI RCATGY 1 cut(s) 149
BstSCI CCNGG 2 cut(s) 471, 573
BstSLI GKGCMC 2 cut(s) 254, 573
BstUI CGCG 1 cut(s) 498
BstV1I GCAGC 4 cut(s) 43, 136, 221, 409
BstV2I GAAGAC 1 cut(s) 200
BsuRI GGCC 2 cut(s) 201, 270
BtgI CCRYGG 1 cut(s) 188
BtsCI GGATG 1 cut(s) 524
BtsIMutI CAGTG 1 cut(s) 573
Cac8I GCNNGC 1 cut(s) 147
CciI TCATGA 3 cut(s) 109, 118, 124
CfoI GCGC 1 cut(s) 464
Cfr10I RCCGGY 1 cut(s) 197
Csp6I GTAC 4 cut(s) 4, 25, 457, 478
CviAII CATG 9 cut(s) 110, 119, 125, 146, 372, 508, 524, 580, 592
CviJI RGCY 9 cut(s) 16, 87, 135, 179, 187, 201, 270, 297, 420
CviKI_1 RGCY 9 cut(s) 16, 87, 135, 179, 187, 201, 270, 297, 420
CviQI GTAC 4 cut(s) 4, 25, 457, 478
DpnI GATC 4 cut(s) 117, 123, 222, 603
DpnII GATC 4 cut(s) 115, 121, 220, 601
DriI GACNNNNNGTC 1 cut(s) 354
EaeI YGGCCR 1 cut(s) 268
Eam1105I GACNNNNNGTC 1 cut(s) 354
EciI GGCGGA 2 cut(s) 54, 144
Eco24I GRGCYC 3 cut(s) 181, 299, 422
Eco57I CTGAAG 1 cut(s) 88
Eco88I CYCGRG 1 cut(s) 182
EcoNI CCTNNNNNAGG 1 cut(s) 470
EcoRI GAATTC 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 471
EcoT22I ATGCAT 1 cut(s) 147
EcoT38I GRGCYC 3 cut(s) 181, 299, 422
FaeI CATG 9 cut(s) 113, 122, 128, 149, 375, 511, 527, 583, 595
FatI CATG 9 cut(s) 109, 118, 124, 145, 371, 507, 523, 579, 591
FauI CCCGC 1 cut(s) 176
FbaI TGATCA 2 cut(s) 115, 121
Fnu4HI GCNGC 4 cut(s) 57, 150, 235, 398
FokI GGATG 1 cut(s) 531
FriOI GRGCYC 3 cut(s) 181, 299, 422
Fsp4HI GCNGC 4 cut(s) 57, 150, 235, 398
FspBI CTAG 2 cut(s) 174, 410
GlaI GCGC 1 cut(s) 463
GluI GCNGC 4 cut(s) 57, 150, 235, 398
GsuI CTGGAG 1 cut(s) 73
HaeIII GGCC 2 cut(s) 201, 270
HapII CCGG 3 cut(s) 80, 198, 575
HhaI GCGC 1 cut(s) 464
Hin1II CATG 9 cut(s) 113, 122, 128, 149, 375, 511, 527, 583, 595
Hin6I GCGC 1 cut(s) 462
HinP1I GCGC 1 cut(s) 462
HinfI GANTC 3 cut(s) 41, 562, 595
HpaII CCGG 3 cut(s) 80, 198, 575
HphI GGTGA 1 cut(s) 440
Hpy166II GTNNAC 1 cut(s) 485
Hpy188I TCNGA 4 cut(s) 40, 220, 336, 518
Hpy188III TCNNGA 5 cut(s) 110, 119, 125, 410, 599
Hpy8I GTNNAC 1 cut(s) 485
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 581
HpyCH4III ACNGT 3 cut(s) 383, 482, 548
HpyCH4V TGCA 3 cut(s) 145, 237, 278
HpyF10VI GCNNNNNNNGC 3 cut(s) 320, 459, 468
Hsp92II CATG 9 cut(s) 113, 122, 128, 149, 375, 511, 527, 583, 595
HspAI GCGC 1 cut(s) 462
Ksp22I TGATCA 2 cut(s) 115, 121
Kzo9I GATC 4 cut(s) 115, 121, 220, 601
LmnI GCTCC 4 cut(s) 92, 140, 157, 320
Lsp1109I GCAGC 4 cut(s) 43, 136, 221, 409
LweI GCATC 1 cut(s) 43
MaeI CTAG 2 cut(s) 174, 410
MaeIII GTNAC 1 cut(s) 346
MalI GATC 4 cut(s) 117, 123, 222, 603
MboI GATC 4 cut(s) 115, 121, 220, 601
MboII GAAGA 1 cut(s) 205
MhlI GDGCHC 6 cut(s) 181, 254, 299, 325, 422, 573
MluCI AATT 1 cut(s) 19
MlyI GAGTC 2 cut(s) 50, 604
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 5 cut(s) 212, 224, 387, 529, 577
Mph1103I ATGCAT 1 cut(s) 147
MslI CAYNNNNRTG 2 cut(s) 123, 247
MspI CCGG 3 cut(s) 80, 198, 575
MspR9I CCNGG 2 cut(s) 473, 575
MvaI CCWGG 1 cut(s) 473
MvnI CGCG 1 cut(s) 498
MwoI GCNNNNNNNGC 3 cut(s) 320, 459, 468
NciI CCSGG 1 cut(s) 575
NdeII GATC 4 cut(s) 115, 121, 220, 601
NlaIII CATG 9 cut(s) 113, 122, 128, 149, 375, 511, 527, 583, 595
NlaIV GGNNCC 2 cut(s) 251, 545
NmuCI GTSAC 1 cut(s) 346
NsiI ATGCAT 1 cut(s) 147
NspI RCATGY 1 cut(s) 149
PaeI GCATGC 1 cut(s) 149
PagI TCATGA 3 cut(s) 109, 118, 124
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PfeI GAWTC 1 cut(s) 562
Pfl23II CGTACG 1 cut(s) 24
PkrI GCNGC 4 cut(s) 58, 151, 236, 399
PleI GAGTC 2 cut(s) 49, 603
PpsI GAGTC 2 cut(s) 49, 603
Psp6I CCWGG 1 cut(s) 471
PspGI CCWGG 1 cut(s) 471
PspLI CGTACG 1 cut(s) 24
PspN4I GGNNCC 2 cut(s) 251, 545
PsrI GAACNNNNNNTAC 2 cut(s) 17, 49
RsaI GTAC 4 cut(s) 5, 26, 458, 479
RsaNI GTAC 4 cut(s) 4, 25, 457, 478
RseI CAYNNNNRTG 2 cut(s) 123, 247
SatI GCNGC 4 cut(s) 57, 150, 235, 398
Sau3AI GATC 4 cut(s) 115, 121, 220, 601
ScaI AGTACT 1 cut(s) 458
SchI GAGTC 2 cut(s) 50, 604
ScrFI CCNGG 2 cut(s) 473, 575
SduI GDGCHC 6 cut(s) 181, 254, 299, 325, 422, 573
SetI ASST 2 cut(s) 89, 137
SfaNI GCATC 1 cut(s) 43
SmiMI CAYNNNNRTG 2 cut(s) 123, 247
SphI GCATGC 1 cut(s) 149
Sse9I AATT 1 cut(s) 19
SsiI CCGC 4 cut(s) 65, 155, 169, 498
SspMI CTAG 2 cut(s) 174, 410
StyD4I CCNGG 2 cut(s) 471, 573
TaaI ACNGT 3 cut(s) 383, 482, 548
TaqI TCGA 3 cut(s) 504, 534, 598
TasI AATT 1 cut(s) 19
TatI WGTACW 2 cut(s) 3, 456
TfiI GAWTC 1 cut(s) 562
TscAI CASTG 1 cut(s) 573
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 4 cut(s) 56, 149, 234, 397
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 3 cut(s) 360, 431, 575
TspRI CASTG 1 cut(s) 573
XagI CCTNNNNNAGG 1 cut(s) 470
XapI RAATTY 1 cut(s) 19
XbaI TCTAGA 1 cut(s) 409
XceI RCATGY 1 cut(s) 149
XspI CTAG 2 cut(s) 174, 410
ZrmI AGTACT 1 cut(s) 458
Zsp2I ATGCAT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.