Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000741

Physical Location & Seq

Genomic Coordinates Reverse (-)

63524409 .. 63525261

Gene Structure 853 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00383980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTACTCATCAAAGCCGAGTTCTTACGAGAAGTTCTCGGAAACCACCGATGCTTCTCCGCCAACGGGTATTCCGGTGAGCTCCAGCAACCCCTATTATAGTCATCCTGCTCATCATCAACATCCTGATCAATATGACAAGAGCAACTCTGAAATGCCTGCTCCTCATCCTTATCAACACCACACTAGAGCCCCTGAGCCGTGGAAATCCGGCCTCTGCGACTGCTTCTCCGATCCCAAAAACTGCTGCATAACCTTCTGTTGTCCGTGCATCACTTTTGGTCAAATTGCTGAGATTGTGGACAAAGGTTCTACATCTTGTGGTGCAAGTGGAGCACTGTACACACTGATTGCTTGTGTGACTACTTGTCCTTGCATCTATTCATGCTTCTACCGCTCGAAGATGAGGCGGCAGTACGCTTTGGAATCTAGCCCTTGTGGTGATTGTTTGGTTCATTTCTTCTGCGAGCAATGCGCCTTGTGCCAGGAGTACCGTGAGCTCAAGAGTCGCGGTTTTGACATGGCCATCGGTACATATATACTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

182

Amino Acids

20.31

Weight (kDa)

6.03

Isoelectric Point (pI)

51.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAC8	PF04749	68 - 166	1.7e-35	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14870 AT1G14870 AT1G14880 AT5G35525
fragaria_vesca	FvH4_4g33890 FvH4_4g33900 FvH4_4g33900 FvH4_4g33930 FvH4_4g34200
malus_domestica	MD16G1021300.v1.1 MD16G1021400.v1.1
prunus_persica	Prupe.1G331100_v2.0.a1
pyrus_communis	pycom13g01870 pycom16g01900 pycom16g01910
rosa_chinensis	RchiOBHm_Chr0c23g0500741 RchiOBHm_Chr4g0409091 RchiOBHm_Chr4g0443411 RchiOBHm_Chr4g0443421 RchiOBHm_Chr4g0443431 RchiOBHm_Chr4g0443441 RchiOBHm_Chr4g0443451 RchiOBHm_Chr4g0443461 RchiOBHm_Chr5g0070111
rosa_laevigata	RLG00000005927 RLG00000005928 RLG00000005929 RLG00000005930 RLG00000019779
rosa_multiflora	Rmu_co8363857.1_g000001 Rmu_co8469801.1_g000001 Rmu_sc0001669.1_g000019 Rmu_sc0004836.1_g000022 Rmu_sc0004849.1_g000015 Rmu_sc0009670.1_g000002 Rmu_ssc0000122.1_g000016 Rmu_ssc0000122.1_g000017
rosa_roxburghii	Rroxscaffold_3G00257420 Rroxscaffold_5G00383970 Rroxscaffold_5G00383980 Rroxscaffold_5G00384010
rosa_rugosa	Rorug04G0346000 Rorug04G0346100 Rorug04G0346200 Rorug04G0346400 Rorug05G0555800
rosa_samantha	Rh4AG154100 Rh4AG401500 Rh4AG401600 Rh4AG401700 Rh4AG401800 Rh4AG401900 Rh4BG412900 Rh4BG413100 Rh4BG413200 Rh4BG413300 Rh4CG162800 Rh4CG428600 Rh4CG428700 Rh4CG428800 Rh4CG428900 Rh4CG429000 Rh4DG408700 Rh4DG408800 Rh4DG408900 Rh4DG409000
rosa_wichuraiana	Rw4G004920 Rw4G034620 Rw4G034630 Rw4G034640 Rw4G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	396
AccII	CGCG	1 cut(s)	510
AciI	CCGC	4 cut(s)	59, 394, 409, 510
AclWI	GGATC	1 cut(s)	227
AcoI	YGGCCR	1 cut(s)	522
AfaI	GTAC	5 cut(s)	5, 341, 416, 491, 532
AfiI	CCNNNNNNNGG	1 cut(s)	65
AhdI	GACNNNNNGTC	1 cut(s)	366
AjnI	CCWGG	1 cut(s)	483
AluBI	AGCT	2 cut(s)	81, 499
AluI	AGCT	2 cut(s)	81, 499
Alw21I	GWGCWC	3 cut(s)	83, 337, 501
AlwI	GGATC	1 cut(s)	227
AoxI	GGCC	2 cut(s)	211, 522
ApeKI	GCWGC	1 cut(s)	246
AspLEI	GCGC	1 cut(s)	476
AsuHPI	GGTGA	2 cut(s)	88, 452
BalI	TGGCCA	1 cut(s)	524
BanII	GRGCYC	3 cut(s)	83, 193, 501
Bbv12I	GWGCWC	3 cut(s)	83, 337, 501
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	1 cut(s)	533
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	485
BclI	TGATCA	1 cut(s)	127
BfaI	CTAG	2 cut(s)	186, 429
BisI	GCNGC	2 cut(s)	247, 410
BlsI	GCNGC	2 cut(s)	248, 411
Bme1390I	CCNGG	1 cut(s)	485
BmeRI	GACNNNNNGTC	1 cut(s)	366
BmrFI	CCNGG	1 cut(s)	485
BmsI	GCATC	3 cut(s)	40, 279, 384
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	1 cut(s)	67
Bpu10I	CCTNAGC	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	485
BsaJI	CCNNGG	1 cut(s)	200
BsaWI	WCCGGW	1 cut(s)	73
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse3DI	GCAATG	1 cut(s)	476
BseBI	CCWGG	1 cut(s)	485
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	3 cut(s)	103, 121, 166
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMI	GCAATG	1 cut(s)	476
BseMII	CTCAG	2 cut(s)	186, 282
BseRI	GAGGAG	1 cut(s)	153
BseXI	GCAGC	1 cut(s)	233
Bsh1236I	CGCG	1 cut(s)	510
BshFI	GGCC	2 cut(s)	213, 524
BsiHKAI	GWGCWC	3 cut(s)	83, 337, 501
BsiSI	CCGG	2 cut(s)	74, 210
BslI	CCNNNNNNNGG	1 cut(s)	65
BsnI	GGCC	2 cut(s)	213, 524
Bsp1286I	GDGCHC	4 cut(s)	83, 193, 337, 501
Bsp1407I	TGTACA	1 cut(s)	339
Bsp143I	GATC	2 cut(s)	127, 232
BspACI	CCGC	4 cut(s)	59, 394, 409, 510
BspANI	GGCC	2 cut(s)	213, 524
BspCNI	CTCAG	2 cut(s)	187, 283
BspFNI	CGCG	1 cut(s)	510
BspPI	GGATC	1 cut(s)	227
BsrBI	CCGCTC	1 cut(s)	396
BsrDI	GCAATG	1 cut(s)	476
BsrGI	TGTACA	1 cut(s)	339
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	2 cut(s)	127, 232
Bst2UI	CCWGG	1 cut(s)	485
Bst4CI	ACNGT	2 cut(s)	339, 494
BstAUI	TGTACA	1 cut(s)	339
BstC8I	GCNNGC	2 cut(s)	159, 467
BstDEI	CTNAG	2 cut(s)	195, 291
BstDSI	CCRYGG	1 cut(s)	200
BstF5I	GGATG	3 cut(s)	103, 121, 166
BstFNI	CGCG	1 cut(s)	510
BstHHI	GCGC	1 cut(s)	476
BstKTI	GATC	2 cut(s)	130, 235
BstMBI	GATC	2 cut(s)	127, 232
BstMWI	GCNNNNNNNGC	4 cut(s)	332, 393, 471, 480
BstNI	CCWGG	1 cut(s)	485
BstSCI	CCNGG	1 cut(s)	483
BstUI	CGCG	1 cut(s)	510
BstV1I	GCAGC	1 cut(s)	233
BsuRI	GGCC	2 cut(s)	213, 524
BtgI	CCRYGG	1 cut(s)	200
BtsCI	GGATG	3 cut(s)	103, 121, 166
BtsIMutI	CAGTG	2 cut(s)	335, 344
Cac8I	GCNNGC	2 cut(s)	159, 467
CfoI	GCGC	1 cut(s)	476
Csp6I	GTAC	5 cut(s)	4, 340, 415, 490, 531
CviAII	CATG	2 cut(s)	384, 520
CviJI	RGCY	8 cut(s)	16, 81, 191, 199, 213, 432, 499, 524
CviKI_1	RGCY	8 cut(s)	16, 81, 191, 199, 213, 432, 499, 524
CviQI	GTAC	5 cut(s)	4, 340, 415, 490, 531
DdeI	CTNAG	2 cut(s)	195, 291
DpnI	GATC	2 cut(s)	129, 234
DpnII	GATC	2 cut(s)	127, 232
DriI	GACNNNNNGTC	1 cut(s)	366
EaeI	YGGCCR	1 cut(s)	522
Eam1105I	GACNNNNNGTC	1 cut(s)	366
EciI	GGCGGA	1 cut(s)	48
Ecl136II	GAGCTC	2 cut(s)	81, 499
Eco24I	GRGCYC	3 cut(s)	83, 193, 501
Eco53kI	GAGCTC	2 cut(s)	81, 499
EcoICRI	GAGCTC	2 cut(s)	81, 499
EcoRII	CCWGG	1 cut(s)	483
EcoT38I	GRGCYC	3 cut(s)	83, 193, 501
FaeI	CATG	2 cut(s)	387, 523
FaiI	YATR	8 cut(s)	99, 135, 251, 385, 521, 535, 537, 539
FatI	CATG	2 cut(s)	383, 519
FbaI	TGATCA	1 cut(s)	127
Fnu4HI	GCNGC	2 cut(s)	247, 410
FokI	GGATG	3 cut(s)	90, 108, 153
FriOI	GRGCYC	3 cut(s)	83, 193, 501
Fsp4HI	GCNGC	2 cut(s)	247, 410
FspBI	CTAG	2 cut(s)	186, 429
GlaI	GCGC	1 cut(s)	475
GluI	GCNGC	2 cut(s)	247, 410
GsuI	CTGGAG	1 cut(s)	67
HaeIII	GGCC	2 cut(s)	213, 524
HapII	CCGG	2 cut(s)	74, 210
HhaI	GCGC	1 cut(s)	476
Hin1II	CATG	2 cut(s)	387, 523
Hin6I	GCGC	1 cut(s)	474
HinP1I	GCGC	1 cut(s)	474
HinfI	GANTC	2 cut(s)	425, 505
HpaII	CCGG	2 cut(s)	74, 210
HphI	GGTGA	2 cut(s)	88, 452
Hpy166II	GTNNAC	2 cut(s)	301, 342
Hpy188I	TCNGA	3 cut(s)	40, 151, 232
Hpy188III	TCNNGA	2 cut(s)	125, 502
Hpy8I	GTNNAC	2 cut(s)	301, 342
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	2 cut(s)	339, 494
HpyCH4V	TGCA	4 cut(s)	249, 270, 326, 375
HpyF10VI	GCNNNNNNNGC	4 cut(s)	332, 393, 471, 480
HpyF3I	CTNAG	2 cut(s)	195, 291
Hsp92II	CATG	2 cut(s)	387, 523
HspAI	GCGC	1 cut(s)	474
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	127, 232
LmnI	GCTCC	3 cut(s)	86, 166, 332
LpnPI	CCDG	9 cut(s)	87, 97, 120, 138, 171, 207, 223, 470, 497
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	3 cut(s)	40, 279, 384
MaeI	CTAG	2 cut(s)	186, 429
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	2 cut(s)	129, 234
MbiI	CCGCTC	1 cut(s)	396
MboI	GATC	2 cut(s)	127, 232
MboII	GAAGA	2 cut(s)	412, 451
MhlI	GDGCHC	4 cut(s)	83, 193, 337, 501
MlsI	TGGCCA	1 cut(s)	524
MluCI	AATT	1 cut(s)	285
MluNI	TGGCCA	1 cut(s)	524
MlyI	GAGTC	1 cut(s)	514
MnlI	CCTC	3 cut(s)	174, 224, 399
Mox20I	TGGCCA	1 cut(s)	524
MscI	TGGCCA	1 cut(s)	524
MseI	TTAA	1 cut(s)	547
Msp20I	TGGCCA	1 cut(s)	524
MspI	CCGG	2 cut(s)	74, 210
MspR9I	CCNGG	1 cut(s)	485
MvaI	CCWGG	1 cut(s)	485
MvnI	CGCG	1 cut(s)	510
MwoI	GCNNNNNNNGC	4 cut(s)	332, 393, 471, 480
NdeII	GATC	2 cut(s)	127, 232
NlaIII	CATG	2 cut(s)	387, 523
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	358
PfeI	GAWTC	1 cut(s)	425
PkrI	GCNGC	2 cut(s)	248, 411
PleI	GAGTC	1 cut(s)	513
PpsI	GAGTC	1 cut(s)	513
Psp124BI	GAGCTC	2 cut(s)	83, 501
Psp6I	CCWGG	1 cut(s)	483
PspGI	CCWGG	1 cut(s)	483
RsaI	GTAC	5 cut(s)	5, 341, 416, 491, 532
RsaNI	GTAC	5 cut(s)	4, 340, 415, 490, 531
SacI	GAGCTC	2 cut(s)	83, 501
SaqAI	TTAA	1 cut(s)	547
SatI	GCNGC	2 cut(s)	247, 410
Sau3AI	GATC	2 cut(s)	127, 232
SchI	GAGTC	1 cut(s)	514
ScrFI	CCNGG	1 cut(s)	485
SduI	GDGCHC	4 cut(s)	83, 193, 337, 501
SetI	ASST	4 cut(s)	83, 257, 310, 501
SfaNI	GCATC	3 cut(s)	40, 279, 384
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
Sse9I	AATT	1 cut(s)	285
SsiI	CCGC	4 cut(s)	59, 394, 409, 510
SspMI	CTAG	2 cut(s)	186, 429
SstI	GAGCTC	2 cut(s)	83, 501
StyD4I	CCNGG	1 cut(s)	483
TaaI	ACNGT	2 cut(s)	339, 494
TaqI	TCGA	1 cut(s)	398
TasI	AATT	1 cut(s)	285
TatI	WGTACW	2 cut(s)	3, 339
TauI	GCSGC	1 cut(s)	412
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	1 cut(s)	547
Tru9I	TTAA	1 cut(s)	547
TscAI	CASTG	2 cut(s)	342, 351
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	1 cut(s)	246
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	2 cut(s)	372, 443
TspGWI	ACGGA	1 cut(s)	255
TspRI	CASTG	2 cut(s)	342, 351
XspI	CTAG	2 cut(s)	186, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.