Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000741

Physical Location & Seq

Genomic Coordinates Reverse (-)

62101218 .. 62102429

Gene Structure 1212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG408700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTACTCGTCAAAGCCGAAATCGTACGAGAAGTTCTCGGAGTCCAACACCGATGCTGCTTCTCCGCCGACGGGTGTTCCGGTCAGCTCCAGCAACCCTTACTTCAGTCATGATGATCATGATCATGAAAACAGCTCCCAAATGCCGGTTGCTCCGCCATACCACCTCCGCCCTAGAGCCCCCGAGCCGTGGAAGACCGGCCTCTGCGACTGCCTCTCGCATCCCAAAAACTGCTGCACAACATTTTGGTGCCCCTGTATCACTTTCGGCCAGATTGCAGAGATTGTGGATAAGGGCTCTACTTCTTGTGGTGCAAGTGGAGCACTATACACTCTGATATTTTGTGTGACTGGTTGTCCTTGCTTCTATTCATGCTTCTACCGTTCCAAAATGAGGCAGCAATACACTCTTGATGAGAGCCCTTGTGGTGATTGCTTGGTTCATTGCTTCTGCGAGTACTGCGCCCTGTGCCAGGAGTACCGTGAGCTTCAAAATCGCGGTTTCGACATGGTTATCGGATGGCATGGAAATATCGAGGAAAGGAACCGTGAAGTGGCAATGAATCCAGTGCCCCCGGTCATGGAGGAAGGCATGAGTAGAGATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

202

Amino Acids

22.75

Weight (kDa)

5.31

Isoelectric Point (pI)

63.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAC8	PF04749	64 - 162	2e-34	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14870 AT1G14870 AT1G14880 AT5G35525
fragaria_vesca	FvH4_4g33890 FvH4_4g33900 FvH4_4g33900 FvH4_4g33930 FvH4_4g34200
malus_domestica	MD16G1021300.v1.1 MD16G1021400.v1.1
prunus_persica	Prupe.1G331100_v2.0.a1
pyrus_communis	pycom13g01870 pycom16g01900 pycom16g01910
rosa_chinensis	RchiOBHm_Chr0c23g0500741 RchiOBHm_Chr4g0409091 RchiOBHm_Chr4g0443411 RchiOBHm_Chr4g0443421 RchiOBHm_Chr4g0443431 RchiOBHm_Chr4g0443441 RchiOBHm_Chr4g0443451 RchiOBHm_Chr4g0443461 RchiOBHm_Chr5g0070111
rosa_laevigata	RLG00000005927 RLG00000005928 RLG00000005929 RLG00000005930 RLG00000019779
rosa_multiflora	Rmu_co8363857.1_g000001 Rmu_co8469801.1_g000001 Rmu_sc0001669.1_g000019 Rmu_sc0004836.1_g000022 Rmu_sc0004849.1_g000015 Rmu_sc0009670.1_g000002 Rmu_ssc0000122.1_g000016 Rmu_ssc0000122.1_g000017
rosa_roxburghii	Rroxscaffold_3G00257420 Rroxscaffold_5G00383970 Rroxscaffold_5G00383980 Rroxscaffold_5G00384010
rosa_rugosa	Rorug04G0346000 Rorug04G0346100 Rorug04G0346200 Rorug04G0346400 Rorug05G0555800
rosa_samantha	Rh4AG154100 Rh4AG401500 Rh4AG401600 Rh4AG401700 Rh4AG401800 Rh4AG401900 Rh4BG412900 Rh4BG413100 Rh4BG413200 Rh4BG413300 Rh4CG162800 Rh4CG428600 Rh4CG428700 Rh4CG428800 Rh4CG428900 Rh4CG429000 Rh4DG408700 Rh4DG408800 Rh4DG408900 Rh4DG409000
rosa_wichuraiana	Rw4G004920 Rw4G034620 Rw4G034630 Rw4G034640 Rw4G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	249
AccII	CGCG	1 cut(s)	498
AciI	CCGC	4 cut(s)	65, 155, 169, 498
AcoI	YGGCCR	1 cut(s)	268
AcuI	CTGAAG	1 cut(s)	88
AfaI	GTAC	4 cut(s)	5, 26, 458, 479
AfiI	CCNNNNNNNGG	7 cut(s)	71, 145, 189, 393, 472, 553, 580
AgsI	TTSAA	1 cut(s)	491
AhdI	GACNNNNNGTC	1 cut(s)	354
AjnI	CCWGG	1 cut(s)	471
AluBI	AGCT	3 cut(s)	87, 135, 487
AluI	AGCT	3 cut(s)	87, 135, 487
Alw21I	GWGCWC	1 cut(s)	325
Ama87I	CYCGRG	1 cut(s)	182
AoxI	GGCC	2 cut(s)	199, 268
ApeKI	GCWGC	3 cut(s)	56, 234, 397
AspLEI	GCGC	1 cut(s)	464
AsuC2I	CCSGG	1 cut(s)	575
AsuHPI	GGTGA	1 cut(s)	440
AvaI	CYCGRG	1 cut(s)	182
BaeGI	GKGCMC	2 cut(s)	254, 573
BanI	GGYRCC	1 cut(s)	249
BanII	GRGCYC	3 cut(s)	181, 299, 422
BbsI	GAAGAC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	3 cut(s)	43, 221, 409
BccI	CCATC	1 cut(s)	513
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	473
BclI	TGATCA	2 cut(s)	115, 121
BcnI	CCSGG	1 cut(s)	575
BfaI	CTAG	1 cut(s)	174
BisI	GCNGC	3 cut(s)	57, 235, 398
BlsI	GCNGC	3 cut(s)	58, 236, 399
BmcAI	AGTACT	1 cut(s)	458
Bme1390I	CCNGG	2 cut(s)	473, 575
BmeRI	GACNNNNNGTC	1 cut(s)	354
BmeT110I	CYCGRG	1 cut(s)	182
BmiI	GGNNCC	2 cut(s)	251, 545
BmrFI	CCNGG	2 cut(s)	473, 575
BmsI	GCATC	2 cut(s)	43, 229
BpiI	GAAGAC	1 cut(s)	200
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	1 cut(s)	73
BpuMI	CCSGG	1 cut(s)	575
BsaBI	GATNNNNATC	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	188, 573
BsaWI	WCCGGW	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	7 cut(s)	71, 145, 189, 393, 472, 553, 580
Bse118I	RCCGGY	2 cut(s)	145, 197
Bse1I	ACTGG	2 cut(s)	355, 566
Bse3DI	GCAATG	2 cut(s)	442, 564
Bse8I	GATNNNNATC	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	473
BseDI	CCNNGG	2 cut(s)	188, 573
BseGI	GGATG	2 cut(s)	220, 524
BseJI	GATNNNNATC	1 cut(s)	120
BseLI	CCNNNNNNNGG	7 cut(s)	71, 145, 189, 393, 472, 553, 580
BseMI	GCAATG	2 cut(s)	442, 564
BseNI	ACTGG	2 cut(s)	355, 566
BseSI	GKGCMC	2 cut(s)	254, 573
BseXI	GCAGC	3 cut(s)	43, 221, 409
BsgI	GTGCAG	1 cut(s)	220
Bsh1236I	CGCG	1 cut(s)	498
BshFI	GGCC	2 cut(s)	201, 270
BshNI	GGYRCC	1 cut(s)	249
BsiHKAI	GWGCWC	1 cut(s)	325
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	4 cut(s)	80, 146, 198, 575
BsiWI	CGTACG	1 cut(s)	24
BslI	CCNNNNNNNGG	7 cut(s)	71, 145, 189, 393, 472, 553, 580
BsnI	GGCC	2 cut(s)	201, 270
BsoBI	CYCGRG	1 cut(s)	182
Bsp1286I	GDGCHC	6 cut(s)	181, 254, 299, 325, 422, 573
Bsp143I	GATC	3 cut(s)	115, 121, 601
BspACI	CCGC	4 cut(s)	65, 155, 169, 498
BspANI	GGCC	2 cut(s)	201, 270
BspFNI	CGCG	1 cut(s)	498
BspHI	TCATGA	3 cut(s)	109, 118, 124
BspLI	GGNNCC	2 cut(s)	251, 545
BspT107I	GGYRCC	1 cut(s)	249
BsrDI	GCAATG	2 cut(s)	442, 564
BsrFI	RCCGGY	2 cut(s)	145, 197
BsrI	ACTGG	2 cut(s)	355, 566
BssAI	RCCGGY	2 cut(s)	145, 197
BssECI	CCNNGG	2 cut(s)	188, 573
BssMI	GATC	3 cut(s)	115, 121, 601
Bst2UI	CCWGG	1 cut(s)	473
Bst4CI	ACNGT	3 cut(s)	383, 482, 548
BstDSI	CCRYGG	1 cut(s)	188
BstENI	CCTNNNNNAGG	1 cut(s)	470
BstF5I	GGATG	2 cut(s)	220, 524
BstFNI	CGCG	1 cut(s)	498
BstHHI	GCGC	1 cut(s)	464
BstKTI	GATC	3 cut(s)	118, 124, 604
BstMBI	GATC	3 cut(s)	115, 121, 601
BstMWI	GCNNNNNNNGC	3 cut(s)	320, 459, 468
BstNI	CCWGG	1 cut(s)	473
BstSCI	CCNGG	2 cut(s)	471, 573
BstSLI	GKGCMC	2 cut(s)	254, 573
BstUI	CGCG	1 cut(s)	498
BstV1I	GCAGC	3 cut(s)	43, 221, 409
BstV2I	GAAGAC	1 cut(s)	200
BsuRI	GGCC	2 cut(s)	201, 270
BtgI	CCRYGG	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	220, 524
BtsIMutI	CAGTG	1 cut(s)	573
CciI	TCATGA	3 cut(s)	109, 118, 124
CfoI	GCGC	1 cut(s)	464
Cfr10I	RCCGGY	2 cut(s)	145, 197
Csp6I	GTAC	4 cut(s)	4, 25, 457, 478
CviAII	CATG	8 cut(s)	110, 119, 125, 372, 508, 524, 580, 592
CviQI	GTAC	4 cut(s)	4, 25, 457, 478
DpnI	GATC	3 cut(s)	117, 123, 603
DpnII	GATC	3 cut(s)	115, 121, 601
DriI	GACNNNNNGTC	1 cut(s)	354
EaeI	YGGCCR	1 cut(s)	268
Eam1105I	GACNNNNNGTC	1 cut(s)	354
EciI	GGCGGA	3 cut(s)	54, 144, 158
Eco24I	GRGCYC	3 cut(s)	181, 299, 422
Eco57I	CTGAAG	1 cut(s)	88
Eco88I	CYCGRG	1 cut(s)	182
EcoNI	CCTNNNNNAGG	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	471
EcoT38I	GRGCYC	3 cut(s)	181, 299, 422
FaeI	CATG	8 cut(s)	113, 122, 128, 375, 511, 527, 583, 595
FatI	CATG	8 cut(s)	109, 118, 124, 371, 507, 523, 579, 591
FbaI	TGATCA	2 cut(s)	115, 121
Fnu4HI	GCNGC	3 cut(s)	57, 235, 398
FokI	GGATG	2 cut(s)	207, 531
FriOI	GRGCYC	3 cut(s)	181, 299, 422
Fsp4HI	GCNGC	3 cut(s)	57, 235, 398
FspBI	CTAG	1 cut(s)	174
GlaI	GCGC	1 cut(s)	463
GluI	GCNGC	3 cut(s)	57, 235, 398
GsuI	CTGGAG	1 cut(s)	73
HaeIII	GGCC	2 cut(s)	201, 270
HapII	CCGG	4 cut(s)	80, 146, 198, 575
HhaI	GCGC	1 cut(s)	464
Hin1II	CATG	8 cut(s)	113, 122, 128, 375, 511, 527, 583, 595
Hin6I	GCGC	1 cut(s)	462
HinP1I	GCGC	1 cut(s)	462
HinfI	GANTC	2 cut(s)	41, 562
HpaII	CCGG	4 cut(s)	80, 146, 198, 575
HphI	GGTGA	1 cut(s)	440
Hpy188I	TCNGA	3 cut(s)	40, 336, 518
Hpy188III	TCNNGA	4 cut(s)	110, 119, 125, 410
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	581
HpyCH4III	ACNGT	3 cut(s)	383, 482, 548
HpyCH4V	TGCA	3 cut(s)	237, 278, 314
HpyF10VI	GCNNNNNNNGC	3 cut(s)	320, 459, 468
Hsp92II	CATG	8 cut(s)	113, 122, 128, 375, 511, 527, 583, 595
HspAI	GCGC	1 cut(s)	462
Ksp22I	TGATCA	2 cut(s)	115, 121
Kzo9I	GATC	3 cut(s)	115, 121, 601
LmnI	GCTCC	4 cut(s)	92, 140, 157, 320
Lsp1109I	GCAGC	3 cut(s)	43, 221, 409
LweI	GCATC	2 cut(s)	43, 229
MaeI	CTAG	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	3 cut(s)	117, 123, 603
MboI	GATC	3 cut(s)	115, 121, 601
MboII	GAAGA	1 cut(s)	205
MhlI	GDGCHC	6 cut(s)	181, 254, 299, 325, 422, 573
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	6 cut(s)	176, 212, 224, 387, 529, 577
MslI	CAYNNNNRTG	2 cut(s)	123, 247
MspI	CCGG	4 cut(s)	80, 146, 198, 575
MspR9I	CCNGG	2 cut(s)	473, 575
MvaI	CCWGG	1 cut(s)	473
MvnI	CGCG	1 cut(s)	498
MwoI	GCNNNNNNNGC	3 cut(s)	320, 459, 468
NciI	CCSGG	1 cut(s)	575
NdeII	GATC	3 cut(s)	115, 121, 601
NlaIII	CATG	8 cut(s)	113, 122, 128, 375, 511, 527, 583, 595
NlaIV	GGNNCC	2 cut(s)	251, 545
NmuCI	GTSAC	1 cut(s)	346
PagI	TCATGA	3 cut(s)	109, 118, 124
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	562
Pfl23II	CGTACG	1 cut(s)	24
PkrI	GCNGC	3 cut(s)	58, 236, 399
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	471
PspGI	CCWGG	1 cut(s)	471
PspLI	CGTACG	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	251, 545
PsrI	GAACNNNNNNTAC	2 cut(s)	17, 49
RsaI	GTAC	4 cut(s)	5, 26, 458, 479
RsaNI	GTAC	4 cut(s)	4, 25, 457, 478
RseI	CAYNNNNRTG	2 cut(s)	123, 247
SatI	GCNGC	3 cut(s)	57, 235, 398
Sau3AI	GATC	3 cut(s)	115, 121, 601
ScaI	AGTACT	1 cut(s)	458
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	473, 575
SduI	GDGCHC	6 cut(s)	181, 254, 299, 325, 422, 573
SetI	ASST	4 cut(s)	89, 137, 168, 489
SfaNI	GCATC	2 cut(s)	43, 229
SmiMI	CAYNNNNRTG	2 cut(s)	123, 247
SsiI	CCGC	4 cut(s)	65, 155, 169, 498
SspMI	CTAG	1 cut(s)	174
StyD4I	CCNGG	2 cut(s)	471, 573
TaaI	ACNGT	3 cut(s)	383, 482, 548
TaqI	TCGA	2 cut(s)	504, 534
TatI	WGTACW	2 cut(s)	3, 456
TfiI	GAWTC	1 cut(s)	562
TscAI	CASTG	1 cut(s)	573
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	3 cut(s)	56, 234, 397
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	4 cut(s)	141, 360, 431, 575
TspRI	CASTG	1 cut(s)	573
XagI	CCTNNNNNAGG	1 cut(s)	470
XspI	CTAG	1 cut(s)	174
ZrmI	AGTACT	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.