RLG00000019779

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000741
Physical Location & Seq
Reverse (-)
56631319 .. 56633336
2018 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019779

Sequence Viewer

Length: 624 bp
ATGGTGGAGCGGGGCTGCGTTACAAGCGCGTGGGGGCTCGACGCTGGCAGAGGACGGCGTAGTCGATTTGGGTTCCAATGCTTGGAGTCGACCACAAAGCTGTCTGGTGCTACATGGCGGGCTGAAACGAGATTGATGGAGCAACGAGGTTTGGTATTCTCGGTGGGTTCGCAAGGAGTAGGAGTTTCTGGTCAAGGGAGGAGCGGGTTGGCATGGTGGAAGGATGGTTCTCGATCTCTAGTCTCCACTGAGATTAGATTTGGGTTTGATGGCTACGGAAAGGAATGGTGGGATTTCTTTCTAGAGTGGGGTTGGCCGCGCCTCTATCCTTTGCCTAGATGCTTGAGATTTGGATTTGAGTTAACTGACCTCGCAAGCTCTCATCTTATTGTGGCGATTTCCGGGAAGCTAGAGTCAACTTTGAGGGAATGGAAAGCGTCAGGGCCAACAGTTGCACCAGGTGGAACACACTCCAAGTACGGGCAACGAATAATGTGTTGGTGGTCATCACCACAAATCCGACACCCTTCTTCAGGCTTCTCCTTCGCCTTCTCCTTACCGCCGGCTGCTGATCTCGCTGTGATTCCAGAAATGTCCATATCTAAGGGCTTGGTGCTCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

22.87

Weight (kDa)

9.58

Isoelectric Point (pI)

35.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 60
AccB7I CCANNNNNTGG 1 cut(s) 82
AccBSI CCGCTC 2 cut(s) 10, 204
AccI GTMKAC 1 cut(s) 89
AccII CGCG 2 cut(s) 29, 319
AciI CCGC 5 cut(s) 10, 118, 204, 317, 560
AcoI YGGCCR 1 cut(s) 314
AcuI CTGAAG 1 cut(s) 516
AdeI CACNNNGTG 1 cut(s) 461
AfaI GTAC 1 cut(s) 479
AfiI CCNNNNNNNGG 3 cut(s) 82, 480, 533
AjnI CCWGG 1 cut(s) 457
AjuI GAANNNNNNNTTGG 2 cut(s) 481, 513
AloI GAACNNNNNNTCC 2 cut(s) 211, 243
AluBI AGCT 3 cut(s) 100, 378, 409
AluI AGCT 3 cut(s) 100, 378, 409
Alw21I GWGCWC 1 cut(s) 618
Alw26I GTCTC 1 cut(s) 247
Ama87I CYCGRG 1 cut(s) 617
AoxI GGCC 2 cut(s) 314, 443
ApeKI GCWGC 2 cut(s) 15, 566
AspLEI GCGC 2 cut(s) 29, 321
AspS9I GGNCC 1 cut(s) 443
AsuC2I CCSGG 1 cut(s) 403
AsuHPI GGTGA 1 cut(s) 501
AvaI CYCGRG 1 cut(s) 617
BanII GRGCYC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 618
BbvI GCAGC 2 cut(s) 2, 553
BccI CCATC 3 cut(s) 130, 218, 263
BceAI ACGGC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 459
BcnI CCSGG 1 cut(s) 403
BcoDI GTCTC 1 cut(s) 247
BfaI CTAG 4 cut(s) 239, 302, 336, 410
BisI GCNGC 3 cut(s) 16, 317, 567
BlsI GCNGC 3 cut(s) 17, 318, 568
Bme1390I CCNGG 2 cut(s) 403, 459
BmeT110I CYCGRG 1 cut(s) 617
BmgT120I GGNCC 1 cut(s) 443
BmiI GGNNCC 1 cut(s) 74
BmrFI CCNGG 2 cut(s) 403, 459
BmsI GCATC 1 cut(s) 329
BpuEI CTTGAG 1 cut(s) 364
BpuMI CCSGG 1 cut(s) 403
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 480, 533
Bse118I RCCGGY 1 cut(s) 562
BseBI CCWGG 1 cut(s) 459
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 3 cut(s) 82, 480, 533
BseMII CTCAG 1 cut(s) 240
BseRI GAGGAG 1 cut(s) 214
BseXI GCAGC 2 cut(s) 2, 553
Bsh1236I CGCG 2 cut(s) 29, 319
BshFI GGCC 2 cut(s) 316, 445
BsiHKAI GWGCWC 1 cut(s) 618
BsiHKCI CYCGRG 1 cut(s) 617
BsiSI CCGG 2 cut(s) 402, 563
BslI CCNNNNNNNGG 3 cut(s) 82, 480, 533
BsmAI GTCTC 1 cut(s) 247
BsnI GGCC 2 cut(s) 316, 445
BsoBI CYCGRG 1 cut(s) 617
Bsp1286I GDGCHC 2 cut(s) 39, 618
Bsp143I GATC 2 cut(s) 233, 571
BspACI CCGC 5 cut(s) 10, 118, 204, 317, 560
BspANI GGCC 2 cut(s) 316, 445
BspCNI CTCAG 1 cut(s) 241
BspFNI CGCG 2 cut(s) 29, 319
BspLI GGNNCC 1 cut(s) 74
BsrBI CCGCTC 2 cut(s) 10, 204
BsrFI RCCGGY 1 cut(s) 562
BssAI RCCGGY 1 cut(s) 562
BssMI GATC 2 cut(s) 233, 571
Bst2UI CCWGG 1 cut(s) 459
Bst4CI ACNGT 1 cut(s) 451
BstC8I GCNNGC 4 cut(s) 46, 120, 376, 564
BstDEI CTNAG 2 cut(s) 249, 603
BstENI CCTNNNNNAGG 1 cut(s) 531
BstF5I GGATG 1 cut(s) 229
BstFNI CGCG 2 cut(s) 29, 319
BstHHI GCGC 2 cut(s) 29, 321
BstKTI GATC 2 cut(s) 236, 574
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 2 cut(s) 233, 571
BstMWI GCNNNNNNNGC 2 cut(s) 24, 575
BstNI CCWGG 1 cut(s) 459
BstSCI CCNGG 2 cut(s) 401, 457
BstUI CGCG 2 cut(s) 29, 319
BstV1I GCAGC 2 cut(s) 2, 553
BsuRI GGCC 2 cut(s) 316, 445
BtsCI GGATG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 246
Cac8I GCNNGC 4 cut(s) 46, 120, 376, 564
CfoI GCGC 2 cut(s) 29, 321
Cfr10I RCCGGY 1 cut(s) 562
Cfr13I GGNCC 1 cut(s) 443
CseI GACGC 2 cut(s) 50, 426
CsiI ACCWGGT 1 cut(s) 457
Csp6I GTAC 1 cut(s) 478
CviAII CATG 2 cut(s) 114, 213
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 2 cut(s) 249, 603
DpnI GATC 2 cut(s) 235, 573
DpnII GATC 2 cut(s) 233, 571
DraIII CACNNNGTG 1 cut(s) 461
DrdI GACNNNNNNGTC 1 cut(s) 60
DseDI GACNNNNNNGTC 1 cut(s) 60
EaeI YGGCCR 1 cut(s) 314
Eco24I GRGCYC 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 516
Eco88I CYCGRG 1 cut(s) 617
EcoNI CCTNNNNNAGG 1 cut(s) 531
EcoRII CCWGG 1 cut(s) 457
EcoT38I GRGCYC 1 cut(s) 39
FaeI CATG 2 cut(s) 117, 216
FaiI YATR 3 cut(s) 115, 214, 599
FatI CATG 2 cut(s) 113, 212
FauI CCCGC 3 cut(s) 3, 111, 197
FblI GTMKAC 1 cut(s) 89
Fnu4HI GCNGC 3 cut(s) 16, 317, 567
FokI GGATG 1 cut(s) 236
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 3 cut(s) 16, 317, 567
FspBI CTAG 4 cut(s) 239, 302, 336, 410
GlaI GCGC 2 cut(s) 28, 320
GluI GCNGC 3 cut(s) 16, 317, 567
HaeIII GGCC 2 cut(s) 316, 445
HapII CCGG 2 cut(s) 402, 563
HgaI GACGC 2 cut(s) 50, 426
HhaI GCGC 2 cut(s) 29, 321
Hin1II CATG 2 cut(s) 117, 216
Hin6I GCGC 2 cut(s) 27, 319
HinP1I GCGC 2 cut(s) 27, 319
HincII GTYRAC 3 cut(s) 90, 363, 417
HindII GTYRAC 3 cut(s) 90, 363, 417
HinfI GANTC 3 cut(s) 86, 413, 583
HpaI GTTAAC 1 cut(s) 363
HpaII CCGG 2 cut(s) 402, 563
HphI GGTGA 1 cut(s) 501
Hpy166II GTNNAC 3 cut(s) 90, 363, 417
Hpy188I TCNGA 1 cut(s) 521
Hpy188III TCNNGA 3 cut(s) 231, 302, 587
Hpy8I GTNNAC 3 cut(s) 90, 363, 417
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 4 cut(s) 214, 537, 553, 559
HpyCH4III ACNGT 1 cut(s) 451
HpyCH4V TGCA 1 cut(s) 455
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 575
HpyF3I CTNAG 2 cut(s) 249, 603
Hsp92II CATG 2 cut(s) 117, 216
HspAI GCGC 2 cut(s) 27, 319
KroI GCCGGC 1 cut(s) 562
KroNI GCCGGC 1 cut(s) 564
KspAI GTTAAC 1 cut(s) 363
Kzo9I GATC 2 cut(s) 233, 571
LmnI GCTCC 3 cut(s) 7, 139, 201
Lsp1109I GCAGC 2 cut(s) 2, 553
LweI GCATC 1 cut(s) 329
MabI ACCWGGT 1 cut(s) 457
MaeI CTAG 4 cut(s) 239, 302, 336, 410
MaeIII GTNAC 1 cut(s) 19
MalI GATC 2 cut(s) 235, 573
MbiI CCGCTC 2 cut(s) 10, 204
MboI GATC 2 cut(s) 233, 571
MboII GAAGA 1 cut(s) 522
MhlI GDGCHC 2 cut(s) 39, 618
MlyI GAGTC 2 cut(s) 95, 422
MmeI TCCRAC 1 cut(s) 544
MnlI CCTC 6 cut(s) 44, 140, 192, 332, 380, 417
MroNI GCCGGC 1 cut(s) 562
MseI TTAA 1 cut(s) 362
MspI CCGG 2 cut(s) 402, 563
MspR9I CCNGG 2 cut(s) 403, 459
MvaI CCWGG 1 cut(s) 459
MvnI CGCG 2 cut(s) 29, 319
MwoI GCNNNNNNNGC 2 cut(s) 24, 575
NaeI GCCGGC 1 cut(s) 564
NciI CCSGG 1 cut(s) 403
NdeII GATC 2 cut(s) 233, 571
NgoMIV GCCGGC 1 cut(s) 562
NlaIII CATG 2 cut(s) 117, 216
NlaIV GGNNCC 1 cut(s) 74
PcsI WCGNNNNNNNCGW 1 cut(s) 61
PdiI GCCGGC 1 cut(s) 564
PfeI GAWTC 1 cut(s) 583
PflMI CCANNNNNTGG 1 cut(s) 82
PfoI TCCNGGA 1 cut(s) 401
PkrI GCNGC 3 cut(s) 17, 318, 568
PleI GAGTC 2 cut(s) 94, 421
PpsI GAGTC 2 cut(s) 94, 421
Psp6I CCWGG 1 cut(s) 457
PspGI CCWGG 1 cut(s) 457
PspN4I GGNNCC 1 cut(s) 74
PspPI GGNCC 1 cut(s) 443
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
SalI GTCGAC 1 cut(s) 88
SaqAI TTAA 1 cut(s) 362
SatI GCNGC 3 cut(s) 16, 317, 567
Sau3AI GATC 2 cut(s) 233, 571
Sau96I GGNCC 1 cut(s) 443
SchI GAGTC 2 cut(s) 95, 422
ScrFI CCNGG 2 cut(s) 403, 459
SduI GDGCHC 2 cut(s) 39, 618
SetI ASST 6 cut(s) 102, 151, 372, 380, 411, 463
SexAI ACCWGGT 1 cut(s) 457
SfaNI GCATC 1 cut(s) 329
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
SsiI CCGC 5 cut(s) 10, 118, 204, 317, 560
SspMI CTAG 4 cut(s) 239, 302, 336, 410
StyD4I CCNGG 2 cut(s) 401, 457
TaaI ACNGT 1 cut(s) 451
TaqI TCGA 4 cut(s) 39, 64, 89, 232
TauI GCSGC 1 cut(s) 319
TfiI GAWTC 1 cut(s) 583
Tru1I TTAA 1 cut(s) 362
Tru9I TTAA 1 cut(s) 362
TscAI CASTG 1 cut(s) 253
TseI GCWGC 2 cut(s) 15, 566
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 1 cut(s) 253
Van91I CCANNNNNTGG 1 cut(s) 82
XagI CCTNNNNNAGG 1 cut(s) 531
XbaI TCTAGA 1 cut(s) 301
XmiI GTMKAC 1 cut(s) 89
XspI CTAG 4 cut(s) 239, 302, 336, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.