Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8469801.1

Orthogroup ID

OG0000741

Physical Location & Seq

Genomic Coordinates Reverse (-)

26 .. 1214

Gene Structure 1189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8469801.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atgtcctcatcaaaacagaattcttacgaaaagttcacagatgctcctccggcgacgggtattccggtgagctccagcaacccctactttagtggagctcatgatcaccaccattatcaaaataactcccacatgccggatgcttctccatatcatctgaatgttagaacccccgagccttggaaatctggcctccttgactgcttctcggatcctaaaagctgttgcataacattttggtttccatgcatcacctttggccagattgctgagattgtggataaaggctctatatcttgtggggcaagtggagcactgtacaccttgatagcttttgtgactggttgttcttgcatctattcatgcttctaccgctccaaactgaggcagcaattcactttggaagagagtccttgtggtgattgtttggttcactgcttctgcgaaccctgcgccttgtgccaggagtaccgtgagctccaaagtcgcggttttaatatggccatcggatgggatggaaatgtggatgcaaggaaccacgaagtggcaatggccccggtgcccccaatggtggaggaaggcatgagtcgtgataaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

199

Amino Acids

22.09

Weight (kDa)

5.54

Isoelectric Point (pI)

56.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14870 AT1G14870 AT1G14880 AT5G35525
fragaria_vesca	FvH4_4g33890 FvH4_4g33900 FvH4_4g33900 FvH4_4g33930 FvH4_4g34200
malus_domestica	MD16G1021300.v1.1 MD16G1021400.v1.1
prunus_persica	Prupe.1G331100_v2.0.a1
pyrus_communis	pycom13g01870 pycom16g01900 pycom16g01910
rosa_chinensis	RchiOBHm_Chr0c23g0500741 RchiOBHm_Chr4g0409091 RchiOBHm_Chr4g0443411 RchiOBHm_Chr4g0443421 RchiOBHm_Chr4g0443431 RchiOBHm_Chr4g0443441 RchiOBHm_Chr4g0443451 RchiOBHm_Chr4g0443461 RchiOBHm_Chr5g0070111
rosa_laevigata	RLG00000005927 RLG00000005928 RLG00000005929 RLG00000005930 RLG00000019779
rosa_multiflora	Rmu_co8363857.1_g000001 Rmu_co8469801.1_g000001 Rmu_sc0001669.1_g000019 Rmu_sc0004836.1_g000022 Rmu_sc0004849.1_g000015 Rmu_sc0009670.1_g000002 Rmu_ssc0000122.1_g000016 Rmu_ssc0000122.1_g000017
rosa_roxburghii	Rroxscaffold_3G00257420 Rroxscaffold_5G00383970 Rroxscaffold_5G00383980 Rroxscaffold_5G00384010
rosa_rugosa	Rorug04G0346000 Rorug04G0346100 Rorug04G0346200 Rorug04G0346400 Rorug05G0555800
rosa_samantha	Rh4AG154100 Rh4AG401500 Rh4AG401600 Rh4AG401700 Rh4AG401800 Rh4AG401900 Rh4BG412900 Rh4BG413100 Rh4BG413200 Rh4BG413300 Rh4CG162800 Rh4CG428600 Rh4CG428700 Rh4CG428800 Rh4CG428900 Rh4CG429000 Rh4DG408700 Rh4DG408800 Rh4DG408900 Rh4DG409000
rosa_wichuraiana	Rw4G004920 Rw4G034620 Rw4G034630 Rw4G034640 Rw4G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	559
AccB7I	CCANNNNNTGG	2 cut(s)	510, 544
AccBSI	CCGCTC	1 cut(s)	375
AccII	CGCG	1 cut(s)	489
AciI	CCGC	2 cut(s)	373, 489
AclWI	GGATC	2 cut(s)	206, 219
AcoI	YGGCCR	2 cut(s)	259, 501
AcsI	RAATTY	1 cut(s)	19
AdeI	CACNNNGTG	1 cut(s)	544
AfaI	GTAC	2 cut(s)	320, 470
AfiI	CCNNNNNNNGG	7 cut(s)	56, 136, 180, 384, 510, 544, 571
AjnI	CCWGG	1 cut(s)	462
AluBI	AGCT	5 cut(s)	72, 98, 222, 332, 478
AluI	AGCT	5 cut(s)	72, 98, 222, 332, 478
Alw21I	GWGCWC	4 cut(s)	74, 100, 316, 480
AlwI	GGATC	2 cut(s)	206, 219
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	4 cut(s)	190, 259, 501, 552
ApeKI	GCWGC	1 cut(s)	388
ApoI	RAATTY	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	455
AspS9I	GGNCC	1 cut(s)	553
AsuC2I	CCSGG	1 cut(s)	557
AsuHPI	GGTGA	4 cut(s)	79, 98, 244, 431
AvaI	CYCGRG	1 cut(s)	173
BaeGI	GKGCMC	1 cut(s)	564
BalI	TGGCCA	2 cut(s)	261, 503
BamHI	GGATCC	1 cut(s)	211
BanI	GGYRCC	1 cut(s)	559
BanII	GRGCYC	3 cut(s)	74, 100, 480
Bbv12I	GWGCWC	4 cut(s)	74, 100, 316, 480
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	3 cut(s)	504, 509, 512
BciT130I	CCWGG	1 cut(s)	464
BclI	TGATCA	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	557
BisI	GCNGC	1 cut(s)	389
BlsI	GCNGC	1 cut(s)	390
Bme1390I	CCNGG	2 cut(s)	464, 557
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	553
BmiI	GGNNCC	4 cut(s)	213, 536, 555, 561
BmrFI	CCNGG	2 cut(s)	464, 557
BmsI	GCATC	5 cut(s)	31, 130, 258, 363, 517
BpmI	CTGGAG	1 cut(s)	58
BpuMI	CCSGG	1 cut(s)	557
BsaJI	CCNNGG	2 cut(s)	179, 555
BsaWI	WCCGGW	1 cut(s)	64
BsaXI	ACNNNNNCTCC	2 cut(s)	28, 58
Bsc4I	CCNNNNNNNGG	7 cut(s)	56, 136, 180, 384, 510, 544, 571
Bse1I	ACTGG	1 cut(s)	346
Bse3DI	GCAATG	1 cut(s)	555
BseBI	CCWGG	1 cut(s)	464
BseDI	CCNNGG	2 cut(s)	179, 555
BseGI	GGATG	4 cut(s)	145, 515, 520, 532
BseLI	CCNNNNNNNGG	7 cut(s)	56, 136, 180, 384, 510, 544, 571
BseMI	GCAATG	1 cut(s)	555
BseMII	CTCAG	2 cut(s)	261, 374
BseNI	ACTGG	1 cut(s)	346
BseRI	GAGGAG	1 cut(s)	36
BseSI	GKGCMC	1 cut(s)	564
BseXI	GCAGC	1 cut(s)	400
Bsh1236I	CGCG	1 cut(s)	489
BshFI	GGCC	4 cut(s)	192, 261, 503, 554
BshNI	GGYRCC	1 cut(s)	559
BsiHKAI	GWGCWC	4 cut(s)	74, 100, 316, 480
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	4 cut(s)	50, 65, 137, 557
BslI	CCNNNNNNNGG	7 cut(s)	56, 136, 180, 384, 510, 544, 571
BsnI	GGCC	4 cut(s)	192, 261, 503, 554
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	5 cut(s)	74, 100, 316, 480, 564
Bsp1407I	TGTACA	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	103, 211
BspACI	CCGC	2 cut(s)	373, 489
BspANI	GGCC	4 cut(s)	192, 261, 503, 554
BspCNI	CTCAG	2 cut(s)	262, 375
BspFNI	CGCG	1 cut(s)	489
BspHI	TCATGA	1 cut(s)	100
BspLI	GGNNCC	4 cut(s)	213, 536, 555, 561
BspPI	GGATC	2 cut(s)	206, 219
BspT107I	GGYRCC	1 cut(s)	559
BsrBI	CCGCTC	1 cut(s)	375
BsrDI	GCAATG	1 cut(s)	555
BsrGI	TGTACA	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	346
BssECI	CCNNGG	2 cut(s)	179, 555
BssMI	GATC	2 cut(s)	103, 211
BssT1I	CCWWGG	1 cut(s)	179
Bst2UI	CCWGG	1 cut(s)	464
Bst4CI	ACNGT	2 cut(s)	318, 473
Bst6I	CTCTTC	1 cut(s)	399
BstAUI	TGTACA	1 cut(s)	318
BstDEI	CTNAG	2 cut(s)	270, 383
BstF5I	GGATG	4 cut(s)	145, 515, 520, 532
BstFNI	CGCG	1 cut(s)	489
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	2 cut(s)	106, 214
BstMBI	GATC	2 cut(s)	103, 211
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 311, 372, 450, 459
BstNI	CCWGG	1 cut(s)	464
BstNSI	RCATGY	1 cut(s)	136
BstSCI	CCNGG	2 cut(s)	462, 555
BstSLI	GKGCMC	1 cut(s)	564
BstUI	CGCG	1 cut(s)	489
BstV1I	GCAGC	1 cut(s)	400
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BsuRI	GGCC	4 cut(s)	192, 261, 503, 554
BtsCI	GGATG	4 cut(s)	145, 515, 520, 532
BtsI	GCAGTG	1 cut(s)	433
BtsIMutI	CAGTG	2 cut(s)	314, 433
CciI	TCATGA	1 cut(s)	100
CfoI	GCGC	1 cut(s)	455
Cfr13I	GGNCC	1 cut(s)	553
Csp6I	GTAC	2 cut(s)	319, 469
CviAII	CATG	5 cut(s)	101, 133, 246, 363, 583
CviQI	GTAC	2 cut(s)	319, 469
DdeI	CTNAG	2 cut(s)	270, 383
DpnI	GATC	2 cut(s)	105, 213
DpnII	GATC	2 cut(s)	103, 211
DraIII	CACNNNGTG	1 cut(s)	544
EaeI	YGGCCR	2 cut(s)	259, 501
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Ecl136II	GAGCTC	3 cut(s)	72, 98, 478
Eco130I	CCWWGG	1 cut(s)	179
Eco24I	GRGCYC	3 cut(s)	74, 100, 480
Eco53kI	GAGCTC	3 cut(s)	72, 98, 478
Eco88I	CYCGRG	1 cut(s)	173
EcoICRI	GAGCTC	3 cut(s)	72, 98, 478
EcoRI	GAATTC	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	462
EcoT14I	CCWWGG	1 cut(s)	179
EcoT22I	ATGCAT	1 cut(s)	251
EcoT38I	GRGCYC	3 cut(s)	74, 100, 480
ErhI	CCWWGG	1 cut(s)	179
FaeI	CATG	5 cut(s)	104, 136, 249, 366, 586
FaiI	YATR	9 cut(s)	102, 134, 151, 230, 247, 293, 364, 500, 584
FatI	CATG	5 cut(s)	100, 132, 245, 362, 582
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	389
FokI	GGATG	4 cut(s)	152, 522, 527, 539
FriOI	GRGCYC	3 cut(s)	74, 100, 480
Fsp4HI	GCNGC	1 cut(s)	389
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	1 cut(s)	389
GsuI	CTGGAG	1 cut(s)	58
HaeIII	GGCC	4 cut(s)	192, 261, 503, 554
HapII	CCGG	4 cut(s)	50, 65, 137, 557
HhaI	GCGC	1 cut(s)	455
Hin1II	CATG	5 cut(s)	104, 136, 249, 366, 586
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HinfI	GANTC	2 cut(s)	409, 586
HpaII	CCGG	4 cut(s)	50, 65, 137, 557
HphI	GGTGA	4 cut(s)	79, 98, 244, 431
Hpy166II	GTNNAC	3 cut(s)	36, 321, 433
Hpy188I	TCNGA	3 cut(s)	159, 211, 509
Hpy188III	TCNNGA	2 cut(s)	101, 590
Hpy8I	GTNNAC	3 cut(s)	36, 321, 433
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	1 cut(s)	572
HpyCH4III	ACNGT	2 cut(s)	318, 473
HpyCH4V	TGCA	4 cut(s)	228, 249, 354, 530
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 311, 372, 450, 459
HpyF3I	CTNAG	2 cut(s)	270, 383
Hsp92II	CATG	5 cut(s)	104, 136, 249, 366, 586
HspAI	GCGC	1 cut(s)	453
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	103, 211
LmnI	GCTCC	6 cut(s)	49, 77, 95, 311, 380, 483
Lsp1109I	GCAGC	1 cut(s)	400
LweI	GCATC	5 cut(s)	31, 130, 258, 363, 517
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	2 cut(s)	105, 213
MbiI	CCGCTC	1 cut(s)	375
MboI	GATC	2 cut(s)	103, 211
MboII	GAAGA	1 cut(s)	416
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	5 cut(s)	74, 100, 316, 480, 564
MlsI	TGGCCA	2 cut(s)	261, 503
MluCI	AATT	2 cut(s)	19, 392
MluNI	TGGCCA	2 cut(s)	261, 503
MlyI	GAGTC	2 cut(s)	418, 595
MnlI	CCTC	5 cut(s)	16, 57, 203, 378, 568
Mox20I	TGGCCA	2 cut(s)	261, 503
Mph1103I	ATGCAT	1 cut(s)	251
MscI	TGGCCA	2 cut(s)	261, 503
MseI	TTAA	1 cut(s)	495
MslI	CAYNNNNRTG	1 cut(s)	159
Msp20I	TGGCCA	2 cut(s)	261, 503
MspI	CCGG	4 cut(s)	50, 65, 137, 557
MspR9I	CCNGG	2 cut(s)	464, 557
MvaI	CCWGG	1 cut(s)	464
MvnI	CGCG	1 cut(s)	489
MwoI	GCNNNNNNNGC	5 cut(s)	50, 311, 372, 450, 459
NciI	CCSGG	1 cut(s)	557
NdeII	GATC	2 cut(s)	103, 211
NlaIII	CATG	5 cut(s)	104, 136, 249, 366, 586
NlaIV	GGNNCC	4 cut(s)	213, 536, 555, 561
NmuCI	GTSAC	1 cut(s)	337
NsiI	ATGCAT	1 cut(s)	251
NspI	RCATGY	1 cut(s)	136
PagI	TCATGA	1 cut(s)	100
PflMI	CCANNNNNTGG	2 cut(s)	510, 544
PkrI	GCNGC	1 cut(s)	390
PleI	GAGTC	2 cut(s)	417, 594
PpsI	GAGTC	2 cut(s)	417, 594
Psp124BI	GAGCTC	3 cut(s)	74, 100, 480
Psp6I	CCWGG	1 cut(s)	462
PspGI	CCWGG	1 cut(s)	462
PspN4I	GGNNCC	4 cut(s)	213, 536, 555, 561
PspPI	GGNCC	1 cut(s)	553
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	2 cut(s)	320, 470
RsaNI	GTAC	2 cut(s)	319, 469
RseI	CAYNNNNRTG	1 cut(s)	159
SacI	GAGCTC	3 cut(s)	74, 100, 480
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	1 cut(s)	389
Sau3AI	GATC	2 cut(s)	103, 211
Sau96I	GGNCC	1 cut(s)	553
SchI	GAGTC	2 cut(s)	418, 595
ScrFI	CCNGG	2 cut(s)	464, 557
SduI	GDGCHC	5 cut(s)	74, 100, 316, 480, 564
SetI	ASST	7 cut(s)	74, 100, 224, 257, 326, 334, 480
SfaNI	GCATC	5 cut(s)	31, 130, 258, 363, 517
SmiMI	CAYNNNNRTG	1 cut(s)	159
Sse9I	AATT	2 cut(s)	19, 392
SsiI	CCGC	2 cut(s)	373, 489
SstI	GAGCTC	3 cut(s)	74, 100, 480
StyD4I	CCNGG	2 cut(s)	462, 555
StyI	CCWWGG	1 cut(s)	179
TaaI	ACNGT	2 cut(s)	318, 473
TasI	AATT	2 cut(s)	19, 392
TatI	WGTACW	1 cut(s)	318
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	2 cut(s)	321, 440
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	1 cut(s)	388
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	1 cut(s)	351
TspRI	CASTG	2 cut(s)	321, 440
Van91I	CCANNNNNTGG	2 cut(s)	510, 544
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	136
Zsp2I	ATGCAT	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.