Rorug04G0346400

Protein PLANT CADMIUM RESISTANCE 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000741
Physical Location & Seq
Reverse (-)
51852089 .. 51852241
153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0346400.1

Sequence Viewer

Length: 153 bp
ATGGACATGCTCTCGCTGAGAATGCTGCTCGAAACACGGATCGAAGCCGCACTCATCGGCGATGGGTATCGTGCTGAGGATCTCATCCGGAAACGGTTCGAGGTCCGTGACGTTCTCTTTTACAGGCTGTTTCCGAGATTGAATTGCCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

50

Amino Acids

6.03

Weight (kDa)

7.94

Isoelectric Point (pI)

36.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 87
AciI CCGC 1 cut(s) 48
AclWI GGATC 2 cut(s) 47, 87
AgsI TTSAA 1 cut(s) 142
AlwI GGATC 2 cut(s) 47, 87
Aor13HI TCCGGA 1 cut(s) 87
ApeKI GCWGC 1 cut(s) 25
Asp700I GAANNNNTTC 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 103
AvaII GGWCC 1 cut(s) 103
BbvCI CCTCAGC 1 cut(s) 75
BbvI GCAGC 1 cut(s) 12
BccI CCATC 1 cut(s) 56
BisI GCNGC 2 cut(s) 26, 48
BlsI GCNGC 2 cut(s) 27, 49
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 103
Bpu10I CCTNAGC 1 cut(s) 75
BsaBI GATNNNNATC 1 cut(s) 66
BsaWI WCCGGW 1 cut(s) 87
Bse8I GATNNNNATC 1 cut(s) 66
BseAI TCCGGA 1 cut(s) 87
BseGI GGATG 1 cut(s) 84
BseJI GATNNNNATC 1 cut(s) 66
BseMII CTCAG 2 cut(s) 8, 66
BseXI GCAGC 1 cut(s) 12
BsiSI CCGG 1 cut(s) 88
BsmI GAATGC 1 cut(s) 27
Bsp13I TCCGGA 1 cut(s) 87
Bsp143I GATC 2 cut(s) 39, 79
BspACI CCGC 1 cut(s) 48
BspCNI CTCAG 2 cut(s) 9, 67
BspEI TCCGGA 1 cut(s) 87
BspPI GGATC 2 cut(s) 47, 87
BssMI GATC 2 cut(s) 39, 79
Bst4CI ACNGT 1 cut(s) 96
BstDEI CTNAG 2 cut(s) 17, 75
BstF5I GGATG 1 cut(s) 84
BstKTI GATC 2 cut(s) 42, 82
BstMBI GATC 2 cut(s) 39, 79
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstNSI RCATGY 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BtgZI GCGATG 1 cut(s) 75
BtsCI GGATG 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 103
CviAII CATG 1 cut(s) 7
CviJI RGCY 2 cut(s) 47, 127
CviKI_1 RGCY 2 cut(s) 47, 127
DdeI CTNAG 2 cut(s) 17, 75
DpnI GATC 2 cut(s) 41, 81
DpnII GATC 2 cut(s) 39, 79
Eco47I GGWCC 1 cut(s) 103
FaeI CATG 1 cut(s) 10
FaiI YATR 2 cut(s) 8, 151
FatI CATG 1 cut(s) 6
Fnu4HI GCNGC 2 cut(s) 26, 48
FokI GGATG 1 cut(s) 71
Fsp4HI GCNGC 2 cut(s) 26, 48
GluI GCNGC 2 cut(s) 26, 48
HapII CCGG 1 cut(s) 88
Hin1II CATG 1 cut(s) 10
HpaII CCGG 1 cut(s) 88
Hpy188I TCNGA 1 cut(s) 135
Hpy188III TCNNGA 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4IV ACGT 1 cut(s) 111
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
HpyF3I CTNAG 2 cut(s) 17, 75
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 1 cut(s) 10
Kpn2I TCCGGA 1 cut(s) 87
Kzo9I GATC 2 cut(s) 39, 79
LpnPI CCDG 2 cut(s) 101, 109
Lsp1109I GCAGC 1 cut(s) 12
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 107
MalI GATC 2 cut(s) 41, 81
MboI GATC 2 cut(s) 39, 79
MflI RGATCY 1 cut(s) 79
MluCI AATT 1 cut(s) 142
MnlI CCTC 2 cut(s) 70, 94
MroI TCCGGA 1 cut(s) 87
MroXI GAANNNNTTC 1 cut(s) 95
MspI CCGG 1 cut(s) 88
Mva1269I GAATGC 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 22
NdeII GATC 2 cut(s) 39, 79
NlaIII CATG 1 cut(s) 10
NmuCI GTSAC 1 cut(s) 107
NspI RCATGY 1 cut(s) 10
PctI GAATGC 1 cut(s) 27
PdmI GAANNNNTTC 1 cut(s) 95
PkrI GCNGC 2 cut(s) 27, 49
PspPI GGNCC 1 cut(s) 103
PsuI RGATCY 1 cut(s) 79
SatI GCNGC 2 cut(s) 26, 48
Sau3AI GATC 2 cut(s) 39, 79
Sau96I GGNCC 1 cut(s) 103
SetI ASST 2 cut(s) 105, 114
SinI GGWCC 1 cut(s) 103
Sse9I AATT 1 cut(s) 142
SsiI CCGC 1 cut(s) 48
TaaI ACNGT 1 cut(s) 96
TaiI ACGT 1 cut(s) 114
TaqI TCGA 3 cut(s) 30, 42, 99
TasI AATT 1 cut(s) 142
TauI GCSGC 1 cut(s) 50
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 1 cut(s) 25
Tsp45I GTSAC 1 cut(s) 107
TspGWI ACGGA 2 cut(s) 52, 95
VpaK11BI GGWCC 1 cut(s) 103
XceI RCATGY 1 cut(s) 10
XmnI GAANNNNTTC 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.