Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0000741

Physical Location & Seq

Genomic Coordinates Reverse (-)

1258892 .. 1260233

Gene Structure 1342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g01870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTACTCGTCACACCCAAGGGGATACGAGAAGTACTCCTCGTCCGACCCCCAGCACCACCACCATCACCACCAAGATGCCCCGCCGGCGCCGACAGGTATCCCGGTCAGCTCCAGCACTGAACCTTATTTTACTACTTCTAACGAAGACATGAGCTCGCACAGTGGCCACTCCCACATGACCCACCCCCCATCCCGTCTCCGCCCTCGTGCTCTCATCCCTTGGTCCACCGGCCTCTGCGACTGCTTCTCCGATTTCAAAAACTGTTGCATAACACTTTGGTGTCCATGCATCACCTTTGGCCAAATTGCAGAGATTGTGGATAAGGGTTCTACATCTTGTGGTGCCAGTGGAGCGCTGTACACACTTATTACTTGTGTGACAGCTTGTCCATGCTGCTATTCATGCTTCTACCGCTCCAAAATGAGACAGCAATACAGCTTGGAAGAGAGCCCTTGTGGGGACTGCTTGGTTCATTGCTTCTGTGAGCACTGCGCCTTGTGCCAAGAGTACCGTGAGCTCAAGTTTCGCGGTTTCGACTTGAAACTTGGATGGCATGGAAATATCGAGGAAAGGAACCGTGAAGGAGTTGCAATGAATCCGATGGCTCCGGTGGTGGAGGAAGGCATGAGTCGAGATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

215

Amino Acids

24.04

Weight (kDa)

6.25

Isoelectric Point (pI)

54.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAC8	PF04749	75 - 173	3.3e-35	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14870 AT1G14870 AT1G14880 AT5G35525
fragaria_vesca	FvH4_4g33890 FvH4_4g33900 FvH4_4g33900 FvH4_4g33930 FvH4_4g34200
malus_domestica	MD16G1021300.v1.1 MD16G1021400.v1.1
prunus_persica	Prupe.1G331100_v2.0.a1
pyrus_communis	pycom13g01870 pycom16g01900 pycom16g01910
rosa_chinensis	RchiOBHm_Chr0c23g0500741 RchiOBHm_Chr4g0409091 RchiOBHm_Chr4g0443411 RchiOBHm_Chr4g0443421 RchiOBHm_Chr4g0443431 RchiOBHm_Chr4g0443441 RchiOBHm_Chr4g0443451 RchiOBHm_Chr4g0443461 RchiOBHm_Chr5g0070111
rosa_laevigata	RLG00000005927 RLG00000005928 RLG00000005929 RLG00000005930 RLG00000019779
rosa_multiflora	Rmu_co8363857.1_g000001 Rmu_co8469801.1_g000001 Rmu_sc0001669.1_g000019 Rmu_sc0004836.1_g000022 Rmu_sc0004849.1_g000015 Rmu_sc0009670.1_g000002 Rmu_ssc0000122.1_g000016 Rmu_ssc0000122.1_g000017
rosa_roxburghii	Rroxscaffold_3G00257420 Rroxscaffold_5G00383970 Rroxscaffold_5G00383980 Rroxscaffold_5G00384010
rosa_rugosa	Rorug04G0346000 Rorug04G0346100 Rorug04G0346200 Rorug04G0346400 Rorug05G0555800
rosa_samantha	Rh4AG154100 Rh4AG401500 Rh4AG401600 Rh4AG401700 Rh4AG401800 Rh4AG401900 Rh4BG412900 Rh4BG413100 Rh4BG413200 Rh4BG413300 Rh4CG162800 Rh4CG428600 Rh4CG428700 Rh4CG428800 Rh4CG428900 Rh4CG429000 Rh4DG408700 Rh4DG408800 Rh4DG408900 Rh4DG409000
rosa_wichuraiana	Rw4G004920 Rw4G034620 Rw4G034630 Rw4G034640 Rw4G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	88, 344
AccBSI	CCGCTC	1 cut(s)	417
AccII	CGCG	1 cut(s)	531
AciI	CCGC	4 cut(s)	83, 202, 415, 531
AcoI	YGGCCR	2 cut(s)	166, 301
AcyI	GRCGYC	1 cut(s)	89
AfaI	GTAC	4 cut(s)	5, 35, 362, 512
AfeI	AGCGCT	1 cut(s)	357
AfiI	CCNNNNNNNGG	1 cut(s)	460
AgsI	TTSAA	2 cut(s)	259, 544
AhdI	GACNNNNNGTC	1 cut(s)	387
AleI	CACNNNNGTG	1 cut(s)	280
AluBI	AGCT	5 cut(s)	111, 156, 386, 441, 520
AluI	AGCT	5 cut(s)	111, 156, 386, 441, 520
Alw21I	GWGCWC	4 cut(s)	158, 214, 492, 522
Alw26I	GTCTC	2 cut(s)	203, 421
Aor51HI	AGCGCT	1 cut(s)	357
AoxI	GGCC	3 cut(s)	166, 232, 301
ApeKI	GCWGC	1 cut(s)	396
AspLEI	GCGC	3 cut(s)	91, 358, 497
AspS9I	GGNCC	1 cut(s)	225
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	2 cut(s)	59, 286
AvaII	GGWCC	1 cut(s)	225
BalI	TGGCCA	2 cut(s)	168, 303
BanI	GGYRCC	2 cut(s)	88, 344
BanII	GRGCYC	3 cut(s)	158, 455, 522
BauI	CACGAG	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	4 cut(s)	158, 214, 492, 522
BbvI	GCAGC	1 cut(s)	383
BccI	CCATC	4 cut(s)	72, 199, 546, 598
BciVI	GTATCC	2 cut(s)	17, 110
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	2 cut(s)	203, 421
BfoI	RGCGCY	2 cut(s)	92, 359
BfuI	GTATCC	2 cut(s)	17, 110
BglI	GCCNNNNNGGC	1 cut(s)	86
BisI	GCNGC	1 cut(s)	397
BlsI	GCNGC	1 cut(s)	398
BmcAI	AGTACT	1 cut(s)	35
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	225
BmeRI	GACNNNNNGTC	1 cut(s)	387
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	4 cut(s)	90, 346, 578, 609
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	2 cut(s)	67, 300
BpiI	GAAGAC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	1 cut(s)	97
BpuEI	CTTGAG	1 cut(s)	506
BpuMI	CCSGG	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	17, 221
BsaWI	WCCGGW	1 cut(s)	610
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	1 cut(s)	460
Bse118I	RCCGGY	2 cut(s)	85, 230
Bse1I	ACTGG	1 cut(s)	348
Bse3DI	GCAATG	2 cut(s)	475, 600
BseDI	CCNNGG	2 cut(s)	17, 221
BseGI	GGATG	3 cut(s)	191, 216, 557
BseLI	CCNNNNNNNGG	1 cut(s)	460
BseMI	GCAATG	2 cut(s)	475, 600
BseNI	ACTGG	1 cut(s)	348
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	1 cut(s)	383
BseYI	CCCAGC	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	531
BshFI	GGCC	3 cut(s)	168, 234, 303
BshNI	GGYRCC	2 cut(s)	88, 344
BsiHKAI	GWGCWC	4 cut(s)	158, 214, 492, 522
BsiSI	CCGG	4 cut(s)	86, 104, 231, 611
BslFI	GGGAC	1 cut(s)	476
BslI	CCNNNNNNNGG	1 cut(s)	460
BsmAI	GTCTC	2 cut(s)	203, 421
BsmBI	CGTCTC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	476
BsnI	GGCC	3 cut(s)	168, 234, 303
Bsp1286I	GDGCHC	5 cut(s)	158, 214, 455, 492, 522
Bsp1407I	TGTACA	1 cut(s)	360
BspACI	CCGC	4 cut(s)	83, 202, 415, 531
BspANI	GGCC	3 cut(s)	168, 234, 303
BspFNI	CGCG	1 cut(s)	531
BspLI	GGNNCC	4 cut(s)	90, 346, 578, 609
BspT107I	GGYRCC	2 cut(s)	88, 344
BsrBI	CCGCTC	1 cut(s)	417
BsrDI	GCAATG	2 cut(s)	475, 600
BsrFI	RCCGGY	2 cut(s)	85, 230
BsrGI	TGTACA	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	348
BssAI	RCCGGY	2 cut(s)	85, 230
BssECI	CCNNGG	2 cut(s)	17, 221
BssNI	GRCGYC	1 cut(s)	89
BssSI	CACGAG	1 cut(s)	207
BssT1I	CCWWGG	2 cut(s)	17, 221
Bst2BI	CACGAG	1 cut(s)	207
Bst4CI	ACNGT	4 cut(s)	164, 266, 515, 581
Bst6I	CTCTTC	1 cut(s)	441
BstACI	GRCGYC	1 cut(s)	89
BstAUI	TGTACA	1 cut(s)	360
BstC8I	GCNNGC	2 cut(s)	87, 158
BstF5I	GGATG	3 cut(s)	191, 216, 557
BstFNI	CGCG	1 cut(s)	531
BstH2I	RGCGCY	2 cut(s)	92, 359
BstHHI	GCGC	3 cut(s)	91, 358, 497
BstMAI	GTCTC	2 cut(s)	203, 421
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 353, 405, 414, 501
BstSCI	CCNGG	1 cut(s)	102
BstUI	CGCG	1 cut(s)	531
BstV1I	GCAGC	1 cut(s)	383
BstV2I	GAAGAC	1 cut(s)	153
BsuI	GTATCC	2 cut(s)	17, 110
BsuRI	GGCC	3 cut(s)	168, 234, 303
BtsCI	GGATG	3 cut(s)	191, 216, 557
BtsI	GCAGTG	1 cut(s)	490
BtsIMutI	CAGTG	4 cut(s)	117, 169, 355, 490
Cac8I	GCNNGC	2 cut(s)	87, 158
CfoI	GCGC	3 cut(s)	91, 358, 497
Cfr10I	RCCGGY	2 cut(s)	85, 230
Cfr13I	GGNCC	1 cut(s)	225
Csp6I	GTAC	4 cut(s)	4, 34, 361, 511
CviAII	CATG	7 cut(s)	151, 178, 288, 393, 405, 557, 628
CviQI	GTAC	4 cut(s)	4, 34, 361, 511
DinI	GGCGCC	1 cut(s)	90
DriI	GACNNNNNGTC	1 cut(s)	387
EaeI	YGGCCR	2 cut(s)	166, 301
Eam1104I	CTCTTC	1 cut(s)	441
Eam1105I	GACNNNNNGTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	441
EciI	GGCGGA	1 cut(s)	191
Ecl136II	GAGCTC	2 cut(s)	156, 520
Eco130I	CCWWGG	2 cut(s)	17, 221
Eco24I	GRGCYC	3 cut(s)	158, 455, 522
Eco47I	GGWCC	1 cut(s)	225
Eco47III	AGCGCT	1 cut(s)	357
Eco53kI	GAGCTC	2 cut(s)	156, 520
EcoICRI	GAGCTC	2 cut(s)	156, 520
EcoT14I	CCWWGG	2 cut(s)	17, 221
EcoT22I	ATGCAT	1 cut(s)	293
EcoT38I	GRGCYC	3 cut(s)	158, 455, 522
EgeI	GGCGCC	1 cut(s)	90
EheI	GGCGCC	1 cut(s)	90
ErhI	CCWWGG	2 cut(s)	17, 221
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	7 cut(s)	154, 181, 291, 396, 408, 560, 631
FaiI	YATR	8 cut(s)	152, 179, 272, 289, 394, 406, 558, 629
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	7 cut(s)	150, 177, 287, 392, 404, 556, 627
FauI	CCCGC	1 cut(s)	90
Fnu4HI	GCNGC	1 cut(s)	397
FokI	GGATG	3 cut(s)	178, 203, 564
FriOI	GRGCYC	3 cut(s)	158, 455, 522
Fsp4HI	GCNGC	1 cut(s)	397
GlaI	GCGC	3 cut(s)	90, 357, 496
GluI	GCNGC	1 cut(s)	397
GsaI	CCCAGC	1 cut(s)	55
GsuI	CTGGAG	1 cut(s)	97
HaeII	RGCGCY	2 cut(s)	92, 359
HaeIII	GGCC	3 cut(s)	168, 234, 303
HapII	CCGG	4 cut(s)	86, 104, 231, 611
HhaI	GCGC	3 cut(s)	91, 358, 497
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	7 cut(s)	154, 181, 291, 396, 408, 560, 631
Hin6I	GCGC	3 cut(s)	89, 356, 495
HinP1I	GCGC	3 cut(s)	89, 356, 495
HinfI	GANTC	2 cut(s)	598, 631
HpaII	CCGG	4 cut(s)	86, 104, 231, 611
HphI	GGTGA	2 cut(s)	59, 286
Hpy166II	GTNNAC	2 cut(s)	228, 363
Hpy188I	TCNGA	3 cut(s)	46, 253, 603
Hpy188III	TCNNGA	1 cut(s)	635
Hpy8I	GTNNAC	2 cut(s)	228, 363
HpyAV	CCTTC	2 cut(s)	578, 617
HpyCH4III	ACNGT	4 cut(s)	164, 266, 515, 581
HpyCH4V	TGCA	4 cut(s)	270, 291, 311, 593
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 353, 405, 414, 501
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	7 cut(s)	154, 181, 291, 396, 408, 560, 631
HspAI	GCGC	3 cut(s)	89, 356, 495
KasI	GGCGCC	1 cut(s)	88
KroI	GCCGGC	1 cut(s)	85
KroNI	GCCGGC	1 cut(s)	87
LmnI	GCTCC	4 cut(s)	116, 353, 422, 613
LpnPI	CCDG	8 cut(s)	65, 81, 99, 117, 127, 244, 361, 624
Lsp1109I	GCAGC	1 cut(s)	383
LweI	GCATC	2 cut(s)	67, 300
MaeIII	GTNAC	2 cut(s)	9, 379
MbiI	CCGCTC	1 cut(s)	417
MboII	GAAGA	2 cut(s)	158, 458
MhlI	GDGCHC	5 cut(s)	158, 214, 455, 492, 522
MlsI	TGGCCA	2 cut(s)	168, 303
MluCI	AATT	1 cut(s)	306
MluNI	TGGCCA	2 cut(s)	168, 303
Mly113I	GGCGCC	1 cut(s)	89
MlyI	GAGTC	1 cut(s)	640
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	5 cut(s)	49, 216, 245, 562, 613
Mox20I	TGGCCA	2 cut(s)	168, 303
Mph1103I	ATGCAT	1 cut(s)	293
MreI	CGCCGGCG	1 cut(s)	85
MroNI	GCCGGC	1 cut(s)	85
MscI	TGGCCA	2 cut(s)	168, 303
MslI	CAYNNNNRTG	2 cut(s)	75, 280
Msp20I	TGGCCA	2 cut(s)	168, 303
MspI	CCGG	4 cut(s)	86, 104, 231, 611
MspR9I	CCNGG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	531
MwoI	GCNNNNNNNGC	5 cut(s)	86, 353, 405, 414, 501
NaeI	GCCGGC	1 cut(s)	87
NarI	GGCGCC	1 cut(s)	89
NciI	CCSGG	1 cut(s)	104
NgoMIV	GCCGGC	1 cut(s)	85
NlaIII	CATG	7 cut(s)	154, 181, 291, 396, 408, 560, 631
NlaIV	GGNNCC	4 cut(s)	90, 346, 578, 609
NmuCI	GTSAC	2 cut(s)	9, 379
NsiI	ATGCAT	1 cut(s)	293
OliI	CACNNNNGTG	1 cut(s)	280
PdiI	GCCGGC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	598
PkrI	GCNGC	1 cut(s)	398
PleI	GAGTC	1 cut(s)	639
PluTI	GGCGCC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	639
Psp124BI	GAGCTC	2 cut(s)	158, 522
PspFI	CCCAGC	1 cut(s)	51
PspN4I	GGNNCC	4 cut(s)	90, 346, 578, 609
PspPI	GGNCC	1 cut(s)	225
RsaI	GTAC	4 cut(s)	5, 35, 362, 512
RsaNI	GTAC	4 cut(s)	4, 34, 361, 511
RseI	CAYNNNNRTG	2 cut(s)	75, 280
SacI	GAGCTC	2 cut(s)	158, 522
SatI	GCNGC	1 cut(s)	397
Sau96I	GGNCC	1 cut(s)	225
ScaI	AGTACT	1 cut(s)	35
SchI	GAGTC	1 cut(s)	640
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	5 cut(s)	158, 214, 455, 492, 522
SetI	ASST	8 cut(s)	100, 113, 127, 158, 299, 388, 443, 522
SfaNI	GCATC	2 cut(s)	67, 300
SfoI	GGCGCC	1 cut(s)	90
SgrAI	CRCCGGYG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	225
SmiMI	CAYNNNNRTG	2 cut(s)	75, 280
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	1 cut(s)	306
SsiI	CCGC	4 cut(s)	83, 202, 415, 531
SspDI	GGCGCC	1 cut(s)	88
SstI	GAGCTC	2 cut(s)	158, 522
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	2 cut(s)	17, 221
TaaI	ACNGT	4 cut(s)	164, 266, 515, 581
TaqI	TCGA	3 cut(s)	537, 567, 634
TasI	AATT	1 cut(s)	306
TatI	WGTACW	3 cut(s)	3, 33, 360
TfiI	GAWTC	1 cut(s)	598
TscAI	CASTG	4 cut(s)	124, 169, 355, 497
TseFI	GTSAC	2 cut(s)	9, 379
TseI	GCWGC	1 cut(s)	396
Tsp45I	GTSAC	2 cut(s)	9, 379
TspDTI	ATGAA	3 cut(s)	393, 464, 611
TspRI	CASTG	4 cut(s)	124, 169, 355, 497
VpaK11BI	GGWCC	1 cut(s)	225
ZrmI	AGTACT	1 cut(s)	35
Zsp2I	ATGCAT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.