Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000741

Physical Location & Seq

Genomic Coordinates Reverse (-)

1527324 .. 1529338

Gene Structure 2015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1021400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTACTCGTCAAACGCAAATGGATACGAGAAGTACTCCTCCTCCGACCACCTCCACCAACATGTCGATGCACCGGCCACCGGTATCCCGGTCAGCTCCGGTACTGAACCTTATTTCACTACTTCTCACGAAGACATGAGCTCCCAAAGTGGCCACAGCCACATGACCTACCCACCTCCCCATCTCGGCCCTCGCGCCCTCGTTCCTTGGTCCACCGGCCTCTTCGACTGTTTCTCCGGTCCAAAAAACTGTTGCATAACATTTTGGTGTCCATGTATCACTTTTGGCCAAATTGCAGAGATTGTCGATAAGGGTTCTATACCTTGTGGCGCAAGTGGAGCGCTTTACACACTGATTGCTTGTGTGACGGCTTTTCCATGTATCTATTCATGCTTCTACCGCTCCAAAATGAGACAGCAATACAGCCTGGAAGAGAGCCCTTGTGGTGACTGCTTGGTTCATTGCTTCTGTGAGGGCTGCGCCTTGTGCCAAGAGTACCGCGAGCTCAAGTTTCGCGGTTTCGACATGAAACTTGGATGGCATGGAAACATCGAGGAAAGGAACCGTGAAGTTGGAATGACTCCGGTGGCTCCGGTGGTGGAGGAAGGCATGAGTCGAGATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

209

Amino Acids

23.05

Weight (kDa)

5.67

Isoelectric Point (pI)

51.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAC8	PF04749	70 - 168	4.9e-35	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14870 AT1G14870 AT1G14880 AT5G35525
fragaria_vesca	FvH4_4g33890 FvH4_4g33900 FvH4_4g33900 FvH4_4g33930 FvH4_4g34200
malus_domestica	MD16G1021300.v1.1 MD16G1021400.v1.1
prunus_persica	Prupe.1G331100_v2.0.a1
pyrus_communis	pycom13g01870 pycom16g01900 pycom16g01910
rosa_chinensis	RchiOBHm_Chr0c23g0500741 RchiOBHm_Chr4g0409091 RchiOBHm_Chr4g0443411 RchiOBHm_Chr4g0443421 RchiOBHm_Chr4g0443431 RchiOBHm_Chr4g0443441 RchiOBHm_Chr4g0443451 RchiOBHm_Chr4g0443461 RchiOBHm_Chr5g0070111
rosa_laevigata	RLG00000005927 RLG00000005928 RLG00000005929 RLG00000005930 RLG00000019779
rosa_multiflora	Rmu_co8363857.1_g000001 Rmu_co8469801.1_g000001 Rmu_sc0001669.1_g000019 Rmu_sc0004836.1_g000022 Rmu_sc0004849.1_g000015 Rmu_sc0009670.1_g000002 Rmu_ssc0000122.1_g000016 Rmu_ssc0000122.1_g000017
rosa_roxburghii	Rroxscaffold_3G00257420 Rroxscaffold_5G00383970 Rroxscaffold_5G00383980 Rroxscaffold_5G00384010
rosa_rugosa	Rorug04G0346000 Rorug04G0346100 Rorug04G0346200 Rorug04G0346400 Rorug05G0555800
rosa_samantha	Rh4AG154100 Rh4AG401500 Rh4AG401600 Rh4AG401700 Rh4AG401800 Rh4AG401900 Rh4BG412900 Rh4BG413100 Rh4BG413200 Rh4BG413300 Rh4CG162800 Rh4CG428600 Rh4CG428700 Rh4CG428800 Rh4CG428900 Rh4CG429000 Rh4DG408700 Rh4DG408800 Rh4DG408900 Rh4DG409000
rosa_wichuraiana	Rw4G004920 Rw4G034620 Rw4G034630 Rw4G034640 Rw4G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	402
AccII	CGCG	3 cut(s)	195, 501, 516
AciI	CCGC	3 cut(s)	400, 499, 516
AcoI	YGGCCR	3 cut(s)	75, 151, 286
AfaI	GTAC	4 cut(s)	5, 35, 103, 497
AfeI	AGCGCT	1 cut(s)	342
AfiI	CCNNNNNNNGG	2 cut(s)	80, 185
AflIII	ACRYGT	1 cut(s)	61
AgeI	ACCGGT	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	426
AluBI	AGCT	3 cut(s)	96, 141, 505
AluI	AGCT	3 cut(s)	96, 141, 505
Alw21I	GWGCWC	2 cut(s)	143, 507
Alw26I	GTCTC	1 cut(s)	406
Aor51HI	AGCGCT	1 cut(s)	342
AoxI	GGCC	5 cut(s)	75, 151, 187, 217, 286
ApeKI	GCWGC	1 cut(s)	477
AsiGI	ACCGGT	1 cut(s)	80
AspLEI	GCGC	4 cut(s)	197, 332, 343, 482
AspS9I	GGNCC	3 cut(s)	188, 210, 239
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	458
AvaII	GGWCC	2 cut(s)	210, 239
BalI	TGGCCA	2 cut(s)	153, 288
BanII	GRGCYC	3 cut(s)	143, 440, 507
BbsI	GAAGAC	1 cut(s)	138
Bbv12I	GWGCWC	2 cut(s)	143, 507
BbvI	GCAGC	1 cut(s)	464
BccI	CCATC	2 cut(s)	189, 531
BceAI	ACGGC	1 cut(s)	384
BciT130I	CCWGG	1 cut(s)	428
BciVI	GTATCC	2 cut(s)	17, 95
BcnI	CCSGG	1 cut(s)	89
BcoDI	GTCTC	1 cut(s)	406
BfoI	RGCGCY	1 cut(s)	344
BfuI	GTATCC	2 cut(s)	17, 95
BisI	GCNGC	1 cut(s)	478
BlsI	GCNGC	1 cut(s)	479
BmcAI	AGTACT	1 cut(s)	35
Bme1390I	CCNGG	2 cut(s)	89, 428
Bme18I	GGWCC	2 cut(s)	210, 239
BmgT120I	GGNCC	3 cut(s)	188, 210, 239
BmiI	GGNNCC	2 cut(s)	563, 591
BmrFI	CCNGG	2 cut(s)	89, 428
BmsI	GCATC	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	138
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpuEI	CTTGAG	1 cut(s)	491
BpuMI	CCSGG	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	206
BsaWI	WCCGGW	5 cut(s)	80, 98, 236, 583, 592
BsaXI	ACNNNNNCTCC	6 cut(s)	26, 56, 125, 155, 218, 248
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 185
Bse118I	RCCGGY	3 cut(s)	73, 80, 215
Bse3DI	GCAATG	1 cut(s)	460
BseBI	CCWGG	1 cut(s)	428
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	1 cut(s)	542
BseLI	CCNNNNNNNGG	2 cut(s)	80, 185
BseMI	GCAATG	1 cut(s)	460
BseRI	GAGGAG	2 cut(s)	28, 31
BseXI	GCAGC	1 cut(s)	464
Bsh1236I	CGCG	3 cut(s)	195, 501, 516
BshFI	GGCC	5 cut(s)	77, 153, 189, 219, 288
BshTI	ACCGGT	1 cut(s)	80
BsiHKAI	GWGCWC	2 cut(s)	143, 507
BsiSI	CCGG	8 cut(s)	74, 81, 89, 99, 216, 237, 584, 593
BslI	CCNNNNNNNGG	2 cut(s)	80, 185
BsmAI	GTCTC	1 cut(s)	406
BsnI	GGCC	5 cut(s)	77, 153, 189, 219, 288
Bsp1286I	GDGCHC	3 cut(s)	143, 440, 507
BspACI	CCGC	3 cut(s)	400, 499, 516
BspANI	GGCC	5 cut(s)	77, 153, 189, 219, 288
BspFNI	CGCG	3 cut(s)	195, 501, 516
BspLI	GGNNCC	2 cut(s)	563, 591
BsrBI	CCGCTC	1 cut(s)	402
BsrDI	GCAATG	1 cut(s)	460
BsrFI	RCCGGY	3 cut(s)	73, 80, 215
BssAI	RCCGGY	3 cut(s)	73, 80, 215
BssECI	CCNNGG	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	3 cut(s)	230, 251, 566
Bst6I	CTCTTC	2 cut(s)	227, 426
BstC8I	GCNNGC	1 cut(s)	503
BstF5I	GGATG	1 cut(s)	542
BstFNI	CGCG	3 cut(s)	195, 501, 516
BstH2I	RGCGCY	1 cut(s)	344
BstHHI	GCGC	4 cut(s)	197, 332, 343, 482
BstMAI	GTCTC	1 cut(s)	406
BstMWI	GCNNNNNNNGC	3 cut(s)	338, 399, 486
BstNI	CCWGG	1 cut(s)	428
BstNSI	RCATGY	1 cut(s)	65
BstSCI	CCNGG	2 cut(s)	87, 426
BstUI	CGCG	3 cut(s)	195, 501, 516
BstV1I	GCAGC	1 cut(s)	464
BstV2I	GAAGAC	1 cut(s)	138
BsuI	GTATCC	2 cut(s)	17, 95
BsuRI	GGCC	5 cut(s)	77, 153, 189, 219, 288
BtsCI	GGATG	1 cut(s)	542
BtsIMutI	CAGTG	1 cut(s)	350
Cac8I	GCNNGC	1 cut(s)	503
CfoI	GCGC	4 cut(s)	197, 332, 343, 482
Cfr10I	RCCGGY	3 cut(s)	73, 80, 215
Cfr13I	GGNCC	3 cut(s)	188, 210, 239
Csp6I	GTAC	4 cut(s)	4, 34, 102, 496
CspAI	ACCGGT	1 cut(s)	80
CviAII	CATG	9 cut(s)	62, 136, 163, 273, 378, 390, 526, 542, 610
CviQI	GTAC	4 cut(s)	4, 34, 102, 496
EaeI	YGGCCR	3 cut(s)	75, 151, 286
Eam1104I	CTCTTC	2 cut(s)	227, 426
EarI	CTCTTC	2 cut(s)	227, 426
Ecl136II	GAGCTC	2 cut(s)	141, 505
Eco130I	CCWWGG	1 cut(s)	206
Eco24I	GRGCYC	3 cut(s)	143, 440, 507
Eco47I	GGWCC	2 cut(s)	210, 239
Eco47III	AGCGCT	1 cut(s)	342
Eco53kI	GAGCTC	2 cut(s)	141, 505
EcoICRI	GAGCTC	2 cut(s)	141, 505
EcoRII	CCWGG	1 cut(s)	426
EcoT14I	CCWWGG	1 cut(s)	206
EcoT38I	GRGCYC	3 cut(s)	143, 440, 507
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	9 cut(s)	65, 139, 166, 276, 381, 393, 529, 545, 613
FatI	CATG	9 cut(s)	61, 135, 162, 272, 377, 389, 525, 541, 609
Fnu4HI	GCNGC	1 cut(s)	478
FokI	GGATG	1 cut(s)	549
FriOI	GRGCYC	3 cut(s)	143, 440, 507
Fsp4HI	GCNGC	1 cut(s)	478
GlaI	GCGC	4 cut(s)	196, 331, 342, 481
GluI	GCNGC	1 cut(s)	478
HaeII	RGCGCY	1 cut(s)	344
HaeIII	GGCC	5 cut(s)	77, 153, 189, 219, 288
HapII	CCGG	8 cut(s)	74, 81, 89, 99, 216, 237, 584, 593
HhaI	GCGC	4 cut(s)	197, 332, 343, 482
Hin1II	CATG	9 cut(s)	65, 139, 166, 276, 381, 393, 529, 545, 613
Hin6I	GCGC	4 cut(s)	195, 330, 341, 480
HinP1I	GCGC	4 cut(s)	195, 330, 341, 480
HinfI	GANTC	2 cut(s)	580, 613
HpaII	CCGG	8 cut(s)	74, 81, 89, 99, 216, 237, 584, 593
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	2 cut(s)	128, 617
Hpy8I	GTNNAC	1 cut(s)	213
HpyAV	CCTTC	1 cut(s)	599
HpyCH4III	ACNGT	3 cut(s)	230, 251, 566
HpyCH4V	TGCA	3 cut(s)	71, 255, 296
HpyF10VI	GCNNNNNNNGC	3 cut(s)	338, 399, 486
Hsp92II	CATG	9 cut(s)	65, 139, 166, 276, 381, 393, 529, 545, 613
HspAI	GCGC	4 cut(s)	195, 330, 341, 480
LmnI	GCTCC	5 cut(s)	101, 146, 338, 407, 595
Lsp1109I	GCAGC	1 cut(s)	464
LweI	GCATC	1 cut(s)	58
MaeIII	GTNAC	2 cut(s)	364, 446
MbiI	CCGCTC	1 cut(s)	402
MboII	GAAGA	3 cut(s)	143, 214, 443
MhlI	GDGCHC	3 cut(s)	143, 440, 507
MlsI	TGGCCA	2 cut(s)	153, 288
MluCI	AATT	1 cut(s)	291
MluNI	TGGCCA	2 cut(s)	153, 288
MlyI	GAGTC	2 cut(s)	574, 622
MmeI	TCCRAC	2 cut(s)	69, 553
Mox20I	TGGCCA	2 cut(s)	153, 288
MscI	TGGCCA	2 cut(s)	153, 288
MslI	CAYNNNNRTG	3 cut(s)	60, 66, 265
Msp20I	TGGCCA	2 cut(s)	153, 288
MspI	CCGG	8 cut(s)	74, 81, 89, 99, 216, 237, 584, 593
MspR9I	CCNGG	2 cut(s)	89, 428
MvaI	CCWGG	1 cut(s)	428
MvnI	CGCG	3 cut(s)	195, 501, 516
MwoI	GCNNNNNNNGC	3 cut(s)	338, 399, 486
NciI	CCSGG	1 cut(s)	89
NlaIII	CATG	9 cut(s)	65, 139, 166, 276, 381, 393, 529, 545, 613
NlaIV	GGNNCC	2 cut(s)	563, 591
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	2 cut(s)	364, 446
NspI	RCATGY	1 cut(s)	65
PciI	ACATGT	1 cut(s)	61
PinAI	ACCGGT	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	479
PleI	GAGTC	2 cut(s)	574, 621
PpsI	GAGTC	2 cut(s)	574, 621
PscI	ACATGT	1 cut(s)	61
Psp124BI	GAGCTC	2 cut(s)	143, 507
Psp6I	CCWGG	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	2 cut(s)	563, 591
PspPI	GGNCC	3 cut(s)	188, 210, 239
RsaI	GTAC	4 cut(s)	5, 35, 103, 497
RsaNI	GTAC	4 cut(s)	4, 34, 102, 496
RseI	CAYNNNNRTG	3 cut(s)	60, 66, 265
SacI	GAGCTC	2 cut(s)	143, 507
SatI	GCNGC	1 cut(s)	478
Sau96I	GGNCC	3 cut(s)	188, 210, 239
ScaI	AGTACT	1 cut(s)	35
SchI	GAGTC	2 cut(s)	574, 622
ScrFI	CCNGG	2 cut(s)	89, 428
SduI	GDGCHC	3 cut(s)	143, 440, 507
SetI	ASST	8 cut(s)	54, 98, 112, 143, 170, 178, 325, 507
SfaNI	GCATC	1 cut(s)	58
SinI	GGWCC	2 cut(s)	210, 239
SmiMI	CAYNNNNRTG	3 cut(s)	60, 66, 265
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	1 cut(s)	291
SsiI	CCGC	3 cut(s)	400, 499, 516
SstI	GAGCTC	2 cut(s)	143, 507
StyD4I	CCNGG	2 cut(s)	87, 426
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	3 cut(s)	230, 251, 566
TaqI	TCGA	6 cut(s)	66, 225, 306, 522, 552, 616
TasI	AATT	1 cut(s)	291
TatI	WGTACW	2 cut(s)	3, 33
TscAI	CASTG	1 cut(s)	357
TseFI	GTSAC	2 cut(s)	364, 446
TseI	GCWGC	1 cut(s)	477
Tsp45I	GTSAC	2 cut(s)	364, 446
TspDTI	ATGAA	3 cut(s)	378, 449, 542
TspRI	CASTG	1 cut(s)	357
VpaK11BI	GGWCC	2 cut(s)	210, 239
XceI	RCATGY	1 cut(s)	65
ZrmI	AGTACT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.