Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000741

Physical Location & Seq

Genomic Coordinates Reverse (-)

56143071 .. 56144233

Gene Structure 1163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG413200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTCCAGCAACCTTAGTGGAGCTCATGACTCCCACATGCAGGGTGCTCCTCCATATCACCTCCATGCTAGAACCCCCGAGCCTTGGAAATCTGGCCTCCTTGACTGCTTCTCCGATCCCGCAAACTGTTGCATAACATTTTGGTGTCCATGCATCACCTTTGGCCAGATTGCTGAGATTGTGGATAAAGGCTCTATACCCTGTGTGGCAAGTGGAGCACTGTACACGTTGATAGCTTTCGTGACTGGTTGTGCTTGCATCTATTCATGCTTCTACCGCTCGAAGATGAGGCAGCAGTACGCTTTGGACGAGAGCCCCTGTAGTGATTGTTTGGTTCACTGCTGCTGTGAGCCCTGCGCCTTGTGCCAGGAGTATCGTGAGCTCCAAAGTCGCGGTTTTAACATGGCCATCGGATGGGATGGAAATATGGATGCAAGGAACCGCGAAGTGGCAATGGCCTCGGCGCCCCCGATGGTGGAGGAAGGCATGAGTCGTGATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

167

Amino Acids

18.4

Weight (kDa)

5.25

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAC8	PF04749	29 - 127	4.3e-36	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14870 AT1G14870 AT1G14880 AT5G35525
fragaria_vesca	FvH4_4g33890 FvH4_4g33900 FvH4_4g33900 FvH4_4g33930 FvH4_4g34200
malus_domestica	MD16G1021300.v1.1 MD16G1021400.v1.1
prunus_persica	Prupe.1G331100_v2.0.a1
pyrus_communis	pycom13g01870 pycom16g01900 pycom16g01910
rosa_chinensis	RchiOBHm_Chr0c23g0500741 RchiOBHm_Chr4g0409091 RchiOBHm_Chr4g0443411 RchiOBHm_Chr4g0443421 RchiOBHm_Chr4g0443431 RchiOBHm_Chr4g0443441 RchiOBHm_Chr4g0443451 RchiOBHm_Chr4g0443461 RchiOBHm_Chr5g0070111
rosa_laevigata	RLG00000005927 RLG00000005928 RLG00000005929 RLG00000005930 RLG00000019779
rosa_multiflora	Rmu_co8363857.1_g000001 Rmu_co8469801.1_g000001 Rmu_sc0001669.1_g000019 Rmu_sc0004836.1_g000022 Rmu_sc0004849.1_g000015 Rmu_sc0009670.1_g000002 Rmu_ssc0000122.1_g000016 Rmu_ssc0000122.1_g000017
rosa_roxburghii	Rroxscaffold_3G00257420 Rroxscaffold_5G00383970 Rroxscaffold_5G00383980 Rroxscaffold_5G00384010
rosa_rugosa	Rorug04G0346000 Rorug04G0346100 Rorug04G0346200 Rorug04G0346400 Rorug05G0555800
rosa_samantha	Rh4AG154100 Rh4AG401500 Rh4AG401600 Rh4AG401700 Rh4AG401800 Rh4AG401900 Rh4BG412900 Rh4BG413100 Rh4BG413200 Rh4BG413300 Rh4CG162800 Rh4CG428600 Rh4CG428700 Rh4CG428800 Rh4CG428900 Rh4CG429000 Rh4DG408700 Rh4DG408800 Rh4DG408900 Rh4DG409000
rosa_wichuraiana	Rw4G004920 Rw4G034620 Rw4G034630 Rw4G034640 Rw4G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	463
AccB7I	CCANNNNNTGG	1 cut(s)	414
AccBSI	CCGCTC	1 cut(s)	279
AccII	CGCG	2 cut(s)	393, 444
AciI	CCGC	4 cut(s)	120, 277, 393, 442
AclWI	GGATC	1 cut(s)	110
AcoI	YGGCCR	2 cut(s)	163, 405
AcyI	GRCGYC	1 cut(s)	464
AfaI	GTAC	2 cut(s)	224, 299
AfiI	CCNNNNNNNGG	5 cut(s)	40, 84, 414, 448, 475
AflIII	ACRYGT	1 cut(s)	225
AjnI	CCWGG	1 cut(s)	366
AluBI	AGCT	3 cut(s)	23, 236, 382
AluI	AGCT	3 cut(s)	23, 236, 382
Alw21I	GWGCWC	4 cut(s)	25, 49, 220, 384
AlwI	GGATC	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	77
AoxI	GGCC	4 cut(s)	94, 163, 405, 456
ApeKI	GCWGC	2 cut(s)	292, 342
AspLEI	GCGC	2 cut(s)	359, 466
AsuHPI	GGTGA	2 cut(s)	50, 148
AvaI	CYCGRG	1 cut(s)	77
BalI	TGGCCA	2 cut(s)	165, 407
BanI	GGYRCC	1 cut(s)	463
BanII	GRGCYC	4 cut(s)	25, 317, 354, 384
Bbv12I	GWGCWC	4 cut(s)	25, 49, 220, 384
BbvI	GCAGC	2 cut(s)	304, 329
BccI	CCATC	4 cut(s)	408, 413, 416, 466
BcgI	CGANNNNNNTGC	2 cut(s)	441, 475
BciT130I	CCWGG	1 cut(s)	368
BfaI	CTAG	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	319
BfoI	RGCGCY	1 cut(s)	467
BisI	GCNGC	2 cut(s)	293, 343
BlsI	GCNGC	2 cut(s)	294, 344
Bme1390I	CCNGG	1 cut(s)	368
BmeT110I	CYCGRG	1 cut(s)	77
BmiI	GGNNCC	2 cut(s)	440, 465
BmrFI	CCNGG	1 cut(s)	368
BmsI	GCATC	3 cut(s)	162, 267, 421
BsaHI	GRCGYC	1 cut(s)	464
BsaJI	CCNNGG	2 cut(s)	83, 459
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	5 cut(s)	40, 84, 414, 448, 475
Bse1I	ACTGG	1 cut(s)	250
Bse3DI	GCAATG	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	2 cut(s)	83, 459
BseGI	GGATG	3 cut(s)	419, 424, 436
BseLI	CCNNNNNNNGG	5 cut(s)	40, 84, 414, 448, 475
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	250
BseRI	GAGGAG	1 cut(s)	39
BseXI	GCAGC	2 cut(s)	304, 329
Bsh1236I	CGCG	2 cut(s)	393, 444
BshFI	GGCC	4 cut(s)	96, 165, 407, 458
BshNI	GGYRCC	1 cut(s)	463
BsiHKAI	GWGCWC	4 cut(s)	25, 49, 220, 384
BsiHKCI	CYCGRG	1 cut(s)	77
BslI	CCNNNNNNNGG	5 cut(s)	40, 84, 414, 448, 475
BsnI	GGCC	4 cut(s)	96, 165, 407, 458
BsoBI	CYCGRG	1 cut(s)	77
Bsp1286I	GDGCHC	6 cut(s)	25, 49, 220, 317, 354, 384
Bsp1407I	TGTACA	1 cut(s)	222
Bsp143I	GATC	1 cut(s)	115
BspACI	CCGC	4 cut(s)	120, 277, 393, 442
BspANI	GGCC	4 cut(s)	96, 165, 407, 458
BspCNI	CTCAG	1 cut(s)	166
BspFNI	CGCG	2 cut(s)	393, 444
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	2 cut(s)	440, 465
BspPI	GGATC	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	463
BsrBI	CCGCTC	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	459
BsrGI	TGTACA	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	250
BssECI	CCNNGG	2 cut(s)	83, 459
BssMI	GATC	1 cut(s)	115
BssNI	GRCGYC	1 cut(s)	464
BssT1I	CCWWGG	1 cut(s)	83
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	2 cut(s)	128, 222
BstACI	GRCGYC	1 cut(s)	464
BstAUI	TGTACA	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	2 cut(s)	14, 174
BstF5I	GGATG	3 cut(s)	419, 424, 436
BstFNI	CGCG	2 cut(s)	393, 444
BstH2I	RGCGCY	1 cut(s)	467
BstHHI	GCGC	2 cut(s)	359, 466
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 276, 363
BstNI	CCWGG	1 cut(s)	368
BstNSI	RCATGY	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	366
BstSFI	CTRYAG	1 cut(s)	319
BstUI	CGCG	2 cut(s)	393, 444
BstV1I	GCAGC	2 cut(s)	304, 329
BsuRI	GGCC	4 cut(s)	96, 165, 407, 458
BtsCI	GGATG	3 cut(s)	419, 424, 436
BtsI	GCAGTG	1 cut(s)	337
BtsIMutI	CAGTG	2 cut(s)	218, 337
Cac8I	GCNNGC	1 cut(s)	256
CciI	TCATGA	1 cut(s)	25
CfoI	GCGC	2 cut(s)	359, 466
Csp6I	GTAC	2 cut(s)	223, 298
CspCI	CAANNNNNGTGG	1 cut(s)	33
CviAII	CATG	7 cut(s)	26, 37, 65, 150, 267, 403, 487
CviQI	GTAC	2 cut(s)	223, 298
DdeI	CTNAG	2 cut(s)	14, 174
DinI	GGCGCC	1 cut(s)	465
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
EaeI	YGGCCR	2 cut(s)	163, 405
Ecl136II	GAGCTC	2 cut(s)	23, 382
Eco130I	CCWWGG	1 cut(s)	83
Eco24I	GRGCYC	4 cut(s)	25, 317, 354, 384
Eco53kI	GAGCTC	2 cut(s)	23, 382
Eco88I	CYCGRG	1 cut(s)	77
EcoICRI	GAGCTC	2 cut(s)	23, 382
EcoRII	CCWGG	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	83
EcoT22I	ATGCAT	1 cut(s)	155
EcoT38I	GRGCYC	4 cut(s)	25, 317, 354, 384
EgeI	GGCGCC	1 cut(s)	465
EheI	GGCGCC	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	83
FaeI	CATG	7 cut(s)	29, 40, 68, 153, 270, 406, 490
FatI	CATG	7 cut(s)	25, 36, 64, 149, 266, 402, 486
FauI	CCCGC	1 cut(s)	127
Fnu4HI	GCNGC	2 cut(s)	293, 343
FokI	GGATG	3 cut(s)	426, 431, 443
FriOI	GRGCYC	4 cut(s)	25, 317, 354, 384
Fsp4HI	GCNGC	2 cut(s)	293, 343
FspBI	CTAG	1 cut(s)	69
GlaI	GCGC	2 cut(s)	358, 465
GluI	GCNGC	2 cut(s)	293, 343
HaeII	RGCGCY	1 cut(s)	467
HaeIII	GGCC	4 cut(s)	96, 165, 407, 458
HhaI	GCGC	2 cut(s)	359, 466
Hin1I	GRCGYC	1 cut(s)	464
Hin1II	CATG	7 cut(s)	29, 40, 68, 153, 270, 406, 490
Hin6I	GCGC	2 cut(s)	357, 464
HinP1I	GCGC	2 cut(s)	357, 464
HinfI	GANTC	2 cut(s)	29, 490
HphI	GGTGA	2 cut(s)	50, 148
Hpy166II	GTNNAC	2 cut(s)	225, 337
Hpy188I	TCNGA	2 cut(s)	115, 413
Hpy188III	TCNNGA	4 cut(s)	26, 241, 377, 494
Hpy8I	GTNNAC	2 cut(s)	225, 337
HpyAV	CCTTC	1 cut(s)	476
HpyCH4III	ACNGT	2 cut(s)	128, 222
HpyCH4IV	ACGT	1 cut(s)	227
HpyCH4V	TGCA	5 cut(s)	40, 132, 153, 258, 434
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 276, 363
HpyF3I	CTNAG	2 cut(s)	14, 174
HpySE526I	ACGT	1 cut(s)	227
Hsp92I	GRCGYC	1 cut(s)	464
Hsp92II	CATG	7 cut(s)	29, 40, 68, 153, 270, 406, 490
HspAI	GCGC	2 cut(s)	357, 464
KasI	GGCGCC	1 cut(s)	463
Kzo9I	GATC	1 cut(s)	115
LmnI	GCTCC	4 cut(s)	20, 52, 215, 387
Lsp1109I	GCAGC	2 cut(s)	304, 329
LweI	GCATC	3 cut(s)	162, 267, 421
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	1 cut(s)	227
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	1 cut(s)	117
MbiI	CCGCTC	1 cut(s)	279
MboI	GATC	1 cut(s)	115
MboII	GAAGA	1 cut(s)	295
MhlI	GDGCHC	6 cut(s)	25, 49, 220, 317, 354, 384
MlsI	TGGCCA	2 cut(s)	165, 407
MluNI	TGGCCA	2 cut(s)	165, 407
Mly113I	GGCGCC	1 cut(s)	464
MlyI	GAGTC	2 cut(s)	23, 499
MnlI	CCTC	6 cut(s)	60, 71, 107, 282, 469, 472
Mox20I	TGGCCA	2 cut(s)	165, 407
Mph1103I	ATGCAT	1 cut(s)	155
MscI	TGGCCA	2 cut(s)	165, 407
MseI	TTAA	1 cut(s)	399
MslI	CAYNNNNRTG	2 cut(s)	63, 142
Msp20I	TGGCCA	2 cut(s)	165, 407
MspR9I	CCNGG	1 cut(s)	368
MvaI	CCWGG	1 cut(s)	368
MvnI	CGCG	2 cut(s)	393, 444
MwoI	GCNNNNNNNGC	3 cut(s)	215, 276, 363
NarI	GGCGCC	1 cut(s)	464
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	7 cut(s)	29, 40, 68, 153, 270, 406, 490
NlaIV	GGNNCC	2 cut(s)	440, 465
NmeAIII	GCCGAG	1 cut(s)	440
NmuCI	GTSAC	1 cut(s)	241
NsiI	ATGCAT	1 cut(s)	155
NspI	RCATGY	1 cut(s)	40
PagI	TCATGA	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	2 cut(s)	306, 467
PflMI	CCANNNNNTGG	1 cut(s)	414
PkrI	GCNGC	2 cut(s)	294, 344
PleI	GAGTC	2 cut(s)	23, 498
PluTI	GGCGCC	1 cut(s)	467
PpsI	GAGTC	2 cut(s)	23, 498
Psp124BI	GAGCTC	2 cut(s)	25, 384
Psp6I	CCWGG	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	2 cut(s)	440, 465
RsaI	GTAC	2 cut(s)	224, 299
RsaNI	GTAC	2 cut(s)	223, 298
RseI	CAYNNNNRTG	2 cut(s)	63, 142
SacI	GAGCTC	2 cut(s)	25, 384
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	2 cut(s)	293, 343
Sau3AI	GATC	1 cut(s)	115
SchI	GAGTC	2 cut(s)	23, 499
ScrFI	CCNGG	1 cut(s)	368
SduI	GDGCHC	6 cut(s)	25, 49, 220, 317, 354, 384
SetI	ASST	7 cut(s)	15, 25, 63, 161, 230, 238, 384
SfaNI	GCATC	3 cut(s)	162, 267, 421
SfcI	CTRYAG	1 cut(s)	319
SfoI	GGCGCC	1 cut(s)	465
SmiMI	CAYNNNNRTG	2 cut(s)	63, 142
SsiI	CCGC	4 cut(s)	120, 277, 393, 442
SspDI	GGCGCC	1 cut(s)	463
SspMI	CTAG	1 cut(s)	69
SstI	GAGCTC	2 cut(s)	25, 384
StyD4I	CCNGG	1 cut(s)	366
StyI	CCWWGG	1 cut(s)	83
TaaI	ACNGT	2 cut(s)	128, 222
TaiI	ACGT	1 cut(s)	230
TaqI	TCGA	1 cut(s)	281
TatI	WGTACW	1 cut(s)	222
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	2 cut(s)	225, 344
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	2 cut(s)	292, 342
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	1 cut(s)	255
TspRI	CASTG	2 cut(s)	225, 344
Van91I	CCANNNNNTGG	1 cut(s)	414
XceI	RCATGY	1 cut(s)	40
XspI	CTAG	1 cut(s)	69
Zsp2I	ATGCAT	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.