Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000741

Physical Location & Seq

Genomic Coordinates Forward (+)

31382575 .. 31384459

Gene Structure 1885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G331100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTACTCATCATCAAACCCAAATGGTTACAACAAGTACGCATCAGAGCAGCTGCATCATCAGGGTGGGCCGCCCACGGGGATCCCAGTGAGCTCGAGCACAGAGCCCTATTTTAGCACCAGTCATGATCAAGACACCGACACTGACACCCACAGCCACCACCCTTACAGCCACGGCCAAGTCCCTCCTCATCTCCGCCCTAGAGCTCCCGTGCCTTGGTCCTCTGGCCTCTGTGACTGCTTCTCCGATCCCAAAAACTGTTGCATAACATGTTGGTGTCCATGCATCACTTTTGGCCAAATTGCAGAGATTGTGGACAAGGGTTCTACGTCATGTGGTGCAAGTGGAGCGCTGTACACGCTGATAACGTGCGTGACAGGTTGCCCTTGCTTCTACTCATGCTTCTATCGATCCAAAATGAGACAGCAATACGCCTTGGTGGAGAGCCCTTGTAACGACTGCTTGCTTCACTGCTTCTGCGAGTGCTGCGCCCTCTGCCAAGAGTATCGCCACCTCCAATCTCGCGGTTTCGACATGGCCATCGGGTGGCATGGAAATATCGAGGAAAGGAACCGGGAAGTGGCAATGACCCCTGTGCCTCCTGTGGTGGAGCAAGGCATGAGTCGCGATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

212

Amino Acids

23.43

Weight (kDa)

5.95

Isoelectric Point (pI)

62.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14870 AT1G14870 AT1G14880 AT5G35525
fragaria_vesca	FvH4_4g33890 FvH4_4g33900 FvH4_4g33900 FvH4_4g33930 FvH4_4g34200
malus_domestica	MD16G1021300.v1.1 MD16G1021400.v1.1
prunus_persica	Prupe.1G331100_v2.0.a1
pyrus_communis	pycom13g01870 pycom16g01900 pycom16g01910
rosa_chinensis	RchiOBHm_Chr0c23g0500741 RchiOBHm_Chr4g0409091 RchiOBHm_Chr4g0443411 RchiOBHm_Chr4g0443421 RchiOBHm_Chr4g0443431 RchiOBHm_Chr4g0443441 RchiOBHm_Chr4g0443451 RchiOBHm_Chr4g0443461 RchiOBHm_Chr5g0070111
rosa_laevigata	RLG00000005927 RLG00000005928 RLG00000005929 RLG00000005930 RLG00000019779
rosa_multiflora	Rmu_co8363857.1_g000001 Rmu_co8469801.1_g000001 Rmu_sc0001669.1_g000019 Rmu_sc0004836.1_g000022 Rmu_sc0004849.1_g000015 Rmu_sc0009670.1_g000002 Rmu_ssc0000122.1_g000016 Rmu_ssc0000122.1_g000017
rosa_roxburghii	Rroxscaffold_3G00257420 Rroxscaffold_5G00383970 Rroxscaffold_5G00383980 Rroxscaffold_5G00384010
rosa_rugosa	Rorug04G0346000 Rorug04G0346100 Rorug04G0346200 Rorug04G0346400 Rorug05G0555800
rosa_samantha	Rh4AG154100 Rh4AG401500 Rh4AG401600 Rh4AG401700 Rh4AG401800 Rh4AG401900 Rh4BG412900 Rh4BG413100 Rh4BG413200 Rh4BG413300 Rh4CG162800 Rh4CG428600 Rh4CG428700 Rh4CG428800 Rh4CG428900 Rh4CG429000 Rh4DG408700 Rh4DG408800 Rh4DG408900 Rh4DG409000
rosa_wichuraiana	Rw4G004920 Rw4G034620 Rw4G034630 Rw4G034640 Rw4G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	546
AccII	CGCG	2 cut(s)	525, 627
AciI	CCGC	3 cut(s)	71, 196, 525
AclWI	GGATC	4 cut(s)	76, 89, 242, 405
AcoI	YGGCCR	3 cut(s)	175, 295, 537
AfaI	GTAC	3 cut(s)	5, 38, 356
AfeI	AGCGCT	1 cut(s)	351
AfiI	CCNNNNNNNGG	4 cut(s)	77, 216, 546, 580
AflIII	ACRYGT	1 cut(s)	269
AluBI	AGCT	3 cut(s)	52, 93, 206
AluI	AGCT	3 cut(s)	52, 93, 206
Alw21I	GWGCWC	3 cut(s)	95, 101, 208
Alw26I	GTCTC	1 cut(s)	415
AlwI	GGATC	4 cut(s)	76, 89, 242, 405
Ama87I	CYCGRG	1 cut(s)	94
Aor51HI	AGCGCT	1 cut(s)	351
AoxI	GGCC	5 cut(s)	68, 175, 226, 295, 537
ApeKI	GCWGC	3 cut(s)	49, 52, 486
AspLEI	GCGC	2 cut(s)	352, 491
AspS9I	GGNCC	2 cut(s)	68, 219
AsuC2I	CCSGG	1 cut(s)	575
AvaI	CYCGRG	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	219
BalI	TGGCCA	2 cut(s)	297, 539
BamHI	GGATCC	1 cut(s)	81
BanII	GRGCYC	4 cut(s)	95, 108, 208, 449
Bbv12I	GWGCWC	3 cut(s)	95, 101, 208
BbvI	GCAGC	3 cut(s)	39, 61, 473
BccI	CCATC	1 cut(s)	548
BceAI	ACGGC	1 cut(s)	190
BclI	TGATCA	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	575
BcoDI	GTCTC	1 cut(s)	415
BfaI	CTAG	1 cut(s)	201
BfoI	RGCGCY	1 cut(s)	353
BisI	GCNGC	4 cut(s)	50, 53, 71, 487
BlsI	GCNGC	4 cut(s)	51, 54, 72, 488
Bme1390I	CCNGG	1 cut(s)	575
Bme18I	GGWCC	1 cut(s)	219
BmeT110I	CYCGRG	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	68, 219
BmiI	GGNNCC	2 cut(s)	83, 572
BmrFI	CCNGG	1 cut(s)	575
BmrI	ACTGGG	1 cut(s)	80
BmsI	GCATC	3 cut(s)	50, 64, 294
BmuI	ACTGGG	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	575
Bsa29I	ATCGAT	1 cut(s)	409
BsaJI	CCNNGG	4 cut(s)	75, 172, 215, 435
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bsc4I	CCNNNNNNNGG	4 cut(s)	77, 216, 546, 580
Bse1I	ACTGG	2 cut(s)	86, 120
Bse3DI	GCAATG	1 cut(s)	591
BseCI	ATCGAT	1 cut(s)	409
BseDI	CCNNGG	4 cut(s)	75, 172, 215, 435
BseLI	CCNNNNNNNGG	4 cut(s)	77, 216, 546, 580
BseMI	GCAATG	1 cut(s)	591
BseNI	ACTGG	2 cut(s)	86, 120
BseRI	GAGGAG	1 cut(s)	177
BseXI	GCAGC	3 cut(s)	39, 61, 473
Bsh1236I	CGCG	2 cut(s)	525, 627
BshFI	GGCC	5 cut(s)	70, 177, 228, 297, 539
BshVI	ATCGAT	1 cut(s)	409
BsiHKAI	GWGCWC	3 cut(s)	95, 101, 208
BsiHKCI	CYCGRG	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	574
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	4 cut(s)	77, 216, 546, 580
BsmAI	GTCTC	1 cut(s)	415
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	5 cut(s)	70, 177, 228, 297, 539
BsoBI	CYCGRG	1 cut(s)	94
Bsp1286I	GDGCHC	5 cut(s)	95, 101, 108, 208, 449
Bsp1407I	TGTACA	1 cut(s)	354
Bsp143I	GATC	4 cut(s)	81, 127, 247, 410
Bsp68I	TCGCGA	1 cut(s)	627
BspACI	CCGC	3 cut(s)	71, 196, 525
BspANI	GGCC	5 cut(s)	70, 177, 228, 297, 539
BspDI	ATCGAT	1 cut(s)	409
BspFNI	CGCG	2 cut(s)	525, 627
BspHI	TCATGA	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	83, 572
BspPI	GGATC	4 cut(s)	76, 89, 242, 405
BsrDI	GCAATG	1 cut(s)	591
BsrGI	TGTACA	1 cut(s)	354
BsrI	ACTGG	2 cut(s)	86, 120
BssECI	CCNNGG	4 cut(s)	75, 172, 215, 435
BssMI	GATC	4 cut(s)	81, 127, 247, 410
BssT1I	CCWWGG	2 cut(s)	215, 435
Bst4CI	ACNGT	1 cut(s)	260
BstAUI	TGTACA	1 cut(s)	354
BstC8I	GCNNGC	1 cut(s)	464
BstDSI	CCRYGG	2 cut(s)	75, 172
BstFNI	CGCG	2 cut(s)	525, 627
BstH2I	RGCGCY	1 cut(s)	353
BstHHI	GCGC	2 cut(s)	352, 491
BstKTI	GATC	4 cut(s)	84, 130, 250, 413
BstMAI	GTCTC	1 cut(s)	415
BstMBI	GATC	4 cut(s)	81, 127, 247, 410
BstMWI	GCNNNNNNNGC	5 cut(s)	347, 358, 486, 495, 624
BstNSI	RCATGY	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	573
BstUI	CGCG	2 cut(s)	525, 627
BstV1I	GCAGC	3 cut(s)	39, 61, 473
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
Bsu15I	ATCGAT	1 cut(s)	409
BsuRI	GGCC	5 cut(s)	70, 177, 228, 297, 539
BsuTUI	ATCGAT	1 cut(s)	409
BtgI	CCRYGG	2 cut(s)	75, 172
BtsI	GCAGTG	1 cut(s)	469
BtsIMutI	CAGTG	3 cut(s)	93, 141, 469
BtuMI	TCGCGA	1 cut(s)	627
Cac8I	GCNNGC	1 cut(s)	464
CciI	TCATGA	1 cut(s)	124
CfoI	GCGC	2 cut(s)	352, 491
Cfr13I	GGNCC	2 cut(s)	68, 219
ClaI	ATCGAT	1 cut(s)	409
Csp6I	GTAC	3 cut(s)	4, 37, 355
CviAII	CATG	8 cut(s)	125, 270, 282, 333, 399, 535, 551, 619
CviQI	GTAC	3 cut(s)	4, 37, 355
DpnI	GATC	4 cut(s)	83, 129, 249, 412
DpnII	GATC	4 cut(s)	81, 127, 247, 410
EaeI	YGGCCR	3 cut(s)	175, 295, 537
EciI	GGCGGA	1 cut(s)	185
Ecl136II	GAGCTC	2 cut(s)	93, 206
Eco130I	CCWWGG	2 cut(s)	215, 435
Eco24I	GRGCYC	4 cut(s)	95, 108, 208, 449
Eco47I	GGWCC	1 cut(s)	219
Eco47III	AGCGCT	1 cut(s)	351
Eco53kI	GAGCTC	2 cut(s)	93, 206
Eco88I	CYCGRG	1 cut(s)	94
EcoICRI	GAGCTC	2 cut(s)	93, 206
EcoT14I	CCWWGG	2 cut(s)	215, 435
EcoT22I	ATGCAT	1 cut(s)	287
EcoT38I	GRGCYC	4 cut(s)	95, 108, 208, 449
ErhI	CCWWGG	2 cut(s)	215, 435
FaeI	CATG	8 cut(s)	128, 273, 285, 336, 402, 538, 554, 622
FaiI	YATR	9 cut(s)	126, 266, 271, 283, 334, 400, 536, 552, 620
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	8 cut(s)	124, 269, 281, 332, 398, 534, 550, 618
FbaI	TGATCA	1 cut(s)	127
Fnu4HI	GCNGC	4 cut(s)	50, 53, 71, 487
FriOI	GRGCYC	4 cut(s)	95, 108, 208, 449
Fsp4HI	GCNGC	4 cut(s)	50, 53, 71, 487
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	2 cut(s)	351, 490
GluI	GCNGC	4 cut(s)	50, 53, 71, 487
HaeII	RGCGCY	1 cut(s)	353
HaeIII	GGCC	5 cut(s)	70, 177, 228, 297, 539
HapII	CCGG	1 cut(s)	574
HhaI	GCGC	2 cut(s)	352, 491
Hin1II	CATG	8 cut(s)	128, 273, 285, 336, 402, 538, 554, 622
Hin6I	GCGC	2 cut(s)	350, 489
HinP1I	GCGC	2 cut(s)	350, 489
HinfI	GANTC	1 cut(s)	622
HpaII	CCGG	1 cut(s)	574
Hpy166II	GTNNAC	2 cut(s)	316, 357
Hpy188I	TCNGA	2 cut(s)	46, 247
Hpy188III	TCNNGA	3 cut(s)	125, 131, 626
Hpy8I	GTNNAC	2 cut(s)	316, 357
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4IV	ACGT	2 cut(s)	329, 368
HpyCH4V	TGCA	5 cut(s)	55, 264, 285, 305, 341
HpyF10VI	GCNNNNNNNGC	5 cut(s)	347, 358, 486, 495, 624
HpySE526I	ACGT	2 cut(s)	329, 368
Hsp92II	CATG	8 cut(s)	128, 273, 285, 336, 402, 538, 554, 622
HspAI	GCGC	2 cut(s)	350, 489
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	4 cut(s)	81, 127, 247, 410
LmnI	GCTCC	3 cut(s)	211, 347, 610
LpnPI	CCDG	8 cut(s)	47, 99, 133, 210, 363, 587, 606, 615
Lsp1109I	GCAGC	3 cut(s)	39, 61, 473
LweI	GCATC	3 cut(s)	50, 64, 294
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	2 cut(s)	329, 368
MaeIII	GTNAC	4 cut(s)	26, 233, 373, 452
MalI	GATC	4 cut(s)	83, 129, 249, 412
MboI	GATC	4 cut(s)	81, 127, 247, 410
MflI	RGATCY	1 cut(s)	81
MhlI	GDGCHC	5 cut(s)	95, 101, 108, 208, 449
MlsI	TGGCCA	2 cut(s)	297, 539
MluCI	AATT	1 cut(s)	300
MluNI	TGGCCA	2 cut(s)	297, 539
MlyI	GAGTC	1 cut(s)	631
MnlI	CCTC	8 cut(s)	195, 198, 232, 239, 503, 524, 556, 609
Mox20I	TGGCCA	2 cut(s)	297, 539
Mph1103I	ATGCAT	1 cut(s)	287
MscI	TGGCCA	2 cut(s)	297, 539
MslI	CAYNNNNRTG	2 cut(s)	63, 274
Msp20I	TGGCCA	2 cut(s)	297, 539
MspA1I	CMGCKG	1 cut(s)	52
MspI	CCGG	1 cut(s)	574
MspR9I	CCNGG	1 cut(s)	575
MvnI	CGCG	2 cut(s)	525, 627
MwoI	GCNNNNNNNGC	5 cut(s)	347, 358, 486, 495, 624
NciI	CCSGG	1 cut(s)	575
NdeII	GATC	4 cut(s)	81, 127, 247, 410
NlaIII	CATG	8 cut(s)	128, 273, 285, 336, 402, 538, 554, 622
NlaIV	GGNNCC	2 cut(s)	83, 572
NmuCI	GTSAC	2 cut(s)	233, 373
NruI	TCGCGA	1 cut(s)	627
NsiI	ATGCAT	1 cut(s)	287
NspI	RCATGY	1 cut(s)	273
PaeR7I	CTCGAG	1 cut(s)	94
PagI	TCATGA	1 cut(s)	124
PciI	ACATGT	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	1 cut(s)	365
PflMI	CCANNNNNTGG	1 cut(s)	546
PkrI	GCNGC	4 cut(s)	51, 54, 72, 488
PleI	GAGTC	1 cut(s)	630
PpsI	GAGTC	1 cut(s)	630
PscI	ACATGT	1 cut(s)	269
Psp124BI	GAGCTC	2 cut(s)	95, 208
PspN4I	GGNNCC	2 cut(s)	83, 572
PspPI	GGNCC	2 cut(s)	68, 219
PspXI	VCTCGAGB	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	81
PvuII	CAGCTG	1 cut(s)	52
RruI	TCGCGA	1 cut(s)	627
RsaI	GTAC	3 cut(s)	5, 38, 356
RsaNI	GTAC	3 cut(s)	4, 37, 355
RseI	CAYNNNNRTG	2 cut(s)	63, 274
SacI	GAGCTC	2 cut(s)	95, 208
SatI	GCNGC	4 cut(s)	50, 53, 71, 487
Sau3AI	GATC	4 cut(s)	81, 127, 247, 410
Sau96I	GGNCC	2 cut(s)	68, 219
SchI	GAGTC	1 cut(s)	631
ScrFI	CCNGG	1 cut(s)	575
SduI	GDGCHC	5 cut(s)	95, 101, 108, 208, 449
SetI	ASST	7 cut(s)	54, 95, 208, 332, 371, 382, 516
SfaNI	GCATC	3 cut(s)	50, 64, 294
Sfr274I	CTCGAG	1 cut(s)	94
SinI	GGWCC	1 cut(s)	219
SlaI	CTCGAG	1 cut(s)	94
SmiMI	CAYNNNNRTG	2 cut(s)	63, 274
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	1 cut(s)	300
SsiI	CCGC	3 cut(s)	71, 196, 525
SspMI	CTAG	1 cut(s)	201
SstI	GAGCTC	2 cut(s)	95, 208
StyD4I	CCNGG	1 cut(s)	573
StyI	CCWWGG	2 cut(s)	215, 435
TaaI	ACNGT	1 cut(s)	260
TaiI	ACGT	2 cut(s)	332, 371
TaqI	TCGA	4 cut(s)	95, 409, 531, 561
TasI	AATT	1 cut(s)	300
TatI	WGTACW	2 cut(s)	3, 354
TauI	GCSGC	1 cut(s)	73
TscAI	CASTG	3 cut(s)	93, 148, 476
TseFI	GTSAC	2 cut(s)	233, 373
TseI	GCWGC	3 cut(s)	49, 52, 486
Tsp45I	GTSAC	2 cut(s)	233, 373
TspRI	CASTG	3 cut(s)	93, 148, 476
Van91I	CCANNNNNTGG	1 cut(s)	546
VpaK11BI	GGWCC	1 cut(s)	219
XceI	RCATGY	1 cut(s)	273
XhoI	CTCGAG	1 cut(s)	94
XspI	CTAG	1 cut(s)	201
Zsp2I	ATGCAT	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.