Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000122.1

Orthogroup ID

OG0000741

Physical Location & Seq

Genomic Coordinates Reverse (-)

74966 .. 77315

Gene Structure 2350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000122.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atgtactcatcaaagccgagttcttacgagaagttctcggagaccaccgatgcttctccgccaacgggtattccggtgagctccagcaacccctattatagtcatcctgctcatcatcaacatcctaatcaatatgacaagagcaactctgagatgcctgctcctcatccttatcaacaccacactaaagcccctgaaccgtggaaatccggcctctgcgactgcttctccgatcccaaaaactgctgcataaccttctgttgtccatgcatcacttttggtcaaattgctgagattgtggacaaaggttctacatcttgtggtgcaagtggagcactgtacacactgattgcttgtgtgactacttgtccttgcatctattcatgcttctaccgctcgaagatgaggcggcagtacgctttggaatcgagcccttgtggtgattgtttggttcatttcttctgcgagcaatgcgccttgtgccaggagtaccgtgagctcaagagtcgcggttttgacatggccatcggatggcatggaaatatcgaagaaaggaaccgtgaagtggcaatggctccaatgcccccaatgtcgaccaatatgttgtccggcgtgtggtggtgggctggaacaataatgatgaagctgcgaggttgggcctgcttttggggaaggatttcggcagagttggtggccagaattaaccttgcaagcttcagaccttttgtggaggtgcccggaaagccagagtcgactctgactgatatgaaaacggtttgtagtggtcttttaggtgcccggaaagccagagtcgactctgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

274

Amino Acids

30.57

Weight (kDa)

7.45

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14870 AT1G14870 AT1G14880 AT5G35525
fragaria_vesca	FvH4_4g33890 FvH4_4g33900 FvH4_4g33900 FvH4_4g33930 FvH4_4g34200
malus_domestica	MD16G1021300.v1.1 MD16G1021400.v1.1
prunus_persica	Prupe.1G331100_v2.0.a1
pyrus_communis	pycom13g01870 pycom16g01900 pycom16g01910
rosa_chinensis	RchiOBHm_Chr0c23g0500741 RchiOBHm_Chr4g0409091 RchiOBHm_Chr4g0443411 RchiOBHm_Chr4g0443421 RchiOBHm_Chr4g0443431 RchiOBHm_Chr4g0443441 RchiOBHm_Chr4g0443451 RchiOBHm_Chr4g0443461 RchiOBHm_Chr5g0070111
rosa_laevigata	RLG00000005927 RLG00000005928 RLG00000005929 RLG00000005930 RLG00000019779
rosa_multiflora	Rmu_co8363857.1_g000001 Rmu_co8469801.1_g000001 Rmu_sc0001669.1_g000019 Rmu_sc0004836.1_g000022 Rmu_sc0004849.1_g000015 Rmu_sc0009670.1_g000002 Rmu_ssc0000122.1_g000016 Rmu_ssc0000122.1_g000017
rosa_roxburghii	Rroxscaffold_3G00257420 Rroxscaffold_5G00383970 Rroxscaffold_5G00383980 Rroxscaffold_5G00384010
rosa_rugosa	Rorug04G0346000 Rorug04G0346100 Rorug04G0346200 Rorug04G0346400 Rorug05G0555800
rosa_samantha	Rh4AG154100 Rh4AG401500 Rh4AG401600 Rh4AG401700 Rh4AG401800 Rh4AG401900 Rh4BG412900 Rh4BG413100 Rh4BG413200 Rh4BG413300 Rh4CG162800 Rh4CG428600 Rh4CG428700 Rh4CG428800 Rh4CG428900 Rh4CG429000 Rh4DG408700 Rh4DG408800 Rh4DG408900 Rh4DG409000
rosa_wichuraiana	Rw4G004920 Rw4G034620 Rw4G034630 Rw4G034640 Rw4G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	733, 794
AccB7I	CCANNNNNTGG	1 cut(s)	531
AccBSI	CCGCTC	1 cut(s)	396
AccI	GTMKAC	3 cut(s)	593, 752, 813
AccII	CGCG	1 cut(s)	510
AciI	CCGC	4 cut(s)	59, 394, 409, 510
AclWI	GGATC	1 cut(s)	227
AcoI	YGGCCR	2 cut(s)	522, 693
AcuI	CTGAAG	1 cut(s)	700
AfaI	GTAC	4 cut(s)	5, 341, 416, 491
AfiI	CCNNNNNNNGG	5 cut(s)	65, 531, 565, 615, 666
AhdI	GACNNNNNGTC	1 cut(s)	366
AjnI	CCWGG	1 cut(s)	483
AluBI	AGCT	4 cut(s)	81, 499, 646, 714
AluI	AGCT	4 cut(s)	81, 499, 646, 714
Alw21I	GWGCWC	3 cut(s)	83, 337, 501
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	1 cut(s)	227
AoxI	GGCC	4 cut(s)	211, 522, 657, 693
ApeKI	GCWGC	2 cut(s)	246, 646
Asp700I	GAANNNNTTC	1 cut(s)	676
AspLEI	GCGC	1 cut(s)	476
AspS9I	GGNCC	1 cut(s)	657
AsuC2I	CCSGG	2 cut(s)	738, 799
AsuHPI	GGTGA	2 cut(s)	88, 452
BaeGI	GKGCMC	2 cut(s)	738, 799
BalI	TGGCCA	2 cut(s)	524, 695
BanI	GGYRCC	2 cut(s)	733, 794
BanII	GRGCYC	3 cut(s)	83, 434, 501
Bbv12I	GWGCWC	3 cut(s)	83, 337, 501
BbvI	GCAGC	2 cut(s)	233, 633
BccI	CCATC	2 cut(s)	525, 533
BciT130I	CCWGG	1 cut(s)	485
BcnI	CCSGG	2 cut(s)	738, 799
BcoDI	GTCTC	1 cut(s)	35
BisI	GCNGC	3 cut(s)	247, 410, 647
BlsI	GCNGC	3 cut(s)	248, 411, 648
Bme1390I	CCNGG	3 cut(s)	485, 738, 799
BmeRI	GACNNNNNGTC	1 cut(s)	366
BmgT120I	GGNCC	1 cut(s)	657
BmiI	GGNNCC	4 cut(s)	557, 576, 735, 796
BmrFI	CCNGG	3 cut(s)	485, 738, 799
BmsI	GCATC	4 cut(s)	40, 144, 279, 384
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	1 cut(s)	67
BpuEI	CTTGAG	1 cut(s)	485
BpuMI	CCSGG	2 cut(s)	738, 799
BsaI	GGTCTC	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	200
BsaWI	WCCGGW	1 cut(s)	73
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	5 cut(s)	65, 531, 565, 615, 666
Bse3DI	GCAATG	2 cut(s)	476, 576
BseBI	CCWGG	1 cut(s)	485
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	4 cut(s)	103, 121, 166, 536
BseLI	CCNNNNNNNGG	5 cut(s)	65, 531, 565, 615, 666
BseMI	GCAATG	2 cut(s)	476, 576
BseMII	CTCAG	2 cut(s)	141, 282
BseRI	GAGGAG	1 cut(s)	153
BseSI	GKGCMC	2 cut(s)	738, 799
BseXI	GCAGC	2 cut(s)	233, 633
Bsh1236I	CGCG	1 cut(s)	510
BshFI	GGCC	4 cut(s)	213, 524, 659, 695
BshNI	GGYRCC	2 cut(s)	733, 794
BsiHKAI	GWGCWC	3 cut(s)	83, 337, 501
BsiSI	CCGG	5 cut(s)	74, 210, 609, 738, 799
BslI	CCNNNNNNNGG	5 cut(s)	65, 531, 565, 615, 666
BsmAI	GTCTC	1 cut(s)	35
BsnI	GGCC	4 cut(s)	213, 524, 659, 695
Bso31I	GGTCTC	1 cut(s)	35
Bsp1286I	GDGCHC	6 cut(s)	83, 337, 434, 501, 738, 799
Bsp1407I	TGTACA	1 cut(s)	339
Bsp143I	GATC	1 cut(s)	232
BspACI	CCGC	4 cut(s)	59, 394, 409, 510
BspANI	GGCC	4 cut(s)	213, 524, 659, 695
BspCNI	CTCAG	2 cut(s)	142, 283
BspFNI	CGCG	1 cut(s)	510
BspLI	GGNNCC	4 cut(s)	557, 576, 735, 796
BspPI	GGATC	1 cut(s)	227
BspT107I	GGYRCC	2 cut(s)	733, 794
BspTNI	GGTCTC	1 cut(s)	35
BsrBI	CCGCTC	1 cut(s)	396
BsrDI	GCAATG	2 cut(s)	476, 576
BsrGI	TGTACA	1 cut(s)	339
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	1 cut(s)	232
Bst2UI	CCWGG	1 cut(s)	485
Bst4CI	ACNGT	5 cut(s)	201, 339, 494, 560, 775
BstAUI	TGTACA	1 cut(s)	339
BstC8I	GCNNGC	4 cut(s)	159, 467, 661, 712
BstDEI	CTNAG	2 cut(s)	150, 291
BstDSI	CCRYGG	1 cut(s)	200
BstF5I	GGATG	4 cut(s)	103, 121, 166, 536
BstFNI	CGCG	1 cut(s)	510
BstHHI	GCGC	1 cut(s)	476
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	6 cut(s)	332, 393, 471, 480, 742, 803
BstNI	CCWGG	1 cut(s)	485
BstSCI	CCNGG	3 cut(s)	483, 736, 797
BstSLI	GKGCMC	2 cut(s)	738, 799
BstUI	CGCG	1 cut(s)	510
BstV1I	GCAGC	2 cut(s)	233, 633
BsuRI	GGCC	4 cut(s)	213, 524, 659, 695
BtgI	CCRYGG	1 cut(s)	200
BtsCI	GGATG	4 cut(s)	103, 121, 166, 536
BtsIMutI	CAGTG	2 cut(s)	335, 344
Cac8I	GCNNGC	4 cut(s)	159, 467, 661, 712
CfoI	GCGC	1 cut(s)	476
Cfr13I	GGNCC	1 cut(s)	657
Csp6I	GTAC	4 cut(s)	4, 340, 415, 490
CviAII	CATG	4 cut(s)	267, 384, 520, 536
CviQI	GTAC	4 cut(s)	4, 340, 415, 490
DdeI	CTNAG	2 cut(s)	150, 291
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
DriI	GACNNNNNGTC	1 cut(s)	366
EaeI	YGGCCR	2 cut(s)	522, 693
Eam1105I	GACNNNNNGTC	1 cut(s)	366
EciI	GGCGGA	1 cut(s)	48
Ecl136II	GAGCTC	2 cut(s)	81, 499
Eco24I	GRGCYC	3 cut(s)	83, 434, 501
Eco31I	GGTCTC	1 cut(s)	35
Eco53kI	GAGCTC	2 cut(s)	81, 499
Eco57I	CTGAAG	1 cut(s)	700
EcoICRI	GAGCTC	2 cut(s)	81, 499
EcoRII	CCWGG	1 cut(s)	483
EcoT22I	ATGCAT	1 cut(s)	272
EcoT38I	GRGCYC	3 cut(s)	83, 434, 501
FaeI	CATG	4 cut(s)	270, 387, 523, 539
FaiI	YATR	9 cut(s)	99, 135, 251, 268, 385, 521, 537, 602, 767
FatI	CATG	4 cut(s)	266, 383, 519, 535
FblI	GTMKAC	3 cut(s)	593, 752, 813
Fnu4HI	GCNGC	3 cut(s)	247, 410, 647
FokI	GGATG	4 cut(s)	90, 108, 153, 543
FriOI	GRGCYC	3 cut(s)	83, 434, 501
Fsp4HI	GCNGC	3 cut(s)	247, 410, 647
GlaI	GCGC	1 cut(s)	475
GluI	GCNGC	3 cut(s)	247, 410, 647
GsuI	CTGGAG	1 cut(s)	67
HaeIII	GGCC	4 cut(s)	213, 524, 659, 695
HapII	CCGG	5 cut(s)	74, 210, 609, 738, 799
HhaI	GCGC	1 cut(s)	476
Hin1II	CATG	4 cut(s)	270, 387, 523, 539
Hin6I	GCGC	1 cut(s)	474
HinP1I	GCGC	1 cut(s)	474
HincII	GTYRAC	3 cut(s)	594, 753, 814
HindII	GTYRAC	3 cut(s)	594, 753, 814
HindIII	AAGCTT	1 cut(s)	712
HinfI	GANTC	6 cut(s)	425, 505, 749, 754, 810, 815
HpaII	CCGG	5 cut(s)	74, 210, 609, 738, 799
HphI	GGTGA	2 cut(s)	88, 452
Hpy166II	GTNNAC	5 cut(s)	301, 342, 594, 753, 814
Hpy188I	TCNGA	7 cut(s)	40, 151, 232, 530, 719, 759, 820
Hpy188III	TCNNGA	1 cut(s)	502
Hpy8I	GTNNAC	5 cut(s)	301, 342, 594, 753, 814
HpyAV	CCTTC	2 cut(s)	265, 666
HpyCH4III	ACNGT	5 cut(s)	201, 339, 494, 560, 775
HpyCH4V	TGCA	5 cut(s)	249, 270, 326, 375, 710
HpyF10VI	GCNNNNNNNGC	6 cut(s)	332, 393, 471, 480, 742, 803
HpyF3I	CTNAG	2 cut(s)	150, 291
Hsp92II	CATG	4 cut(s)	270, 387, 523, 539
HspAI	GCGC	1 cut(s)	474
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	4 cut(s)	86, 166, 332, 580
Lsp1109I	GCAGC	2 cut(s)	233, 633
LweI	GCATC	4 cut(s)	40, 144, 279, 384
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	1 cut(s)	234
MbiI	CCGCTC	1 cut(s)	396
MboI	GATC	1 cut(s)	232
MboII	GAAGA	3 cut(s)	412, 451, 560
MhlI	GDGCHC	6 cut(s)	83, 337, 434, 501, 738, 799
MlsI	TGGCCA	2 cut(s)	524, 695
MluCI	AATT	2 cut(s)	285, 699
MluNI	TGGCCA	2 cut(s)	524, 695
MlyI	GAGTC	5 cut(s)	514, 748, 758, 809, 819
MnlI	CCTC	5 cut(s)	174, 224, 399, 644, 724
Mox20I	TGGCCA	2 cut(s)	524, 695
Mph1103I	ATGCAT	1 cut(s)	272
MroXI	GAANNNNTTC	1 cut(s)	676
MscI	TGGCCA	2 cut(s)	524, 695
MseI	TTAA	1 cut(s)	702
Msp20I	TGGCCA	2 cut(s)	524, 695
MspI	CCGG	5 cut(s)	74, 210, 609, 738, 799
MspR9I	CCNGG	3 cut(s)	485, 738, 799
MvaI	CCWGG	1 cut(s)	485
MvnI	CGCG	1 cut(s)	510
MwoI	GCNNNNNNNGC	6 cut(s)	332, 393, 471, 480, 742, 803
NciI	CCSGG	2 cut(s)	738, 799
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	4 cut(s)	270, 387, 523, 539
NlaIV	GGNNCC	4 cut(s)	557, 576, 735, 796
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	358
NsiI	ATGCAT	1 cut(s)	272
PdmI	GAANNNNTTC	1 cut(s)	676
PfeI	GAWTC	1 cut(s)	425
PflMI	CCANNNNNTGG	1 cut(s)	531
PkrI	GCNGC	3 cut(s)	248, 411, 648
PleI	GAGTC	5 cut(s)	513, 748, 757, 809, 818
PpsI	GAGTC	5 cut(s)	513, 748, 757, 809, 818
Psp124BI	GAGCTC	2 cut(s)	83, 501
Psp6I	CCWGG	1 cut(s)	483
PspGI	CCWGG	1 cut(s)	483
PspN4I	GGNNCC	4 cut(s)	557, 576, 735, 796
PspPI	GGNCC	1 cut(s)	657
RsaI	GTAC	4 cut(s)	5, 341, 416, 491
RsaNI	GTAC	4 cut(s)	4, 340, 415, 490
SacI	GAGCTC	2 cut(s)	83, 501
SalI	GTCGAC	3 cut(s)	592, 751, 812
SaqAI	TTAA	1 cut(s)	702
SatI	GCNGC	3 cut(s)	247, 410, 647
Sau3AI	GATC	1 cut(s)	232
Sau96I	GGNCC	1 cut(s)	657
SchI	GAGTC	5 cut(s)	514, 748, 758, 809, 819
ScrFI	CCNGG	3 cut(s)	485, 738, 799
SduI	GDGCHC	6 cut(s)	83, 337, 434, 501, 738, 799
SfaNI	GCATC	4 cut(s)	40, 144, 279, 384
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
Sse9I	AATT	2 cut(s)	285, 699
SsiI	CCGC	4 cut(s)	59, 394, 409, 510
SstI	GAGCTC	2 cut(s)	83, 501
StyD4I	CCNGG	3 cut(s)	483, 736, 797
TaaI	ACNGT	5 cut(s)	201, 339, 494, 560, 775
TaqI	TCGA	6 cut(s)	398, 428, 546, 593, 752, 813
TasI	AATT	2 cut(s)	285, 699
TatI	WGTACW	2 cut(s)	3, 339
TauI	GCSGC	1 cut(s)	412
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	1 cut(s)	702
Tru9I	TTAA	1 cut(s)	702
TscAI	CASTG	2 cut(s)	342, 351
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	2 cut(s)	246, 646
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	4 cut(s)	372, 443, 656, 782
TspRI	CASTG	2 cut(s)	342, 351
Van91I	CCANNNNNTGG	1 cut(s)	531
XmiI	GTMKAC	3 cut(s)	593, 752, 813
XmnI	GAANNNNTTC	1 cut(s)	676
Zsp2I	ATGCAT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.