Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001669.1

Orthogroup ID

OG0000741

Physical Location & Seq

Genomic Coordinates Reverse (-)

83101 .. 84201

Gene Structure 1101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001669.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgtcctcatcaaacttccacatgcaggatgctcctagaacccccgagccttggaaatctggcctccttgactgcttctccgatcccaaaagctgttgcttaacatattggtgtccatgcatcacttttggccggattgctgagattgtggataaaggctctccatcttgtgctgcaagtggagcaatgtacacgctcatagctatcgtgattggtattccttgctgctattcatgctcctaccgcacgaagatgagggagcagtacgctttggacgggaaccgttgttatgattttttgattcactgcttctgtgagaactgcgccttgtgccaggagtatcgtgagctccaaagtcgcggttttaacatggccatcggatgggatggaaatatagatgcaaggaaccgcgaagtggcaatggccccagtgcctccgatggtggaggaaggcatgaaacgataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

154

Amino Acids

17.33

Weight (kDa)

5.67

Isoelectric Point (pI)

51.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14870 AT1G14870 AT1G14880 AT5G35525
fragaria_vesca	FvH4_4g33890 FvH4_4g33900 FvH4_4g33900 FvH4_4g33930 FvH4_4g34200
malus_domestica	MD16G1021300.v1.1 MD16G1021400.v1.1
prunus_persica	Prupe.1G331100_v2.0.a1
pyrus_communis	pycom13g01870 pycom16g01900 pycom16g01910
rosa_chinensis	RchiOBHm_Chr0c23g0500741 RchiOBHm_Chr4g0409091 RchiOBHm_Chr4g0443411 RchiOBHm_Chr4g0443421 RchiOBHm_Chr4g0443431 RchiOBHm_Chr4g0443441 RchiOBHm_Chr4g0443451 RchiOBHm_Chr4g0443461 RchiOBHm_Chr5g0070111
rosa_laevigata	RLG00000005927 RLG00000005928 RLG00000005929 RLG00000005930 RLG00000019779
rosa_multiflora	Rmu_co8363857.1_g000001 Rmu_co8469801.1_g000001 Rmu_sc0001669.1_g000019 Rmu_sc0004836.1_g000022 Rmu_sc0004849.1_g000015 Rmu_sc0009670.1_g000002 Rmu_ssc0000122.1_g000016 Rmu_ssc0000122.1_g000017
rosa_roxburghii	Rroxscaffold_3G00257420 Rroxscaffold_5G00383970 Rroxscaffold_5G00383980 Rroxscaffold_5G00384010
rosa_rugosa	Rorug04G0346000 Rorug04G0346100 Rorug04G0346200 Rorug04G0346400 Rorug05G0555800
rosa_samantha	Rh4AG154100 Rh4AG401500 Rh4AG401600 Rh4AG401700 Rh4AG401800 Rh4AG401900 Rh4BG412900 Rh4BG413100 Rh4BG413200 Rh4BG413300 Rh4CG162800 Rh4CG428600 Rh4CG428700 Rh4CG428800 Rh4CG428900 Rh4CG429000 Rh4DG408700 Rh4DG408800 Rh4DG408900 Rh4DG409000
rosa_wichuraiana	Rw4G004920 Rw4G034620 Rw4G034630 Rw4G034640 Rw4G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	381
AccII	CGCG	2 cut(s)	360, 411
AciI	CCGC	3 cut(s)	244, 360, 409
AclWI	GGATC	1 cut(s)	77
AcoI	YGGCCR	2 cut(s)	130, 372
AfaI	GTAC	2 cut(s)	191, 266
AfiI	CCNNNNNNNGG	4 cut(s)	25, 51, 381, 415
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	3 cut(s)	93, 203, 349
AluI	AGCT	3 cut(s)	93, 203, 349
Alw21I	GWGCWC	1 cut(s)	351
AlwI	GGATC	1 cut(s)	77
Ama87I	CYCGRG	1 cut(s)	44
AoxI	GGCC	4 cut(s)	61, 130, 372, 423
ApeKI	GCWGC	2 cut(s)	173, 225
AspLEI	GCGC	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	424
AvaI	CYCGRG	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	2 cut(s)	160, 212
BccI	CCATC	5 cut(s)	172, 375, 380, 383, 433
BciT130I	CCWGG	1 cut(s)	335
BfaI	CTAG	1 cut(s)	36
BisI	GCNGC	2 cut(s)	174, 226
BlsI	GCNGC	2 cut(s)	175, 227
Bme1390I	CCNGG	1 cut(s)	335
BmeT110I	CYCGRG	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	3 cut(s)	281, 407, 426
BmrFI	CCNGG	1 cut(s)	335
BmrI	ACTGGG	1 cut(s)	422
BmsI	GCATC	3 cut(s)	19, 129, 388
BmuI	ACTGGG	1 cut(s)	422
BsaJI	CCNNGG	1 cut(s)	50
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 51, 381, 415
Bse1I	ACTGG	1 cut(s)	428
Bse3DI	GCAATG	2 cut(s)	192, 426
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	50
BseGI	GGATG	3 cut(s)	34, 386, 391
BseLI	CCNNNNNNNGG	4 cut(s)	25, 51, 381, 415
BseMI	GCAATG	2 cut(s)	192, 426
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	428
BseXI	GCAGC	2 cut(s)	160, 212
Bsh1236I	CGCG	2 cut(s)	360, 411
BshFI	GGCC	4 cut(s)	63, 132, 374, 425
BsiHKAI	GWGCWC	1 cut(s)	351
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	133
BslI	CCNNNNNNNGG	4 cut(s)	25, 51, 381, 415
BsnI	GGCC	4 cut(s)	63, 132, 374, 425
BsoBI	CYCGRG	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp1407I	TGTACA	1 cut(s)	189
Bsp143I	GATC	1 cut(s)	82
BspACI	CCGC	3 cut(s)	244, 360, 409
BspANI	GGCC	4 cut(s)	63, 132, 374, 425
BspCNI	CTCAG	1 cut(s)	133
BspFNI	CGCG	2 cut(s)	360, 411
BspLI	GGNNCC	3 cut(s)	281, 407, 426
BspPI	GGATC	1 cut(s)	77
BsrDI	GCAATG	2 cut(s)	192, 426
BsrGI	TGTACA	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	428
BssECI	CCNNGG	1 cut(s)	50
BssMI	GATC	1 cut(s)	82
BssT1I	CCWWGG	1 cut(s)	50
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	1 cut(s)	284
BstAUI	TGTACA	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	141
BstF5I	GGATG	3 cut(s)	34, 386, 391
BstFNI	CGCG	2 cut(s)	360, 411
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	1 cut(s)	85
BstMBI	GATC	1 cut(s)	82
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 234, 243, 330
BstNI	CCWGG	1 cut(s)	335
BstNSI	RCATGY	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	333
BstUI	CGCG	2 cut(s)	360, 411
BstV1I	GCAGC	2 cut(s)	160, 212
BsuRI	GGCC	4 cut(s)	63, 132, 374, 425
BtsCI	GGATG	3 cut(s)	34, 386, 391
BtsI	GCAGTG	1 cut(s)	304
BtsIMutI	CAGTG	2 cut(s)	304, 435
CfoI	GCGC	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	424
Csp6I	GTAC	2 cut(s)	190, 265
CviAII	CATG	5 cut(s)	22, 117, 234, 370, 454
CviJI	RGCY	9 cut(s)	49, 63, 93, 132, 159, 203, 349, 374, 425
CviKI_1	RGCY	9 cut(s)	49, 63, 93, 132, 159, 203, 349, 374, 425
CviQI	GTAC	2 cut(s)	190, 265
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
EaeI	YGGCCR	2 cut(s)	130, 372
Ecl136II	GAGCTC	1 cut(s)	349
Eco130I	CCWWGG	1 cut(s)	50
Eco24I	GRGCYC	1 cut(s)	351
Eco53kI	GAGCTC	1 cut(s)	349
Eco88I	CYCGRG	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	50
EcoT22I	ATGCAT	1 cut(s)	122
EcoT38I	GRGCYC	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	50
FaeI	CATG	5 cut(s)	25, 120, 237, 373, 457
FaiI	YATR	9 cut(s)	23, 106, 118, 200, 235, 291, 371, 395, 455
FatI	CATG	5 cut(s)	21, 116, 233, 369, 453
Fnu4HI	GCNGC	2 cut(s)	174, 226
FokI	GGATG	3 cut(s)	41, 393, 398
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	2 cut(s)	174, 226
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	2 cut(s)	174, 226
HaeIII	GGCC	4 cut(s)	63, 132, 374, 425
HapII	CCGG	1 cut(s)	133
HhaI	GCGC	1 cut(s)	326
Hin1II	CATG	5 cut(s)	25, 120, 237, 373, 457
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HinfI	GANTC	1 cut(s)	301
HpaII	CCGG	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	192
Hpy188I	TCNGA	3 cut(s)	82, 380, 438
Hpy188III	TCNNGA	2 cut(s)	208, 344
Hpy8I	GTNNAC	1 cut(s)	192
HpyAV	CCTTC	1 cut(s)	443
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4V	TGCA	4 cut(s)	25, 120, 176, 401
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 234, 243, 330
HpyF3I	CTNAG	1 cut(s)	141
Hsp92II	CATG	5 cut(s)	25, 120, 237, 373, 457
HspAI	GCGC	1 cut(s)	324
Kzo9I	GATC	1 cut(s)	82
LmnI	GCTCC	5 cut(s)	37, 182, 242, 259, 354
LpnPI	CCDG	6 cut(s)	11, 45, 146, 320, 347, 441
Lsp1109I	GCAGC	2 cut(s)	160, 212
LweI	GCATC	3 cut(s)	19, 129, 388
MaeI	CTAG	1 cut(s)	36
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	351
MlsI	TGGCCA	1 cut(s)	374
MluNI	TGGCCA	1 cut(s)	374
MnlI	CCTC	5 cut(s)	16, 74, 249, 439, 444
Mox20I	TGGCCA	1 cut(s)	374
Mph1103I	ATGCAT	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	374
MseI	TTAA	2 cut(s)	101, 366
MslI	CAYNNNNRTG	2 cut(s)	109, 251
Msp20I	TGGCCA	1 cut(s)	374
MspI	CCGG	1 cut(s)	133
MspR9I	CCNGG	1 cut(s)	335
MvaI	CCWGG	1 cut(s)	335
MvnI	CGCG	2 cut(s)	360, 411
MwoI	GCNNNNNNNGC	4 cut(s)	182, 234, 243, 330
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	5 cut(s)	25, 120, 237, 373, 457
NlaIV	GGNNCC	3 cut(s)	281, 407, 426
NsiI	ATGCAT	1 cut(s)	122
NspI	RCATGY	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	301
PflMI	CCANNNNNTGG	1 cut(s)	381
PkrI	GCNGC	2 cut(s)	175, 227
Psp124BI	GAGCTC	1 cut(s)	351
Psp6I	CCWGG	1 cut(s)	333
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	3 cut(s)	281, 407, 426
PspPI	GGNCC	1 cut(s)	424
RsaI	GTAC	2 cut(s)	191, 266
RsaNI	GTAC	2 cut(s)	190, 265
RseI	CAYNNNNRTG	2 cut(s)	109, 251
SacI	GAGCTC	1 cut(s)	351
SaqAI	TTAA	2 cut(s)	101, 366
SatI	GCNGC	2 cut(s)	174, 226
Sau3AI	GATC	1 cut(s)	82
Sau96I	GGNCC	1 cut(s)	424
ScrFI	CCNGG	1 cut(s)	335
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	3 cut(s)	95, 205, 351
SfaNI	GCATC	3 cut(s)	19, 129, 388
SmiMI	CAYNNNNRTG	2 cut(s)	109, 251
SsiI	CCGC	3 cut(s)	244, 360, 409
SspMI	CTAG	1 cut(s)	36
SstI	GAGCTC	1 cut(s)	351
StyD4I	CCNGG	1 cut(s)	333
StyI	CCWWGG	1 cut(s)	50
TaaI	ACNGT	1 cut(s)	284
TatI	WGTACW	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	301
Tru1I	TTAA	2 cut(s)	101, 366
Tru9I	TTAA	2 cut(s)	101, 366
TscAI	CASTG	2 cut(s)	311, 435
TseI	GCWGC	2 cut(s)	173, 225
TspDTI	ATGAA	1 cut(s)	222
TspRI	CASTG	2 cut(s)	311, 435
Van91I	CCANNNNNTGG	1 cut(s)	381
XceI	RCATGY	1 cut(s)	25
XspI	CTAG	1 cut(s)	36
Zsp2I	ATGCAT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.