Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000741

Physical Location & Seq

Genomic Coordinates Reverse (-)

31933242 .. 31935155

Gene Structure 1914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g33900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTCTTACGAGAAGTTCTCCAAGACTTACGGAGATAATTCTCCACCGACGGGTATTCCGGTGAGCTCCAGCAACCCCTACTATAGCCATCCTGCTCATCATCAACATCCTGGTCAATATGACAAGAACTCATCCCAAATGCCTGCTCCTCCTCCTCCTCCTTATCAACCCCGCCCTGGAGCAGCCACTGAGCCGTGGAAATCCGGCCTCTGCGATTGCTTCTCCGATCCCAAAAACTGCTGCATAACCTTTTGTTGTCCATGCATCACTTTTGGTCAAATTGCTGAGATTGTGGACAAAGGCTCTACATCTTGTGGTGCGAGTGGAGCACTATACACACTGATAGCTTGTGTGACTACTTGTCCTTGCATCTATTCATGCTTCTACCGCTCAAAGATGAGGCGGCAGTACTCTTTGGAATCAAGCCCTTGTGGTGATTGTTTGGTTCATTTCTTCTGCGAGCAATGCGCCTTGTGCCAGGAGTACCGTGAGCTCAAGAGTCGTGGTTTCGACATGGCCATCGGATGGCATGGAAATATCGAAGAAAGGAACCGTGAAGTGGCAATGACGCCAGTGCCCCCGATGGTGGAGGAAGGCATGAGTCGCGATAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

205

Amino Acids

22.66

Weight (kDa)

6.29

Isoelectric Point (pI)

62.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAC8	PF04749	66 - 164	1.8e-35	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14870 AT1G14870 AT1G14880 AT5G35525
fragaria_vesca	FvH4_4g33890 FvH4_4g33900 FvH4_4g33900 FvH4_4g33930 FvH4_4g34200
malus_domestica	MD16G1021300.v1.1 MD16G1021400.v1.1
prunus_persica	Prupe.1G331100_v2.0.a1
pyrus_communis	pycom13g01870 pycom16g01900 pycom16g01910
rosa_chinensis	RchiOBHm_Chr0c23g0500741 RchiOBHm_Chr4g0409091 RchiOBHm_Chr4g0443411 RchiOBHm_Chr4g0443421 RchiOBHm_Chr4g0443431 RchiOBHm_Chr4g0443441 RchiOBHm_Chr4g0443451 RchiOBHm_Chr4g0443461 RchiOBHm_Chr5g0070111
rosa_laevigata	RLG00000005927 RLG00000005928 RLG00000005929 RLG00000005930 RLG00000019779
rosa_multiflora	Rmu_co8363857.1_g000001 Rmu_co8469801.1_g000001 Rmu_sc0001669.1_g000019 Rmu_sc0004836.1_g000022 Rmu_sc0004849.1_g000015 Rmu_sc0009670.1_g000002 Rmu_ssc0000122.1_g000016 Rmu_ssc0000122.1_g000017
rosa_roxburghii	Rroxscaffold_3G00257420 Rroxscaffold_5G00383970 Rroxscaffold_5G00383980 Rroxscaffold_5G00384010
rosa_rugosa	Rorug04G0346000 Rorug04G0346100 Rorug04G0346200 Rorug04G0346400 Rorug05G0555800
rosa_samantha	Rh4AG154100 Rh4AG401500 Rh4AG401600 Rh4AG401700 Rh4AG401800 Rh4AG401900 Rh4BG412900 Rh4BG413100 Rh4BG413200 Rh4BG413300 Rh4CG162800 Rh4CG428600 Rh4CG428700 Rh4CG428800 Rh4CG428900 Rh4CG429000 Rh4DG408700 Rh4DG408800 Rh4DG408900 Rh4DG409000
rosa_wichuraiana	Rw4G004920 Rw4G034620 Rw4G034630 Rw4G034640 Rw4G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	525
AccBSI	CCGCTC	1 cut(s)	390
AccII	CGCG	1 cut(s)	606
AciI	CCGC	3 cut(s)	172, 388, 403
AclWI	GGATC	1 cut(s)	221
AcoI	YGGCCR	1 cut(s)	516
AcyI	GRCGYC	1 cut(s)	569
AfaI	GTAC	2 cut(s)	410, 485
AfiI	CCNNNNNNNGG	5 cut(s)	50, 176, 525, 559, 586
AhdI	GACNNNNNGTC	1 cut(s)	360
AjnI	CCWGG	3 cut(s)	109, 175, 477
AluBI	AGCT	3 cut(s)	66, 347, 493
AluI	AGCT	3 cut(s)	66, 347, 493
Alw21I	GWGCWC	3 cut(s)	68, 331, 495
AlwI	GGATC	1 cut(s)	221
AlwNI	CAGNNNCTG	1 cut(s)	188
AoxI	GGCC	2 cut(s)	205, 516
ApeKI	GCWGC	2 cut(s)	182, 240
AspLEI	GCGC	1 cut(s)	470
AsuHPI	GGTGA	2 cut(s)	73, 446
BaeGI	GKGCMC	1 cut(s)	579
BalI	TGGCCA	1 cut(s)	518
BanII	GRGCYC	2 cut(s)	68, 495
Bbv12I	GWGCWC	3 cut(s)	68, 331, 495
BbvI	GCAGC	2 cut(s)	194, 227
BccI	CCATC	4 cut(s)	96, 519, 527, 577
BceAI	ACGGC	1 cut(s)	178
BciT130I	CCWGG	3 cut(s)	111, 177, 479
BfmI	CTRYAG	1 cut(s)	82
BisI	GCNGC	3 cut(s)	183, 241, 404
BlsI	GCNGC	3 cut(s)	184, 242, 405
BmcAI	AGTACT	1 cut(s)	410
Bme1390I	CCNGG	3 cut(s)	111, 177, 479
BmeRI	GACNNNNNGTC	1 cut(s)	360
BmiI	GGNNCC	1 cut(s)	551
BmrFI	CCNGG	3 cut(s)	111, 177, 479
BmsI	GCATC	2 cut(s)	273, 378
BplI	GAGNNNNNCTC	1 cut(s)	34
BpmI	CTGGAG	2 cut(s)	52, 198
BpuEI	CTTGAG	1 cut(s)	479
BsaHI	GRCGYC	1 cut(s)	569
BsaJI	CCNNGG	2 cut(s)	175, 194
BsaWI	WCCGGW	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	5 cut(s)	50, 176, 525, 559, 586
Bse1I	ACTGG	1 cut(s)	572
Bse3DI	GCAATG	2 cut(s)	470, 570
BseBI	CCWGG	3 cut(s)	111, 177, 479
BseDI	CCNNGG	2 cut(s)	175, 194
BseGI	GGATG	4 cut(s)	88, 106, 131, 530
BseLI	CCNNNNNNNGG	5 cut(s)	50, 176, 525, 559, 586
BseMI	GCAATG	2 cut(s)	470, 570
BseMII	CTCAG	2 cut(s)	180, 276
BseNI	ACTGG	1 cut(s)	572
BseRI	GAGGAG	4 cut(s)	138, 141, 144, 147
BseSI	GKGCMC	1 cut(s)	579
BseXI	GCAGC	2 cut(s)	194, 227
Bsh1236I	CGCG	1 cut(s)	606
BshFI	GGCC	2 cut(s)	207, 518
BsiHKAI	GWGCWC	3 cut(s)	68, 331, 495
BsiSI	CCGG	2 cut(s)	59, 204
BslI	CCNNNNNNNGG	5 cut(s)	50, 176, 525, 559, 586
BsnI	GGCC	2 cut(s)	207, 518
Bsp1286I	GDGCHC	4 cut(s)	68, 331, 495, 579
Bsp143I	GATC	1 cut(s)	226
Bsp68I	TCGCGA	1 cut(s)	606
BspACI	CCGC	3 cut(s)	172, 388, 403
BspANI	GGCC	2 cut(s)	207, 518
BspCNI	CTCAG	2 cut(s)	181, 277
BspFNI	CGCG	1 cut(s)	606
BspLI	GGNNCC	1 cut(s)	551
BspPI	GGATC	1 cut(s)	221
BsrBI	CCGCTC	1 cut(s)	390
BsrDI	GCAATG	2 cut(s)	470, 570
BsrI	ACTGG	1 cut(s)	572
BssECI	CCNNGG	2 cut(s)	175, 194
BssMI	GATC	1 cut(s)	226
BssNI	GRCGYC	1 cut(s)	569
Bst2UI	CCWGG	3 cut(s)	111, 177, 479
Bst4CI	ACNGT	2 cut(s)	488, 554
BstACI	GRCGYC	1 cut(s)	569
BstC8I	GCNNGC	2 cut(s)	144, 461
BstDEI	CTNAG	2 cut(s)	189, 285
BstDSI	CCRYGG	1 cut(s)	194
BstF5I	GGATG	4 cut(s)	88, 106, 131, 530
BstFNI	CGCG	1 cut(s)	606
BstHHI	GCGC	1 cut(s)	470
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	5 cut(s)	326, 387, 465, 474, 603
BstNI	CCWGG	3 cut(s)	111, 177, 479
BstSCI	CCNGG	3 cut(s)	109, 175, 477
BstSFI	CTRYAG	1 cut(s)	82
BstSLI	GKGCMC	1 cut(s)	579
BstUI	CGCG	1 cut(s)	606
BstV1I	GCAGC	2 cut(s)	194, 227
BsuRI	GGCC	2 cut(s)	207, 518
BtgI	CCRYGG	1 cut(s)	194
BtsCI	GGATG	4 cut(s)	88, 106, 131, 530
BtsIMutI	CAGTG	3 cut(s)	186, 338, 579
BtuMI	TCGCGA	1 cut(s)	606
Cac8I	GCNNGC	2 cut(s)	144, 461
CaiI	CAGNNNCTG	1 cut(s)	188
CfoI	GCGC	1 cut(s)	470
CseI	GACGC	1 cut(s)	577
Csp6I	GTAC	2 cut(s)	409, 484
CspCI	CAANNNNNGTGG	2 cut(s)	484, 519
CviAII	CATG	5 cut(s)	261, 378, 514, 530, 598
CviQI	GTAC	2 cut(s)	409, 484
DdeI	CTNAG	2 cut(s)	189, 285
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
DriI	GACNNNNNGTC	1 cut(s)	360
EaeI	YGGCCR	1 cut(s)	516
Eam1105I	GACNNNNNGTC	1 cut(s)	360
Ecl136II	GAGCTC	2 cut(s)	66, 493
Eco24I	GRGCYC	2 cut(s)	68, 495
Eco53kI	GAGCTC	2 cut(s)	66, 493
EcoICRI	GAGCTC	2 cut(s)	66, 493
EcoRII	CCWGG	3 cut(s)	109, 175, 477
EcoT22I	ATGCAT	1 cut(s)	266
EcoT38I	GRGCYC	2 cut(s)	68, 495
FaeI	CATG	5 cut(s)	264, 381, 517, 533, 601
FaiI	YATR	9 cut(s)	84, 120, 245, 262, 334, 379, 515, 531, 599
FatI	CATG	5 cut(s)	260, 377, 513, 529, 597
FauI	CCCGC	1 cut(s)	179
Fnu4HI	GCNGC	3 cut(s)	183, 241, 404
FokI	GGATG	4 cut(s)	75, 93, 118, 537
FriOI	GRGCYC	2 cut(s)	68, 495
Fsp4HI	GCNGC	3 cut(s)	183, 241, 404
GlaI	GCGC	1 cut(s)	469
GluI	GCNGC	3 cut(s)	183, 241, 404
GsuI	CTGGAG	2 cut(s)	52, 198
HaeIII	GGCC	2 cut(s)	207, 518
HapII	CCGG	2 cut(s)	59, 204
HgaI	GACGC	1 cut(s)	577
HhaI	GCGC	1 cut(s)	470
Hin1I	GRCGYC	1 cut(s)	569
Hin1II	CATG	5 cut(s)	264, 381, 517, 533, 601
Hin6I	GCGC	1 cut(s)	468
HinP1I	GCGC	1 cut(s)	468
HinfI	GANTC	3 cut(s)	419, 499, 601
HpaII	CCGG	2 cut(s)	59, 204
HphI	GGTGA	2 cut(s)	73, 446
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	2 cut(s)	226, 524
Hpy188III	TCNNGA	2 cut(s)	496, 605
Hpy8I	GTNNAC	1 cut(s)	295
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	1 cut(s)	587
HpyCH4III	ACNGT	2 cut(s)	488, 554
HpyCH4V	TGCA	3 cut(s)	243, 264, 369
HpyF10VI	GCNNNNNNNGC	5 cut(s)	326, 387, 465, 474, 603
HpyF3I	CTNAG	2 cut(s)	189, 285
Hsp92I	GRCGYC	1 cut(s)	569
Hsp92II	CATG	5 cut(s)	264, 381, 517, 533, 601
HspAI	GCGC	1 cut(s)	468
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	4 cut(s)	71, 151, 179, 326
Lsp1109I	GCAGC	2 cut(s)	194, 227
LweI	GCATC	2 cut(s)	273, 378
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	1 cut(s)	228
MbiI	CCGCTC	1 cut(s)	390
MboI	GATC	1 cut(s)	226
MboII	GAAGA	2 cut(s)	445, 554
MhlI	GDGCHC	4 cut(s)	68, 331, 495, 579
MlsI	TGGCCA	1 cut(s)	518
MluCI	AATT	2 cut(s)	37, 279
MluNI	TGGCCA	1 cut(s)	518
MlyI	GAGTC	2 cut(s)	508, 610
MnlI	CCTC	7 cut(s)	159, 162, 165, 168, 218, 393, 583
Mox20I	TGGCCA	1 cut(s)	518
Mph1103I	ATGCAT	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	518
Msp20I	TGGCCA	1 cut(s)	518
MspI	CCGG	2 cut(s)	59, 204
MspR9I	CCNGG	3 cut(s)	111, 177, 479
MvaI	CCWGG	3 cut(s)	111, 177, 479
MvnI	CGCG	1 cut(s)	606
MwoI	GCNNNNNNNGC	5 cut(s)	326, 387, 465, 474, 603
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	5 cut(s)	264, 381, 517, 533, 601
NlaIV	GGNNCC	1 cut(s)	551
NmuCI	GTSAC	1 cut(s)	352
NruI	TCGCGA	1 cut(s)	606
NsiI	ATGCAT	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	419
PflMI	CCANNNNNTGG	1 cut(s)	525
PkrI	GCNGC	3 cut(s)	184, 242, 405
PleI	GAGTC	2 cut(s)	507, 609
PpsI	GAGTC	2 cut(s)	507, 609
Psp124BI	GAGCTC	2 cut(s)	68, 495
Psp6I	CCWGG	3 cut(s)	109, 175, 477
PspGI	CCWGG	3 cut(s)	109, 175, 477
PspN4I	GGNNCC	1 cut(s)	551
PstNI	CAGNNNCTG	1 cut(s)	188
RruI	TCGCGA	1 cut(s)	606
RsaI	GTAC	2 cut(s)	410, 485
RsaNI	GTAC	2 cut(s)	409, 484
SacI	GAGCTC	2 cut(s)	68, 495
SatI	GCNGC	3 cut(s)	183, 241, 404
Sau3AI	GATC	1 cut(s)	226
ScaI	AGTACT	1 cut(s)	410
SchI	GAGTC	2 cut(s)	508, 610
ScrFI	CCNGG	3 cut(s)	111, 177, 479
SduI	GDGCHC	4 cut(s)	68, 331, 495, 579
SetI	ASST	4 cut(s)	68, 251, 349, 495
SfaNI	GCATC	2 cut(s)	273, 378
SfcI	CTRYAG	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	2 cut(s)	37, 279
SsiI	CCGC	3 cut(s)	172, 388, 403
SstI	GAGCTC	2 cut(s)	68, 495
StyD4I	CCNGG	3 cut(s)	109, 175, 477
TaaI	ACNGT	2 cut(s)	488, 554
TaqI	TCGA	2 cut(s)	510, 540
TasI	AATT	2 cut(s)	37, 279
TatI	WGTACW	1 cut(s)	408
TauI	GCSGC	1 cut(s)	406
TfiI	GAWTC	1 cut(s)	419
TscAI	CASTG	3 cut(s)	193, 345, 579
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	2 cut(s)	182, 240
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	2 cut(s)	366, 437
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	3 cut(s)	193, 345, 579
Van91I	CCANNNNNTGG	1 cut(s)	525
ZrmI	AGTACT	1 cut(s)	410
Zsp2I	ATGCAT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.