Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0000741

Physical Location & Seq

Genomic Coordinates Reverse (-)

1175013 .. 1176639

Gene Structure 1627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g01900.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTTCGATTTGCTGAAAATAAAGGAATATGTTCGATTTTGGCGGCATGGCCAAGTTATAAGACGGGGGATTGCAATTTTTTTTTTCCCAGTTCATTTTGCAATATCAATCAAGTCAACATTAGAAAAACCTGAAGAAATTCAGGTGGATCCACTGATACTGACTGAACCTTATTTTACTACTTCTCACGAAGACATGAGCTCCCACAGTGGTCACAGTCGCCATCGCGACCTCGTTCCTTGGTCCACCGGGCTCTTCGATTGCTTCTCCGATCCAAAAAACTGTTGCGTAACACTTTGGTGTCCATGCATCACTTTTGGCCAAATTGCAGAGACCGTCGATAAGGGTTCTATATCTTGTTGCGCAAGTGGAGCGCTGTACATACTGATTGCTTGTGTGACGGCTTTTCCGTGTATCTATTCATGCTTCTACCGCTCCAAAATGAGACAGCAATACACCCTGGAAGGGAGCCCTTGTGGTGACTGCTTGGTTCATTGCTTCTGTGAGGGCTGCGCCTTGTGCCAAGAGTACCGCGAGCTCAAGTTTCGCGGTTTCAACATGAAACTTGGATGGCATGGAAACATCAAGGAAAGGAACCGTGAAGTTGGAATGAGTCCGGTGGTGGAGGAAGGCATGAGTCGAGATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

217

Amino Acids

24.76

Weight (kDa)

7.03

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14870 AT1G14870 AT1G14880 AT5G35525
fragaria_vesca	FvH4_4g33890 FvH4_4g33900 FvH4_4g33900 FvH4_4g33930 FvH4_4g34200
malus_domestica	MD16G1021300.v1.1 MD16G1021400.v1.1
prunus_persica	Prupe.1G331100_v2.0.a1
pyrus_communis	pycom13g01870 pycom16g01900 pycom16g01910
rosa_chinensis	RchiOBHm_Chr0c23g0500741 RchiOBHm_Chr4g0409091 RchiOBHm_Chr4g0443411 RchiOBHm_Chr4g0443421 RchiOBHm_Chr4g0443431 RchiOBHm_Chr4g0443441 RchiOBHm_Chr4g0443451 RchiOBHm_Chr4g0443461 RchiOBHm_Chr5g0070111
rosa_laevigata	RLG00000005927 RLG00000005928 RLG00000005929 RLG00000005930 RLG00000019779
rosa_multiflora	Rmu_co8363857.1_g000001 Rmu_co8469801.1_g000001 Rmu_sc0001669.1_g000019 Rmu_sc0004836.1_g000022 Rmu_sc0004849.1_g000015 Rmu_sc0009670.1_g000002 Rmu_ssc0000122.1_g000016 Rmu_ssc0000122.1_g000017
rosa_roxburghii	Rroxscaffold_3G00257420 Rroxscaffold_5G00383970 Rroxscaffold_5G00383980 Rroxscaffold_5G00384010
rosa_rugosa	Rorug04G0346000 Rorug04G0346100 Rorug04G0346200 Rorug04G0346400 Rorug05G0555800
rosa_samantha	Rh4AG154100 Rh4AG401500 Rh4AG401600 Rh4AG401700 Rh4AG401800 Rh4AG401900 Rh4BG412900 Rh4BG413100 Rh4BG413200 Rh4BG413300 Rh4CG162800 Rh4CG428600 Rh4CG428700 Rh4CG428800 Rh4CG428900 Rh4CG429000 Rh4DG408700 Rh4DG408800 Rh4DG408900 Rh4DG409000
rosa_wichuraiana	Rw4G004920 Rw4G034620 Rw4G034630 Rw4G034640 Rw4G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	59
Acc16I	TGCGCA	1 cut(s)	364
AccBSI	CCGCTC	1 cut(s)	435
AccII	CGCG	3 cut(s)	228, 534, 549
AciI	CCGC	4 cut(s)	43, 433, 532, 549
AclWI	GGATC	3 cut(s)	143, 156, 266
AcoI	YGGCCR	2 cut(s)	49, 319
AcsI	RAATTY	1 cut(s)	138
AcuI	CTGAAG	1 cut(s)	153
AfaI	GTAC	2 cut(s)	380, 530
AfeI	AGCGCT	1 cut(s)	375
AfiI	CCNNNNNNNGG	1 cut(s)	465
AgsI	TTSAA	1 cut(s)	556
AjnI	CCWGG	1 cut(s)	459
AleI	CACNNNNGTG	1 cut(s)	298
AluBI	AGCT	2 cut(s)	201, 538
AluI	AGCT	2 cut(s)	201, 538
Alw21I	GWGCWC	2 cut(s)	203, 540
Alw26I	GTCTC	2 cut(s)	326, 439
AlwI	GGATC	3 cut(s)	143, 156, 266
Aor51HI	AGCGCT	1 cut(s)	375
AoxI	GGCC	2 cut(s)	49, 319
ApeKI	GCWGC	1 cut(s)	510
ApoI	RAATTY	1 cut(s)	138
Asp700I	GAANNNNTTC	2 cut(s)	30, 138
AspLEI	GCGC	3 cut(s)	365, 376, 515
AspS9I	GGNCC	1 cut(s)	243
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	491
AvaII	GGWCC	1 cut(s)	243
BalI	TGGCCA	2 cut(s)	51, 321
BamHI	GGATCC	1 cut(s)	148
BanII	GRGCYC	4 cut(s)	203, 255, 473, 540
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	2 cut(s)	203, 540
BbvI	GCAGC	1 cut(s)	497
BccI	CCATC	2 cut(s)	231, 564
BceAI	ACGGC	1 cut(s)	417
BciT130I	CCWGG	1 cut(s)	461
BcnI	CCSGG	1 cut(s)	250
BcoDI	GTCTC	2 cut(s)	326, 439
BfoI	RGCGCY	1 cut(s)	377
BisI	GCNGC	2 cut(s)	44, 511
BlsI	GCNGC	2 cut(s)	45, 512
Bme1390I	CCNGG	2 cut(s)	250, 461
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	3 cut(s)	150, 470, 596
BmrFI	CCNGG	2 cut(s)	250, 461
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	318
BmuI	ACTGGG	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	524
BpuMI	CCSGG	1 cut(s)	250
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	2 cut(s)	239, 459
BsaWI	WCCGGW	1 cut(s)	616
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 215, 460, 490
Bsc4I	CCNNNNNNNGG	1 cut(s)	465
Bse1I	ACTGG	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	461
BseDI	CCNNGG	2 cut(s)	239, 459
BseGI	GGATG	1 cut(s)	575
BseLI	CCNNNNNNNGG	1 cut(s)	465
BseMI	GCAATG	1 cut(s)	493
BseNI	ACTGG	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	497
Bsh1236I	CGCG	3 cut(s)	228, 534, 549
BshFI	GGCC	2 cut(s)	51, 321
BsiHKAI	GWGCWC	2 cut(s)	203, 540
BsiSI	CCGG	2 cut(s)	249, 617
BslI	CCNNNNNNNGG	1 cut(s)	465
BsmAI	GTCTC	2 cut(s)	326, 439
BsnI	GGCC	2 cut(s)	51, 321
Bso31I	GGTCTC	1 cut(s)	326
Bsp1286I	GDGCHC	4 cut(s)	203, 255, 473, 540
Bsp1407I	TGTACA	1 cut(s)	378
Bsp143I	GATC	2 cut(s)	148, 271
Bsp68I	TCGCGA	1 cut(s)	228
BspACI	CCGC	4 cut(s)	43, 433, 532, 549
BspANI	GGCC	2 cut(s)	51, 321
BspFNI	CGCG	3 cut(s)	228, 534, 549
BspLI	GGNNCC	3 cut(s)	150, 470, 596
BspPI	GGATC	3 cut(s)	143, 156, 266
BspQI	GCTCTTC	1 cut(s)	260
BspTNI	GGTCTC	1 cut(s)	326
BsrBI	CCGCTC	1 cut(s)	435
BsrDI	GCAATG	1 cut(s)	493
BsrGI	TGTACA	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	2 cut(s)	239, 459
BssMI	GATC	2 cut(s)	148, 271
BssT1I	CCWWGG	1 cut(s)	239
Bst2UI	CCWGG	1 cut(s)	461
Bst4CI	ACNGT	5 cut(s)	209, 218, 284, 337, 599
Bst6I	CTCTTC	1 cut(s)	260
BstAUI	TGTACA	1 cut(s)	378
BstC8I	GCNNGC	1 cut(s)	536
BstF5I	GGATG	1 cut(s)	575
BstFNI	CGCG	3 cut(s)	228, 534, 549
BstH2I	RGCGCY	1 cut(s)	377
BstHHI	GCGC	3 cut(s)	365, 376, 515
BstKTI	GATC	2 cut(s)	151, 274
BstMAI	GTCTC	2 cut(s)	326, 439
BstMBI	GATC	2 cut(s)	148, 271
BstMWI	GCNNNNNNNGC	3 cut(s)	371, 432, 519
BstNI	CCWGG	1 cut(s)	461
BstSCI	CCNGG	2 cut(s)	248, 459
BstUI	CGCG	3 cut(s)	228, 534, 549
BstV1I	GCAGC	1 cut(s)	497
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BsuRI	GGCC	2 cut(s)	51, 321
BtgZI	GCGATG	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	575
BtsIMutI	CAGTG	2 cut(s)	152, 214
BtuMI	TCGCGA	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	536
CfoI	GCGC	3 cut(s)	365, 376, 515
Cfr13I	GGNCC	1 cut(s)	243
Csp6I	GTAC	2 cut(s)	379, 529
CviAII	CATG	7 cut(s)	47, 196, 306, 423, 559, 575, 634
CviJI	RGCY	8 cut(s)	51, 201, 253, 321, 404, 471, 510, 538
CviKI_1	RGCY	8 cut(s)	51, 201, 253, 321, 404, 471, 510, 538
CviQI	GTAC	2 cut(s)	379, 529
DpnI	GATC	2 cut(s)	150, 273
DpnII	GATC	2 cut(s)	148, 271
EaeI	YGGCCR	2 cut(s)	49, 319
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Ecl136II	GAGCTC	2 cut(s)	201, 538
Eco130I	CCWWGG	1 cut(s)	239
Eco24I	GRGCYC	4 cut(s)	203, 255, 473, 540
Eco31I	GGTCTC	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	243
Eco47III	AGCGCT	1 cut(s)	375
Eco53kI	GAGCTC	2 cut(s)	201, 538
Eco57I	CTGAAG	1 cut(s)	153
EcoICRI	GAGCTC	2 cut(s)	201, 538
EcoRII	CCWGG	1 cut(s)	459
EcoT14I	CCWWGG	1 cut(s)	239
EcoT22I	ATGCAT	1 cut(s)	311
EcoT38I	GRGCYC	4 cut(s)	203, 255, 473, 540
ErhI	CCWWGG	1 cut(s)	239
FaeI	CATG	7 cut(s)	50, 199, 309, 426, 562, 578, 637
FatI	CATG	7 cut(s)	46, 195, 305, 422, 558, 574, 633
Fnu4HI	GCNGC	2 cut(s)	44, 511
FokI	GGATG	1 cut(s)	582
FriOI	GRGCYC	4 cut(s)	203, 255, 473, 540
Fsp4HI	GCNGC	2 cut(s)	44, 511
FspI	TGCGCA	1 cut(s)	364
GlaI	GCGC	3 cut(s)	364, 375, 514
GluI	GCNGC	2 cut(s)	44, 511
HaeII	RGCGCY	1 cut(s)	377
HaeIII	GGCC	2 cut(s)	51, 321
HapII	CCGG	2 cut(s)	249, 617
HhaI	GCGC	3 cut(s)	365, 376, 515
Hin1II	CATG	7 cut(s)	50, 199, 309, 426, 562, 578, 637
Hin6I	GCGC	3 cut(s)	363, 374, 513
HinP1I	GCGC	3 cut(s)	363, 374, 513
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HinfI	GANTC	2 cut(s)	613, 637
HpaII	CCGG	2 cut(s)	249, 617
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	2 cut(s)	117, 246
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	3 cut(s)	188, 227, 641
Hpy8I	GTNNAC	2 cut(s)	117, 246
Hpy99I	CGWCG	1 cut(s)	341
HpyAV	CCTTC	2 cut(s)	458, 623
HpyCH4III	ACNGT	5 cut(s)	209, 218, 284, 337, 599
HpyCH4V	TGCA	4 cut(s)	74, 101, 309, 329
HpyF10VI	GCNNNNNNNGC	3 cut(s)	371, 432, 519
Hsp92II	CATG	7 cut(s)	50, 199, 309, 426, 562, 578, 637
HspAI	GCGC	3 cut(s)	363, 374, 513
Kzo9I	GATC	2 cut(s)	148, 271
LguI	GCTCTTC	1 cut(s)	260
LmnI	GCTCC	4 cut(s)	206, 371, 440, 468
LpnPI	CCDG	7 cut(s)	102, 128, 144, 262, 446, 473, 630
Lsp1109I	GCAGC	1 cut(s)	497
LweI	GCATC	1 cut(s)	318
MaeIII	GTNAC	4 cut(s)	212, 289, 397, 479
MalI	GATC	2 cut(s)	150, 273
MbiI	CCGCTC	1 cut(s)	435
MboI	GATC	2 cut(s)	148, 271
MboII	GAAGA	3 cut(s)	146, 203, 247
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	4 cut(s)	203, 255, 473, 540
MlsI	TGGCCA	2 cut(s)	51, 321
MluCI	AATT	3 cut(s)	75, 138, 324
MluNI	TGGCCA	2 cut(s)	51, 321
MlyI	GAGTC	2 cut(s)	622, 646
MmeI	TCCRAC	1 cut(s)	586
MnlI	CCTC	3 cut(s)	242, 499, 619
Mox20I	TGGCCA	2 cut(s)	51, 321
Mph1103I	ATGCAT	1 cut(s)	311
MroXI	GAANNNNTTC	2 cut(s)	30, 138
MscI	TGGCCA	2 cut(s)	51, 321
MslI	CAYNNNNRTG	1 cut(s)	298
Msp20I	TGGCCA	2 cut(s)	51, 321
MspI	CCGG	2 cut(s)	249, 617
MspR9I	CCNGG	2 cut(s)	250, 461
MvaI	CCWGG	1 cut(s)	461
MvnI	CGCG	3 cut(s)	228, 534, 549
MwoI	GCNNNNNNNGC	3 cut(s)	371, 432, 519
NciI	CCSGG	1 cut(s)	250
NdeII	GATC	2 cut(s)	148, 271
NlaIII	CATG	7 cut(s)	50, 199, 309, 426, 562, 578, 637
NlaIV	GGNNCC	3 cut(s)	150, 470, 596
NmuCI	GTSAC	3 cut(s)	212, 397, 479
NruI	TCGCGA	1 cut(s)	228
NsbI	TGCGCA	1 cut(s)	364
NsiI	ATGCAT	1 cut(s)	311
OliI	CACNNNNGTG	1 cut(s)	298
PciSI	GCTCTTC	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	1 cut(s)	407
PdmI	GAANNNNTTC	2 cut(s)	30, 138
PkrI	GCNGC	2 cut(s)	45, 512
PleI	GAGTC	2 cut(s)	621, 645
PpsI	GAGTC	2 cut(s)	621, 645
PsiI	TTATAA	1 cut(s)	59
Psp124BI	GAGCTC	2 cut(s)	203, 540
Psp6I	CCWGG	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	459
PspN4I	GGNNCC	3 cut(s)	150, 470, 596
PspPI	GGNCC	1 cut(s)	243
PsuI	RGATCY	1 cut(s)	148
RruI	TCGCGA	1 cut(s)	228
RsaI	GTAC	2 cut(s)	380, 530
RsaNI	GTAC	2 cut(s)	379, 529
RseI	CAYNNNNRTG	1 cut(s)	298
SacI	GAGCTC	2 cut(s)	203, 540
SapI	GCTCTTC	1 cut(s)	260
SatI	GCNGC	2 cut(s)	44, 511
Sau3AI	GATC	2 cut(s)	148, 271
Sau96I	GGNCC	1 cut(s)	243
SchI	GAGTC	2 cut(s)	622, 646
ScrFI	CCNGG	2 cut(s)	250, 461
SduI	GDGCHC	4 cut(s)	203, 255, 473, 540
SetI	ASST	6 cut(s)	133, 147, 172, 203, 234, 540
SfaNI	GCATC	1 cut(s)	318
SinI	GGWCC	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	298
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	3 cut(s)	75, 138, 324
SsiI	CCGC	4 cut(s)	43, 433, 532, 549
SstI	GAGCTC	2 cut(s)	203, 540
StyD4I	CCNGG	2 cut(s)	248, 459
StyI	CCWWGG	1 cut(s)	239
TaaI	ACNGT	5 cut(s)	209, 218, 284, 337, 599
TaqI	TCGA	5 cut(s)	6, 34, 258, 339, 640
TasI	AATT	3 cut(s)	75, 138, 324
TatI	WGTACW	1 cut(s)	378
TauI	GCSGC	1 cut(s)	46
TscAI	CASTG	2 cut(s)	159, 214
TseFI	GTSAC	3 cut(s)	212, 397, 479
TseI	GCWGC	1 cut(s)	510
Tsp45I	GTSAC	3 cut(s)	212, 397, 479
TspDTI	ATGAA	4 cut(s)	83, 411, 482, 575
TspGWI	ACGGA	1 cut(s)	399
TspRI	CASTG	2 cut(s)	159, 214
VpaK11BI	GGWCC	1 cut(s)	243
XapI	RAATTY	1 cut(s)	138
XmnI	GAANNNNTTC	2 cut(s)	30, 138
Zsp2I	ATGCAT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.