Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000741

Physical Location & Seq

Genomic Coordinates Reverse (-)

56150575 .. 56151636

Gene Structure 1062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG413300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTCCTCATCAAAACCGAATTCGTACGGGAAGTTCTCAGATGCTCTTCCGGCAACGGGTATTCCGGTGAACTCCAGCAACCCCTACTTTAGTCAACCTGCTCATAATCACCACCAGCATCATGATAACTCCCAGATGCCGGATGCTCCTCCATATCATCTCCATGCTAGAACACCCGAGCCTTGGAAATCTGGCCTTCTTGACTGCTTCTCCGATCCCAAAAGCTGCTGCCTAACACTTTGGTGTCCCTGCGTCACCTTTGGCCAGATTGCTGAGATTGTGGATAAAGGCTCTACATCTTGTGGTGCAAGTGGAGCACTGTACGCGTTGATAGCTTTTGTGACTGGTTGTTCTTGCATCTATTCATGCTTCTACCGCTCCAAACTGAGGCAGCAGTACACTTTGGACGAGAGCCCTTGTGGTGATTGCTTGGTTCACTGCTTCTGTGAGTATTGCGCCCTGTGCCAGGAGTACCGCGAGCTCCAAAGTCGCGGTTTCAACATGGCCGTCGGATGGCATGGAAATATGGATGCAAGGAACCACGAAGTGGCAATGGCCGCGGTGCCCCCGATGGTGGAGGAGGGCATGAGTCGTGATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

200

Amino Acids

22.1

Weight (kDa)

6.02

Isoelectric Point (pI)

54.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAC8	PF04749	62 - 160	5.7e-36	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14870 AT1G14870 AT1G14880 AT5G35525
fragaria_vesca	FvH4_4g33890 FvH4_4g33900 FvH4_4g33900 FvH4_4g33930 FvH4_4g34200
malus_domestica	MD16G1021300.v1.1 MD16G1021400.v1.1
prunus_persica	Prupe.1G331100_v2.0.a1
pyrus_communis	pycom13g01870 pycom16g01900 pycom16g01910
rosa_chinensis	RchiOBHm_Chr0c23g0500741 RchiOBHm_Chr4g0409091 RchiOBHm_Chr4g0443411 RchiOBHm_Chr4g0443421 RchiOBHm_Chr4g0443431 RchiOBHm_Chr4g0443441 RchiOBHm_Chr4g0443451 RchiOBHm_Chr4g0443461 RchiOBHm_Chr5g0070111
rosa_laevigata	RLG00000005927 RLG00000005928 RLG00000005929 RLG00000005930 RLG00000019779
rosa_multiflora	Rmu_co8363857.1_g000001 Rmu_co8469801.1_g000001 Rmu_sc0001669.1_g000019 Rmu_sc0004836.1_g000022 Rmu_sc0004849.1_g000015 Rmu_sc0009670.1_g000002 Rmu_ssc0000122.1_g000016 Rmu_ssc0000122.1_g000017
rosa_roxburghii	Rroxscaffold_3G00257420 Rroxscaffold_5G00383970 Rroxscaffold_5G00383980 Rroxscaffold_5G00384010
rosa_rugosa	Rorug04G0346000 Rorug04G0346100 Rorug04G0346200 Rorug04G0346400 Rorug05G0555800
rosa_samantha	Rh4AG154100 Rh4AG401500 Rh4AG401600 Rh4AG401700 Rh4AG401800 Rh4AG401900 Rh4BG412900 Rh4BG413100 Rh4BG413200 Rh4BG413300 Rh4CG162800 Rh4CG428600 Rh4CG428700 Rh4CG428800 Rh4CG428900 Rh4CG429000 Rh4DG408700 Rh4DG408800 Rh4DG408900 Rh4DG409000
rosa_wichuraiana	Rw4G004920 Rw4G034620 Rw4G034630 Rw4G034640 Rw4G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	106
AccB1I	GGYRCC	1 cut(s)	562
AccB7I	CCANNNNNTGG	1 cut(s)	547
AccBSI	CCGCTC	1 cut(s)	378
AccII	CGCG	4 cut(s)	326, 477, 492, 560
AciI	CCGC	5 cut(s)	376, 475, 492, 558, 560
AclWI	GGATC	1 cut(s)	209
AcoI	YGGCCR	3 cut(s)	262, 504, 555
AcsI	RAATTY	1 cut(s)	19
AdeI	CACNNNGTG	1 cut(s)	547
AfaI	GTAC	4 cut(s)	26, 323, 398, 473
AfiI	CCNNNNNNNGG	8 cut(s)	56, 139, 183, 387, 466, 513, 547, 574
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	1 cut(s)	499
AjnI	CCWGG	1 cut(s)	465
AleI	CACNNNNGTG	1 cut(s)	241
AluBI	AGCT	3 cut(s)	225, 335, 481
AluI	AGCT	3 cut(s)	225, 335, 481
Alw21I	GWGCWC	2 cut(s)	319, 483
AlwI	GGATC	1 cut(s)	209
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	4 cut(s)	193, 262, 504, 555
ApeKI	GCWGC	3 cut(s)	225, 228, 391
ApoI	RAATTY	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	458
AsuHPI	GGTGA	4 cut(s)	79, 101, 247, 434
AvaI	CYCGRG	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	567
BalI	TGGCCA	1 cut(s)	264
BanI	GGYRCC	1 cut(s)	562
BanII	GRGCYC	2 cut(s)	416, 483
Bbv12I	GWGCWC	2 cut(s)	319, 483
BbvI	GCAGC	3 cut(s)	212, 215, 403
BccI	CCATC	2 cut(s)	507, 565
BceAI	ACGGC	1 cut(s)	491
BciT130I	CCWGG	1 cut(s)	467
BfaI	CTAG	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	106
BisI	GCNGC	4 cut(s)	226, 229, 392, 558
BlsI	GCNGC	4 cut(s)	227, 230, 393, 559
Bme1390I	CCNGG	1 cut(s)	467
BmeT110I	CYCGRG	1 cut(s)	176
BmiI	GGNNCC	2 cut(s)	539, 564
BmrFI	CCNGG	1 cut(s)	467
BmsI	GCATC	6 cut(s)	31, 126, 127, 133, 366, 520
BpmI	CTGGAG	1 cut(s)	58
BsaJI	CCNNGG	2 cut(s)	182, 558
BsaWI	WCCGGW	1 cut(s)	64
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	8 cut(s)	56, 139, 183, 387, 466, 513, 547, 574
Bse1I	ACTGG	1 cut(s)	349
Bse3DI	GCAATG	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	467
BseDI	CCNNGG	2 cut(s)	182, 558
BseGI	GGATG	3 cut(s)	148, 518, 535
BseLI	CCNNNNNNNGG	8 cut(s)	56, 139, 183, 387, 466, 513, 547, 574
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	3 cut(s)	51, 264, 377
BseNI	ACTGG	1 cut(s)	349
BseRI	GAGGAG	2 cut(s)	138, 593
BseSI	GKGCMC	1 cut(s)	567
BseXI	GCAGC	3 cut(s)	212, 215, 403
Bsh1236I	CGCG	4 cut(s)	326, 477, 492, 560
BshFI	GGCC	4 cut(s)	195, 264, 506, 557
BshNI	GGYRCC	1 cut(s)	562
BsiHKAI	GWGCWC	2 cut(s)	319, 483
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	3 cut(s)	50, 65, 140
BsiWI	CGTACG	1 cut(s)	24
BslFI	GGGAC	1 cut(s)	231
BslI	CCNNNNNNNGG	8 cut(s)	56, 139, 183, 387, 466, 513, 547, 574
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	4 cut(s)	195, 264, 506, 557
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	4 cut(s)	319, 416, 483, 567
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	5 cut(s)	376, 475, 492, 558, 560
BspANI	GGCC	4 cut(s)	195, 264, 506, 557
BspCNI	CTCAG	3 cut(s)	50, 265, 378
BspFNI	CGCG	4 cut(s)	326, 477, 492, 560
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	2 cut(s)	539, 564
BspMI	ACCTGC	1 cut(s)	106
BspPI	GGATC	1 cut(s)	209
BspQI	GCTCTTC	1 cut(s)	51
BspT107I	GGYRCC	1 cut(s)	562
BsrBI	CCGCTC	1 cut(s)	378
BsrDI	GCAATG	1 cut(s)	558
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	2 cut(s)	182, 558
BssMI	GATC	1 cut(s)	214
BssT1I	CCWWGG	1 cut(s)	182
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	1 cut(s)	321
Bst6I	CTCTTC	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	479
BstDEI	CTNAG	3 cut(s)	37, 273, 386
BstDSI	CCRYGG	1 cut(s)	558
BstENI	CCTNNNNNAGG	1 cut(s)	464
BstF5I	GGATG	3 cut(s)	148, 518, 535
BstFNI	CGCG	4 cut(s)	326, 477, 492, 560
BstHHI	GCGC	1 cut(s)	458
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 314, 323, 332, 375, 462, 557
BstNI	CCWGG	1 cut(s)	467
BstSCI	CCNGG	1 cut(s)	465
BstSLI	GKGCMC	1 cut(s)	567
BstUI	CGCG	4 cut(s)	326, 477, 492, 560
BstV1I	GCAGC	3 cut(s)	212, 215, 403
BsuRI	GGCC	4 cut(s)	195, 264, 506, 557
BtgI	CCRYGG	1 cut(s)	558
BtsCI	GGATG	3 cut(s)	148, 518, 535
BtsI	GCAGTG	1 cut(s)	436
BtsIMutI	CAGTG	2 cut(s)	317, 436
BveI	ACCTGC	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	479
CciI	TCATGA	1 cut(s)	121
CfoI	GCGC	1 cut(s)	458
Cfr42I	CCGCGG	1 cut(s)	561
CseI	GACGC	1 cut(s)	241
Csp6I	GTAC	4 cut(s)	25, 322, 397, 472
CviAII	CATG	6 cut(s)	122, 164, 366, 502, 518, 586
CviQI	GTAC	4 cut(s)	25, 322, 397, 472
DdeI	CTNAG	3 cut(s)	37, 273, 386
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
DraIII	CACNNNGTG	1 cut(s)	547
EaeI	YGGCCR	3 cut(s)	262, 504, 555
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	481
Eco130I	CCWWGG	1 cut(s)	182
Eco24I	GRGCYC	2 cut(s)	416, 483
Eco53kI	GAGCTC	1 cut(s)	481
Eco88I	CYCGRG	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	481
EcoNI	CCTNNNNNAGG	1 cut(s)	464
EcoRI	GAATTC	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	465
EcoT14I	CCWWGG	1 cut(s)	182
EcoT38I	GRGCYC	2 cut(s)	416, 483
ErhI	CCWWGG	1 cut(s)	182
FaeI	CATG	6 cut(s)	125, 167, 369, 505, 521, 589
FaiI	YATR	9 cut(s)	105, 123, 154, 165, 367, 503, 519, 527, 587
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	6 cut(s)	121, 163, 365, 501, 517, 585
Fnu4HI	GCNGC	4 cut(s)	226, 229, 392, 558
FokI	GGATG	3 cut(s)	155, 525, 542
FriOI	GRGCYC	2 cut(s)	416, 483
Fsp4HI	GCNGC	4 cut(s)	226, 229, 392, 558
FspBI	CTAG	1 cut(s)	168
GlaI	GCGC	1 cut(s)	457
GluI	GCNGC	4 cut(s)	226, 229, 392, 558
GsuI	CTGGAG	1 cut(s)	58
HaeIII	GGCC	4 cut(s)	195, 264, 506, 557
HapII	CCGG	3 cut(s)	50, 65, 140
HgaI	GACGC	1 cut(s)	241
HhaI	GCGC	1 cut(s)	458
Hin1II	CATG	6 cut(s)	125, 167, 369, 505, 521, 589
Hin6I	GCGC	1 cut(s)	456
HinP1I	GCGC	1 cut(s)	456
HincII	GTYRAC	1 cut(s)	95
HindII	GTYRAC	1 cut(s)	95
HinfI	GANTC	1 cut(s)	589
HpaII	CCGG	3 cut(s)	50, 65, 140
HphI	GGTGA	4 cut(s)	79, 101, 247, 434
Hpy166II	GTNNAC	4 cut(s)	70, 95, 399, 436
Hpy188I	TCNGA	3 cut(s)	40, 214, 512
Hpy188III	TCNNGA	3 cut(s)	122, 200, 593
Hpy8I	GTNNAC	4 cut(s)	70, 95, 399, 436
Hpy99I	CGWCG	1 cut(s)	512
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	1 cut(s)	321
HpyCH4V	TGCA	3 cut(s)	308, 357, 533
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 314, 323, 332, 375, 462, 557
HpyF3I	CTNAG	3 cut(s)	37, 273, 386
Hsp92II	CATG	6 cut(s)	125, 167, 369, 505, 521, 589
HspAI	GCGC	1 cut(s)	456
KspI	CCGCGG	1 cut(s)	561
Kzo9I	GATC	1 cut(s)	214
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	4 cut(s)	151, 314, 383, 486
Lsp1109I	GCAGC	3 cut(s)	212, 215, 403
LweI	GCATC	6 cut(s)	31, 126, 127, 133, 366, 520
MaeI	CTAG	1 cut(s)	168
MaeIII	GTNAC	2 cut(s)	253, 340
MalI	GATC	1 cut(s)	216
MbiI	CCGCTC	1 cut(s)	378
MboI	GATC	1 cut(s)	214
MboII	GAAGA	1 cut(s)	38
MhlI	GDGCHC	4 cut(s)	319, 416, 483, 567
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	1 cut(s)	19
MluI	ACGCGT	1 cut(s)	324
MluNI	TGGCCA	1 cut(s)	264
MlyI	GAGTC	1 cut(s)	598
MmeI	TCCRAC	1 cut(s)	490
MnlI	CCTC	5 cut(s)	16, 159, 381, 571, 574
Mox20I	TGGCCA	1 cut(s)	264
MscI	TGGCCA	1 cut(s)	264
MslI	CAYNNNNRTG	2 cut(s)	162, 241
Msp20I	TGGCCA	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	560
MspI	CCGG	3 cut(s)	50, 65, 140
MspR9I	CCNGG	1 cut(s)	467
MvaI	CCWGG	1 cut(s)	467
MvnI	CGCG	4 cut(s)	326, 477, 492, 560
MwoI	GCNNNNNNNGC	7 cut(s)	50, 314, 323, 332, 375, 462, 557
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	6 cut(s)	125, 167, 369, 505, 521, 589
NlaIV	GGNNCC	2 cut(s)	539, 564
NmuCI	GTSAC	2 cut(s)	253, 340
OliI	CACNNNNGTG	1 cut(s)	241
PagI	TCATGA	1 cut(s)	121
PciSI	GCTCTTC	1 cut(s)	51
Pfl23II	CGTACG	1 cut(s)	24
PflMI	CCANNNNNTGG	1 cut(s)	547
PkrI	GCNGC	4 cut(s)	227, 230, 393, 559
PleI	GAGTC	1 cut(s)	597
PpsI	GAGTC	1 cut(s)	597
Psp124BI	GAGCTC	1 cut(s)	483
Psp6I	CCWGG	1 cut(s)	465
PspGI	CCWGG	1 cut(s)	465
PspLI	CGTACG	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	539, 564
PsrI	GAACNNNNNNTAC	2 cut(s)	17, 49
RsaI	GTAC	4 cut(s)	26, 323, 398, 473
RsaNI	GTAC	4 cut(s)	25, 322, 397, 472
RseI	CAYNNNNRTG	2 cut(s)	162, 241
SacI	GAGCTC	1 cut(s)	483
SacII	CCGCGG	1 cut(s)	561
SapI	GCTCTTC	1 cut(s)	51
SatI	GCNGC	4 cut(s)	226, 229, 392, 558
Sau3AI	GATC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	598
ScrFI	CCNGG	1 cut(s)	467
SduI	GDGCHC	4 cut(s)	319, 416, 483, 567
SetI	ASST	5 cut(s)	100, 227, 260, 337, 483
SfaNI	GCATC	6 cut(s)	31, 126, 127, 133, 366, 520
Sfr303I	CCGCGG	1 cut(s)	561
SgrBI	CCGCGG	1 cut(s)	561
SmiMI	CAYNNNNRTG	2 cut(s)	162, 241
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	5 cut(s)	376, 475, 492, 558, 560
SspMI	CTAG	1 cut(s)	168
SstI	GAGCTC	1 cut(s)	483
StyD4I	CCNGG	1 cut(s)	465
StyI	CCWWGG	1 cut(s)	182
TaaI	ACNGT	1 cut(s)	321
TasI	AATT	1 cut(s)	19
TatI	WGTACW	1 cut(s)	396
TauI	GCSGC	1 cut(s)	560
TscAI	CASTG	2 cut(s)	324, 443
TseFI	GTSAC	2 cut(s)	253, 340
TseI	GCWGC	3 cut(s)	225, 228, 391
Tsp45I	GTSAC	2 cut(s)	253, 340
TspDTI	ATGAA	1 cut(s)	354
TspRI	CASTG	2 cut(s)	324, 443
Van91I	CCANNNNNTGG	1 cut(s)	547
XagI	CCTNNNNNAGG	1 cut(s)	464
XapI	RAATTY	1 cut(s)	19
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.