Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000741

Physical Location & Seq

Genomic Coordinates Reverse (-)

31969994 .. 31971197

Gene Structure 1204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g33930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTCCTCATCAAAGGCGAGTTCTTACGAGAAGTTCTCCGATGCTCCGGCAACGGGTATTCCGGTGAACTCCAGCGACCCCTACTATAGTCATCCTGCTCATGATAACTCCCACATGCCAGCAGATGCTCCTCCATATCATCATCATCTCCATGCTCGAGCCCCCGAGCCTTGGAAATCTGGCCTCCTTGACTGCTTCTCCGATCCCAAAAGCTGCTGCCTAACATTTTGGTGTCCTTGCGTCACCTTTGGCCAGATTGCTGAGATTGTGGATAAAGGCTCTACATCTTGTGGTGCAAGTGGAGCATTGTATGCGTTGATAGCTTTTGTGACTGGTTGTTCTTGCATCTATTCTTGCTTCTACCGCTCGAAAATGAGGCAGCAGTATTCTTTGGAAGAGAGCCCTTGTGGTGATTGTTTGGTTCACTGCTTCTGCGAGGCCTGCGCCTTGTGCCAGGAGTATCGTGAGCTCGAAAGTCGCGGTTTCAACATGTCCATTGGATGGCATGGAAATATGGATGCAAGGAACCACCAAGTGGCAATGGGCTCGGTGCCCCCCATGGTGGAGGGAGGCATGAGTCGAAATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

197

Amino Acids

21.49

Weight (kDa)

6.02

Isoelectric Point (pI)

59.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAC8	PF04749	58 - 156	8.6e-37	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14870 AT1G14870 AT1G14880 AT5G35525
fragaria_vesca	FvH4_4g33890 FvH4_4g33900 FvH4_4g33900 FvH4_4g33930 FvH4_4g34200
malus_domestica	MD16G1021300.v1.1 MD16G1021400.v1.1
prunus_persica	Prupe.1G331100_v2.0.a1
pyrus_communis	pycom13g01870 pycom16g01900 pycom16g01910
rosa_chinensis	RchiOBHm_Chr0c23g0500741 RchiOBHm_Chr4g0409091 RchiOBHm_Chr4g0443411 RchiOBHm_Chr4g0443421 RchiOBHm_Chr4g0443431 RchiOBHm_Chr4g0443441 RchiOBHm_Chr4g0443451 RchiOBHm_Chr4g0443461 RchiOBHm_Chr5g0070111
rosa_laevigata	RLG00000005927 RLG00000005928 RLG00000005929 RLG00000005930 RLG00000019779
rosa_multiflora	Rmu_co8363857.1_g000001 Rmu_co8469801.1_g000001 Rmu_sc0001669.1_g000019 Rmu_sc0004836.1_g000022 Rmu_sc0004849.1_g000015 Rmu_sc0009670.1_g000002 Rmu_ssc0000122.1_g000016 Rmu_ssc0000122.1_g000017
rosa_roxburghii	Rroxscaffold_3G00257420 Rroxscaffold_5G00383970 Rroxscaffold_5G00383980 Rroxscaffold_5G00384010
rosa_rugosa	Rorug04G0346000 Rorug04G0346100 Rorug04G0346200 Rorug04G0346400 Rorug05G0555800
rosa_samantha	Rh4AG154100 Rh4AG401500 Rh4AG401600 Rh4AG401700 Rh4AG401800 Rh4AG401900 Rh4BG412900 Rh4BG413100 Rh4BG413200 Rh4BG413300 Rh4CG162800 Rh4CG428600 Rh4CG428700 Rh4CG428800 Rh4CG428900 Rh4CG429000 Rh4DG408700 Rh4DG408800 Rh4DG408900 Rh4DG409000
rosa_wichuraiana	Rw4G004920 Rw4G034620 Rw4G034630 Rw4G034640 Rw4G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	550
AccB7I	CCANNNNNTGG	2 cut(s)	501, 535
AccBSI	CCGCTC	1 cut(s)	366
AccII	CGCG	1 cut(s)	480
AciI	CCGC	2 cut(s)	364, 480
AclWI	GGATC	1 cut(s)	197
AcoI	YGGCCR	1 cut(s)	250
AdeI	CACNNNGTG	1 cut(s)	535
AfiI	CCNNNNNNNGG	5 cut(s)	53, 171, 501, 535, 562
AflIII	ACRYGT	1 cut(s)	489
AgsI	TTSAA	1 cut(s)	487
AjnI	CCWGG	1 cut(s)	453
AluBI	AGCT	3 cut(s)	213, 323, 469
AluI	AGCT	3 cut(s)	213, 323, 469
Alw21I	GWGCWC	1 cut(s)	471
AlwI	GGATC	1 cut(s)	197
Ama87I	CYCGRG	2 cut(s)	156, 164
AoxI	GGCC	3 cut(s)	181, 250, 438
ApeKI	GCWGC	3 cut(s)	213, 216, 379
AspLEI	GCGC	1 cut(s)	446
AsuHPI	GGTGA	3 cut(s)	76, 235, 422
AvaI	CYCGRG	2 cut(s)	156, 164
BaeGI	GKGCMC	1 cut(s)	555
BalI	TGGCCA	1 cut(s)	252
BanI	GGYRCC	1 cut(s)	550
BanII	GRGCYC	4 cut(s)	163, 404, 471, 548
Bbv12I	GWGCWC	1 cut(s)	471
BbvI	GCAGC	3 cut(s)	200, 203, 391
BccI	CCATC	1 cut(s)	495
BcgI	CGANNNNNNTGC	2 cut(s)	528, 562
BciT130I	CCWGG	1 cut(s)	455
BfmI	CTRYAG	1 cut(s)	85
BisI	GCNGC	3 cut(s)	214, 217, 380
BlsI	GCNGC	3 cut(s)	215, 218, 381
Bme1390I	CCNGG	1 cut(s)	455
BmeT110I	CYCGRG	2 cut(s)	156, 164
BmiI	GGNNCC	2 cut(s)	527, 552
BmrFI	CCNGG	1 cut(s)	455
BmsI	GCATC	4 cut(s)	31, 115, 354, 508
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	1 cut(s)	55
BsaJI	CCNNGG	2 cut(s)	170, 558
BsaWI	WCCGGW	1 cut(s)	61
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	5 cut(s)	53, 171, 501, 535, 562
Bse1I	ACTGG	1 cut(s)	337
Bse3DI	GCAATG	1 cut(s)	546
BseBI	CCWGG	1 cut(s)	455
BseDI	CCNNGG	2 cut(s)	170, 558
BseGI	GGATG	3 cut(s)	91, 506, 523
BseLI	CCNNNNNNNGG	5 cut(s)	53, 171, 501, 535, 562
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	337
BseRI	GAGGAG	1 cut(s)	120
BseSI	GKGCMC	1 cut(s)	555
BseXI	GCAGC	3 cut(s)	200, 203, 391
Bsh1236I	CGCG	1 cut(s)	480
BshFI	GGCC	3 cut(s)	183, 252, 440
BshNI	GGYRCC	1 cut(s)	550
BsiHKAI	GWGCWC	1 cut(s)	471
BsiHKCI	CYCGRG	2 cut(s)	156, 164
BsiSI	CCGG	2 cut(s)	47, 62
BslI	CCNNNNNNNGG	5 cut(s)	53, 171, 501, 535, 562
BsnI	GGCC	3 cut(s)	183, 252, 440
BsoBI	CYCGRG	2 cut(s)	156, 164
Bsp1286I	GDGCHC	5 cut(s)	163, 404, 471, 548, 555
Bsp143I	GATC	1 cut(s)	202
Bsp19I	CCATGG	1 cut(s)	558
BspACI	CCGC	2 cut(s)	364, 480
BspANI	GGCC	3 cut(s)	183, 252, 440
BspCNI	CTCAG	1 cut(s)	253
BspFNI	CGCG	1 cut(s)	480
BspHI	TCATGA	1 cut(s)	100
BspLI	GGNNCC	2 cut(s)	527, 552
BspPI	GGATC	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	550
BsrBI	CCGCTC	1 cut(s)	366
BsrDI	GCAATG	1 cut(s)	546
BsrI	ACTGG	1 cut(s)	337
BssECI	CCNNGG	2 cut(s)	170, 558
BssMI	GATC	1 cut(s)	202
BssT1I	CCWWGG	2 cut(s)	170, 558
Bst2UI	CCWGG	1 cut(s)	455
Bst6I	CTCTTC	1 cut(s)	390
BstAPI	GCANNNNNTGC	1 cut(s)	311
BstC8I	GCNNGC	2 cut(s)	120, 442
BstDEI	CTNAG	1 cut(s)	261
BstDSI	CCRYGG	1 cut(s)	558
BstF5I	GGATG	3 cut(s)	91, 506, 523
BstFNI	CGCG	1 cut(s)	480
BstHHI	GCGC	1 cut(s)	446
BstKTI	GATC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	6 cut(s)	302, 311, 320, 363, 441, 450
BstNI	CCWGG	1 cut(s)	455
BstNSI	RCATGY	2 cut(s)	118, 493
BstSCI	CCNGG	1 cut(s)	453
BstSFI	CTRYAG	1 cut(s)	85
BstSLI	GKGCMC	1 cut(s)	555
BstUI	CGCG	1 cut(s)	480
BstV1I	GCAGC	3 cut(s)	200, 203, 391
BsuRI	GGCC	3 cut(s)	183, 252, 440
BtgI	CCRYGG	1 cut(s)	558
BtsCI	GGATG	3 cut(s)	91, 506, 523
BtsI	GCAGTG	1 cut(s)	424
BtsIMutI	CAGTG	1 cut(s)	424
Cac8I	GCNNGC	2 cut(s)	120, 442
CciI	TCATGA	1 cut(s)	100
CfoI	GCGC	1 cut(s)	446
CseI	GACGC	1 cut(s)	229
CviAII	CATG	7 cut(s)	101, 115, 152, 490, 506, 559, 574
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
DraIII	CACNNNGTG	1 cut(s)	535
EaeI	YGGCCR	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Ecl136II	GAGCTC	1 cut(s)	469
Eco130I	CCWWGG	2 cut(s)	170, 558
Eco147I	AGGCCT	1 cut(s)	440
Eco24I	GRGCYC	4 cut(s)	163, 404, 471, 548
Eco53kI	GAGCTC	1 cut(s)	469
Eco88I	CYCGRG	2 cut(s)	156, 164
EcoICRI	GAGCTC	1 cut(s)	469
EcoRII	CCWGG	1 cut(s)	453
EcoT14I	CCWWGG	2 cut(s)	170, 558
EcoT38I	GRGCYC	4 cut(s)	163, 404, 471, 548
ErhI	CCWWGG	2 cut(s)	170, 558
FaeI	CATG	7 cut(s)	104, 118, 155, 493, 509, 562, 577
FatI	CATG	7 cut(s)	100, 114, 151, 489, 505, 558, 573
Fnu4HI	GCNGC	3 cut(s)	214, 217, 380
FokI	GGATG	3 cut(s)	78, 513, 530
FriOI	GRGCYC	4 cut(s)	163, 404, 471, 548
Fsp4HI	GCNGC	3 cut(s)	214, 217, 380
GlaI	GCGC	1 cut(s)	445
GluI	GCNGC	3 cut(s)	214, 217, 380
GsuI	CTGGAG	1 cut(s)	55
HaeIII	GGCC	3 cut(s)	183, 252, 440
HapII	CCGG	2 cut(s)	47, 62
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	1 cut(s)	446
Hin1II	CATG	7 cut(s)	104, 118, 155, 493, 509, 562, 577
Hin6I	GCGC	1 cut(s)	444
HinP1I	GCGC	1 cut(s)	444
HinfI	GANTC	1 cut(s)	577
HpaII	CCGG	2 cut(s)	47, 62
HphI	GGTGA	3 cut(s)	76, 235, 422
Hpy166II	GTNNAC	2 cut(s)	67, 424
Hpy188I	TCNGA	2 cut(s)	40, 202
Hpy188III	TCNNGA	2 cut(s)	101, 464
Hpy8I	GTNNAC	2 cut(s)	67, 424
HpyCH4V	TGCA	3 cut(s)	296, 345, 521
HpyF10VI	GCNNNNNNNGC	6 cut(s)	302, 311, 320, 363, 441, 450
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	7 cut(s)	104, 118, 155, 493, 509, 562, 577
HspAI	GCGC	1 cut(s)	444
Kzo9I	GATC	1 cut(s)	202
LmnI	GCTCC	3 cut(s)	49, 133, 302
Lsp1109I	GCAGC	3 cut(s)	200, 203, 391
LweI	GCATC	4 cut(s)	31, 115, 354, 508
MaeIII	GTNAC	2 cut(s)	241, 328
MalI	GATC	1 cut(s)	204
MbiI	CCGCTC	1 cut(s)	366
MboI	GATC	1 cut(s)	202
MboII	GAAGA	1 cut(s)	407
MhlI	GDGCHC	5 cut(s)	163, 404, 471, 548, 555
MlsI	TGGCCA	1 cut(s)	252
MluNI	TGGCCA	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	586
MnlI	CCTC	7 cut(s)	16, 141, 194, 369, 430, 559, 563
Mox20I	TGGCCA	1 cut(s)	252
MscI	TGGCCA	1 cut(s)	252
MslI	CAYNNNNRTG	2 cut(s)	150, 229
Msp20I	TGGCCA	1 cut(s)	252
MspI	CCGG	2 cut(s)	47, 62
MspR9I	CCNGG	1 cut(s)	455
MvaI	CCWGG	1 cut(s)	455
MvnI	CGCG	1 cut(s)	480
MwoI	GCNNNNNNNGC	6 cut(s)	302, 311, 320, 363, 441, 450
NcoI	CCATGG	1 cut(s)	558
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	7 cut(s)	104, 118, 155, 493, 509, 562, 577
NlaIV	GGNNCC	2 cut(s)	527, 552
NmuCI	GTSAC	2 cut(s)	241, 328
NspI	RCATGY	2 cut(s)	118, 493
PaeR7I	CTCGAG	1 cut(s)	156
PagI	TCATGA	1 cut(s)	100
PceI	AGGCCT	1 cut(s)	440
PciI	ACATGT	1 cut(s)	489
PflMI	CCANNNNNTGG	2 cut(s)	501, 535
PkrI	GCNGC	3 cut(s)	215, 218, 381
PleI	GAGTC	1 cut(s)	585
PpsI	GAGTC	1 cut(s)	585
PscI	ACATGT	1 cut(s)	489
Psp124BI	GAGCTC	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	453
PspN4I	GGNNCC	2 cut(s)	527, 552
PspXI	VCTCGAGB	1 cut(s)	156
RseI	CAYNNNNRTG	2 cut(s)	150, 229
SacI	GAGCTC	1 cut(s)	471
SatI	GCNGC	3 cut(s)	214, 217, 380
Sau3AI	GATC	1 cut(s)	202
SchI	GAGTC	1 cut(s)	586
ScrFI	CCNGG	1 cut(s)	455
SduI	GDGCHC	5 cut(s)	163, 404, 471, 548, 555
SetI	ASST	4 cut(s)	215, 248, 325, 471
SfaNI	GCATC	4 cut(s)	31, 115, 354, 508
SfcI	CTRYAG	1 cut(s)	85
Sfr274I	CTCGAG	1 cut(s)	156
SlaI	CTCGAG	1 cut(s)	156
SmiMI	CAYNNNNRTG	2 cut(s)	150, 229
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
SseBI	AGGCCT	1 cut(s)	440
SsiI	CCGC	2 cut(s)	364, 480
SstI	GAGCTC	1 cut(s)	471
StuI	AGGCCT	1 cut(s)	440
StyD4I	CCNGG	1 cut(s)	453
StyI	CCWWGG	2 cut(s)	170, 558
TaqI	TCGA	4 cut(s)	157, 368, 471, 580
TscAI	CASTG	1 cut(s)	431
TseFI	GTSAC	2 cut(s)	241, 328
TseI	GCWGC	3 cut(s)	213, 216, 379
Tsp45I	GTSAC	2 cut(s)	241, 328
TspRI	CASTG	1 cut(s)	431
Van91I	CCANNNNNTGG	2 cut(s)	501, 535
XceI	RCATGY	2 cut(s)	118, 493
XhoI	CTCGAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.