RchiOBHm_Chr5g0070111

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000741
Physical Location & Seq
Forward (+)
75942432 .. 75943489
1058 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34539

Sequence Viewer

Length: 267 bp
ATGGTTCCTCTTTTCATTGCAGTTTTCACCGAAAGGCTAGAGTCGACATCGGTGGAGAGGATTGCAGATCATGACAAAGTAATGTTTTATTTTATTAAGTCTTTGGTTTTTAGTTTTTGGCTGGGTATAATAAGTCTCTACTCATTTGAGCTAGGGTATTGGTGTCTTGGTCTTGTCGTTGTGCCATTATTATGGTGTTGTTCCCGGGAACTATGTGATCTAATTTCGGTGCCTTATGGTTGTCAACATGGTGCCTTATGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

10.19

Weight (kDa)

5.08

Isoelectric Point (pI)

28.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 229, 251
AccI GTMKAC 1 cut(s) 44
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
Alw26I GTCTC 1 cut(s) 140
Ama87I CYCGRG 1 cut(s) 204
AsuC2I CCSGG 2 cut(s) 205, 206
AsuHPI GGTGA 1 cut(s) 19
AvaI CYCGRG 1 cut(s) 204
BanI GGYRCC 2 cut(s) 229, 251
BcnI CCSGG 2 cut(s) 205, 206
BcoDI GTCTC 1 cut(s) 140
BfaI CTAG 2 cut(s) 38, 152
Bme1390I CCNGG 2 cut(s) 205, 206
BmeT110I CYCGRG 1 cut(s) 204
BmiI GGNNCC 3 cut(s) 6, 231, 253
BmrFI CCNGG 2 cut(s) 205, 206
BpuMI CCSGG 2 cut(s) 205, 206
BsaJI CCNNGG 1 cut(s) 204
Bse3DI GCAATG 1 cut(s) 15
BseDI CCNNGG 1 cut(s) 204
BseMI GCAATG 1 cut(s) 15
BseYI CCCAGC 1 cut(s) 121
BshNI GGYRCC 2 cut(s) 229, 251
BsiHKCI CYCGRG 1 cut(s) 204
BsiSI CCGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 140
BsoBI CYCGRG 1 cut(s) 204
Bsp143I GATC 2 cut(s) 67, 217
BspHI TCATGA 1 cut(s) 70
BspLI GGNNCC 3 cut(s) 6, 231, 253
BspT107I GGYRCC 2 cut(s) 229, 251
BsrDI GCAATG 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 2 cut(s) 67, 217
BstKTI GATC 2 cut(s) 70, 220
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 2 cut(s) 67, 217
BstSCI CCNGG 2 cut(s) 203, 204
BstXI CCANNNNNNTGG 1 cut(s) 192
CciI TCATGA 1 cut(s) 70
Cfr9I CCCGGG 1 cut(s) 204
CviAII CATG 2 cut(s) 71, 248
CviJI RGCY 3 cut(s) 37, 121, 151
CviKI_1 RGCY 3 cut(s) 37, 121, 151
DpnI GATC 2 cut(s) 69, 219
DpnII GATC 2 cut(s) 67, 217
Eco88I CYCGRG 1 cut(s) 204
FaeI CATG 2 cut(s) 74, 251
FaiI YATR 7 cut(s) 72, 128, 193, 214, 237, 249, 259
FatI CATG 2 cut(s) 70, 247
FblI GTMKAC 1 cut(s) 44
FspBI CTAG 2 cut(s) 38, 152
GsaI CCCAGC 1 cut(s) 125
HapII CCGG 1 cut(s) 205
Hin1II CATG 2 cut(s) 74, 251
HincII GTYRAC 2 cut(s) 45, 245
HindII GTYRAC 2 cut(s) 45, 245
HinfI GANTC 1 cut(s) 41
HpaII CCGG 1 cut(s) 205
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 2 cut(s) 45, 245
Hpy188III TCNNGA 1 cut(s) 71
Hpy8I GTNNAC 2 cut(s) 45, 245
HpyCH4V TGCA 2 cut(s) 20, 65
Hsp92II CATG 2 cut(s) 74, 251
Kzo9I GATC 2 cut(s) 67, 217
LpnPI CCDG 2 cut(s) 107, 218
MaeI CTAG 2 cut(s) 38, 152
MalI GATC 2 cut(s) 69, 219
MboI GATC 2 cut(s) 67, 217
MluCI AATT 1 cut(s) 222
MlyI GAGTC 1 cut(s) 50
MnlI CCTC 2 cut(s) 18, 51
MseI TTAA 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 190
MspI CCGG 1 cut(s) 205
MspR9I CCNGG 2 cut(s) 205, 206
NciI CCSGG 2 cut(s) 205, 206
NdeII GATC 2 cut(s) 67, 217
NlaIII CATG 2 cut(s) 74, 251
NlaIV GGNNCC 3 cut(s) 6, 231, 253
PagI TCATGA 1 cut(s) 70
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PspFI CCCAGC 1 cut(s) 121
PspN4I GGNNCC 3 cut(s) 6, 231, 253
RseI CAYNNNNRTG 1 cut(s) 190
SalI GTCGAC 1 cut(s) 43
SaqAI TTAA 1 cut(s) 96
Sau3AI GATC 2 cut(s) 67, 217
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 2 cut(s) 205, 206
SetI ASST 1 cut(s) 153
SmaI CCCGGG 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 190
Sse9I AATT 1 cut(s) 222
SspMI CTAG 2 cut(s) 38, 152
StyD4I CCNGG 2 cut(s) 203, 204
TaqI TCGA 1 cut(s) 44
TasI AATT 1 cut(s) 222
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TspDTI ATGAA 1 cut(s) 4
TspMI CCCGGG 1 cut(s) 204
XmaI CCCGGG 1 cut(s) 204
XmiI GTMKAC 1 cut(s) 44
XspI CTAG 2 cut(s) 38, 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.