Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000741

Physical Location & Seq

Genomic Coordinates Reverse (-)

51794895 .. 51795856

Gene Structure 962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00257420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGTGGATCGGGGCCTTGCTGCAGATGCAAAAGGGTTCAACGCCGGCCAAGGGCAACGTAGTCTATCCGGGTTCCTTAACTTGCGGTCGACCATTGCGTTGTCCGGTGTTTGGTGGTGGGCTGAAACGAAAATGATGGTGCTGCGAGGTTTGGTTTGCTCGTTGGGAACGGATTCGGGCAACGGTGGTCGGCGAACCAACCTTGCAAGTTTCGGACCTTTTGTGGCGGTTACGGGAAAGCCGGAGTCGATTCGACGGACAAAAAAATGGATCACAATGGCTTGCAAACTTCAATTTATTGACCCATGCATTTTCCTATACGTCTTATTACAACACTCAACCAGCTCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

12.77

Weight (kDa)

10.15

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14870 AT1G14870 AT1G14880 AT5G35525
fragaria_vesca	FvH4_4g33890 FvH4_4g33900 FvH4_4g33900 FvH4_4g33930 FvH4_4g34200
malus_domestica	MD16G1021300.v1.1 MD16G1021400.v1.1
prunus_persica	Prupe.1G331100_v2.0.a1
pyrus_communis	pycom13g01870 pycom16g01900 pycom16g01910
rosa_chinensis	RchiOBHm_Chr0c23g0500741 RchiOBHm_Chr4g0409091 RchiOBHm_Chr4g0443411 RchiOBHm_Chr4g0443421 RchiOBHm_Chr4g0443431 RchiOBHm_Chr4g0443441 RchiOBHm_Chr4g0443451 RchiOBHm_Chr4g0443461 RchiOBHm_Chr5g0070111
rosa_laevigata	RLG00000005927 RLG00000005928 RLG00000005929 RLG00000005930 RLG00000019779
rosa_multiflora	Rmu_co8363857.1_g000001 Rmu_co8469801.1_g000001 Rmu_sc0001669.1_g000019 Rmu_sc0004836.1_g000022 Rmu_sc0004849.1_g000015 Rmu_sc0009670.1_g000002 Rmu_ssc0000122.1_g000016 Rmu_ssc0000122.1_g000017
rosa_roxburghii	Rroxscaffold_3G00257420 Rroxscaffold_5G00383970 Rroxscaffold_5G00383980 Rroxscaffold_5G00384010
rosa_rugosa	Rorug04G0346000 Rorug04G0346100 Rorug04G0346200 Rorug04G0346400 Rorug05G0555800
rosa_samantha	Rh4AG154100 Rh4AG401500 Rh4AG401600 Rh4AG401700 Rh4AG401800 Rh4AG401900 Rh4BG412900 Rh4BG413100 Rh4BG413200 Rh4BG413300 Rh4CG162800 Rh4CG428600 Rh4CG428700 Rh4CG428800 Rh4CG428900 Rh4CG429000 Rh4DG408700 Rh4DG408800 Rh4DG408900 Rh4DG409000
rosa_wichuraiana	Rw4G004920 Rw4G034620 Rw4G034630 Rw4G034640 Rw4G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	89
AciI	CCGC	2 cut(s)	85, 227
AclWI	GGATC	2 cut(s)	15, 278
AcoI	YGGCCR	1 cut(s)	46
AfiI	CCNNNNNNNGG	2 cut(s)	51, 111
AgsI	TTSAA	2 cut(s)	40, 293
AluBI	AGCT	1 cut(s)	345
AluI	AGCT	1 cut(s)	345
AlwI	GGATC	2 cut(s)	15, 278
AoxI	GGCC	2 cut(s)	13, 46
ApeKI	GCWGC	2 cut(s)	20, 142
Asp700I	GAANNNNTTC	1 cut(s)	172
AspS9I	GGNCC	2 cut(s)	13, 215
AsuC2I	CCSGG	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	215
BbvI	GCAGC	2 cut(s)	7, 129
BccI	CCATC	1 cut(s)	130
BcnI	CCSGG	1 cut(s)	70
BfmI	CTRYAG	1 cut(s)	21
BisI	GCNGC	2 cut(s)	21, 143
BlsI	GCNGC	2 cut(s)	22, 144
Bme1390I	CCNGG	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	2 cut(s)	13, 215
BmiI	GGNNCC	2 cut(s)	14, 74
BmrFI	CCNGG	1 cut(s)	70
BmsI	GCATC	1 cut(s)	16
BpuMI	CCSGG	1 cut(s)	70
BsaJI	CCNNGG	1 cut(s)	49
BsaWI	WCCGGW	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 111
Bse118I	RCCGGY	1 cut(s)	44
Bse3DI	GCAATG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	49
BseLI	CCNNNNNNNGG	2 cut(s)	51, 111
BseMI	GCAATG	1 cut(s)	93
BseXI	GCAGC	2 cut(s)	7, 129
Bsh1285I	CGRYCG	1 cut(s)	89
BshFI	GGCC	2 cut(s)	15, 48
BsiEI	CGRYCG	1 cut(s)	89
BsiSI	CCGG	4 cut(s)	45, 69, 105, 242
BslI	CCNNNNNNNGG	2 cut(s)	51, 111
BsnI	GGCC	2 cut(s)	15, 48
Bsp143I	GATC	2 cut(s)	7, 270
BspACI	CCGC	2 cut(s)	85, 227
BspANI	GGCC	2 cut(s)	15, 48
BspLI	GGNNCC	2 cut(s)	14, 74
BspMAI	CTGCAG	1 cut(s)	25
BspPI	GGATC	2 cut(s)	15, 278
BsrDI	GCAATG	1 cut(s)	93
BsrFI	RCCGGY	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	2 cut(s)	7, 270
BssT1I	CCWWGG	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	46, 283
BstKTI	GATC	2 cut(s)	10, 273
BstMBI	GATC	2 cut(s)	7, 270
BstMCI	CGRYCG	1 cut(s)	89
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	68
BstSFI	CTRYAG	1 cut(s)	21
BstV1I	GCAGC	2 cut(s)	7, 129
BsuRI	GGCC	2 cut(s)	15, 48
Cac8I	GCNNGC	2 cut(s)	46, 283
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	2 cut(s)	13, 215
CviAII	CATG	1 cut(s)	306
CviJI	RGCY	6 cut(s)	15, 48, 122, 241, 281, 345
CviKI_1	RGCY	6 cut(s)	15, 48, 122, 241, 281, 345
DpnI	GATC	2 cut(s)	9, 272
DpnII	GATC	2 cut(s)	7, 270
EaeI	YGGCCR	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	49
EcoT22I	ATGCAT	1 cut(s)	311
ErhI	CCWWGG	1 cut(s)	49
FaeI	CATG	1 cut(s)	309
FaiI	YATR	2 cut(s)	307, 319
FatI	CATG	1 cut(s)	305
FblI	GTMKAC	1 cut(s)	89
Fnu4HI	GCNGC	2 cut(s)	21, 143
Fsp4HI	GCNGC	2 cut(s)	21, 143
GluI	GCNGC	2 cut(s)	21, 143
HaeIII	GGCC	2 cut(s)	15, 48
HapII	CCGG	4 cut(s)	45, 69, 105, 242
Hin1II	CATG	1 cut(s)	309
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HinfI	GANTC	3 cut(s)	173, 245, 250
HpaII	CCGG	4 cut(s)	45, 69, 105, 242
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	1 cut(s)	215
Hpy8I	GTNNAC	1 cut(s)	90
Hpy99I	CGWCG	1 cut(s)	258
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4IV	ACGT	2 cut(s)	58, 321
HpyCH4V	TGCA	5 cut(s)	23, 29, 206, 285, 309
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpySE526I	ACGT	2 cut(s)	58, 321
Hsp92II	CATG	1 cut(s)	309
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	7, 270
LpnPI	CCDG	4 cut(s)	58, 82, 118, 255
Lsp1109I	GCAGC	2 cut(s)	7, 129
LweI	GCATC	1 cut(s)	16
MaeII	ACGT	2 cut(s)	58, 321
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	2 cut(s)	9, 272
MboI	GATC	2 cut(s)	7, 270
MluCI	AATT	1 cut(s)	293
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	1 cut(s)	140
Mph1103I	ATGCAT	1 cut(s)	311
MroNI	GCCGGC	1 cut(s)	44
MroXI	GAANNNNTTC	1 cut(s)	172
MseI	TTAA	1 cut(s)	78
MspI	CCGG	4 cut(s)	45, 69, 105, 242
MspR9I	CCNGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	1 cut(s)	26
NaeI	GCCGGC	1 cut(s)	46
NciI	CCSGG	1 cut(s)	70
NdeII	GATC	2 cut(s)	7, 270
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	1 cut(s)	309
NlaIV	GGNNCC	2 cut(s)	14, 74
NsiI	ATGCAT	1 cut(s)	311
PcsI	WCGNNNNNNNCGW	1 cut(s)	95
PdiI	GCCGGC	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	172
PfeI	GAWTC	2 cut(s)	173, 250
PkrI	GCNGC	2 cut(s)	22, 144
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PspN4I	GGNNCC	2 cut(s)	14, 74
PspPI	GGNCC	2 cut(s)	13, 215
PstI	CTGCAG	1 cut(s)	25
SalI	GTCGAC	1 cut(s)	88
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	2 cut(s)	21, 143
Sau3AI	GATC	2 cut(s)	7, 270
Sau96I	GGNCC	2 cut(s)	13, 215
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	1 cut(s)	70
SetI	ASST	6 cut(s)	61, 151, 204, 220, 324, 347
SfaNI	GCATC	1 cut(s)	16
SfcI	CTRYAG	1 cut(s)	21
SinI	GGWCC	1 cut(s)	215
Sse9I	AATT	1 cut(s)	293
SsiI	CCGC	2 cut(s)	85, 227
StyD4I	CCNGG	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	49
TaaI	ACNGT	1 cut(s)	185
TaiI	ACGT	2 cut(s)	61, 324
TaqI	TCGA	3 cut(s)	89, 248, 253
TasI	AATT	1 cut(s)	293
TfiI	GAWTC	2 cut(s)	173, 250
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TseI	GCWGC	2 cut(s)	20, 142
TspGWI	ACGGA	2 cut(s)	185, 271
VpaK11BI	GGWCC	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	89
XmnI	GAANNNNTTC	1 cut(s)	172
Zsp2I	ATGCAT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.