RLG00000005927

Protein PLANT CADMIUM RESISTANCE 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000741
Physical Location & Seq
Forward (+)
2861420 .. 2863000
1581 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005927

Sequence Viewer

Length: 603 bp
ATGTCCTCATCAAAACCGAATTCGTACGGGAAGTTCTCAGATGCTCTTCCCGCAACGGGTATTCCGGTGAACTCCAGCAACCCCTACTTTAGTCAACCTGCTCATAATCACCACCAGCATCATGATAACTCCCAGATGCCGGATGCTCCTCCATATCATCTCCATGCTAGAACACCCGAGCCTTGGAAATCTGGCCTTCTTGACTGCTTCTCCGATCCCAAAAGCTGCTGCCTAACACTTTGGTGTCCCTGCGTCACCTTTGGCCAGATTGCTGAGATTGTGGATAAAGGCTCTACATCTTGTGGTGCAAGTGGAGCACTGTACGCGTTGATAGCTTTTGTGACTGGTTGTTCTTGCATCTATTCATGCTTCTACCGCTCCAAACTGAGGCAGCAGTACACTTTGGACGAGAGCCCTTGTGGTGATTGCTTGGTTCACTGCTTCTGTGAGTATTGCGCTCTGTGCCAGGAGTACCGCGAGCTCCAAAGTCGTGGTTTCAACATGGCCGTCGGATGGCATGGAAATATGGATGCAAAGAACCACGAAGTGGCAGTGGGCTCGGTGCCCCCCATGGTGGAGGAAGTCATGAGCCGTGATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

201

Amino Acids

22.09

Weight (kDa)

6.02

Isoelectric Point (pI)

52.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 62 - 160 5.7e-36 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 106
AccB1I GGYRCC 1 cut(s) 562
AccB7I CCANNNNNTGG 1 cut(s) 547
AccBSI CCGCTC 1 cut(s) 378
AccII CGCG 2 cut(s) 326, 477
AciI CCGC 3 cut(s) 51, 376, 475
AclWI GGATC 1 cut(s) 209
AcoI YGGCCR 2 cut(s) 262, 504
AcsI RAATTY 1 cut(s) 19
AdeI CACNNNGTG 1 cut(s) 547
AfaI GTAC 4 cut(s) 26, 323, 398, 473
AfiI CCNNNNNNNGG 7 cut(s) 56, 139, 183, 387, 513, 547, 574
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 1 cut(s) 499
AjnI CCWGG 1 cut(s) 465
AleI CACNNNNGTG 1 cut(s) 241
AluBI AGCT 3 cut(s) 225, 335, 481
AluI AGCT 3 cut(s) 225, 335, 481
Alw21I GWGCWC 2 cut(s) 319, 483
AlwI GGATC 1 cut(s) 209
Ama87I CYCGRG 1 cut(s) 176
AoxI GGCC 3 cut(s) 193, 262, 504
ApeKI GCWGC 3 cut(s) 225, 228, 391
ApoI RAATTY 1 cut(s) 19
AspLEI GCGC 1 cut(s) 458
AsuHPI GGTGA 4 cut(s) 79, 101, 247, 434
AvaI CYCGRG 1 cut(s) 176
BaeGI GKGCMC 1 cut(s) 567
BalI TGGCCA 1 cut(s) 264
BanI GGYRCC 1 cut(s) 562
BanII GRGCYC 3 cut(s) 416, 483, 560
Bbv12I GWGCWC 2 cut(s) 319, 483
BbvI GCAGC 3 cut(s) 212, 215, 403
BccI CCATC 1 cut(s) 507
BceAI ACGGC 2 cut(s) 491, 576
BcgI CGANNNNNNTGC 2 cut(s) 540, 574
BciT130I CCWGG 1 cut(s) 467
BfaI CTAG 1 cut(s) 168
BfuAI ACCTGC 1 cut(s) 106
BisI GCNGC 3 cut(s) 226, 229, 392
BlsI GCNGC 3 cut(s) 227, 230, 393
Bme1390I CCNGG 1 cut(s) 467
BmeT110I CYCGRG 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 564
BmrFI CCNGG 1 cut(s) 467
BmsI GCATC 6 cut(s) 31, 126, 127, 133, 366, 520
BpmI CTGGAG 1 cut(s) 58
BsaJI CCNNGG 2 cut(s) 182, 570
BsaWI WCCGGW 1 cut(s) 64
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 7 cut(s) 56, 139, 183, 387, 513, 547, 574
Bse1I ACTGG 1 cut(s) 349
BseBI CCWGG 1 cut(s) 467
BseDI CCNNGG 2 cut(s) 182, 570
BseGI GGATG 3 cut(s) 148, 518, 535
BseLI CCNNNNNNNGG 7 cut(s) 56, 139, 183, 387, 513, 547, 574
BseMII CTCAG 3 cut(s) 51, 264, 377
BseNI ACTGG 1 cut(s) 349
BseRI GAGGAG 1 cut(s) 138
BseSI GKGCMC 1 cut(s) 567
BseXI GCAGC 3 cut(s) 212, 215, 403
Bsh1236I CGCG 2 cut(s) 326, 477
BshFI GGCC 3 cut(s) 195, 264, 506
BshNI GGYRCC 1 cut(s) 562
BsiHKAI GWGCWC 2 cut(s) 319, 483
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 2 cut(s) 65, 140
BsiWI CGTACG 1 cut(s) 24
BslFI GGGAC 1 cut(s) 231
BslI CCNNNNNNNGG 7 cut(s) 56, 139, 183, 387, 513, 547, 574
BsmFI GGGAC 1 cut(s) 231
BsnI GGCC 3 cut(s) 195, 264, 506
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 5 cut(s) 319, 416, 483, 560, 567
Bsp143I GATC 1 cut(s) 214
Bsp19I CCATGG 1 cut(s) 570
BspACI CCGC 3 cut(s) 51, 376, 475
BspANI GGCC 3 cut(s) 195, 264, 506
BspCNI CTCAG 3 cut(s) 50, 265, 378
BspFNI CGCG 2 cut(s) 326, 477
BspHI TCATGA 2 cut(s) 121, 585
BspLI GGNNCC 1 cut(s) 564
BspMI ACCTGC 1 cut(s) 106
BspPI GGATC 1 cut(s) 209
BspQI GCTCTTC 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 562
BsrBI CCGCTC 1 cut(s) 378
BsrI ACTGG 1 cut(s) 349
BssECI CCNNGG 2 cut(s) 182, 570
BssMI GATC 1 cut(s) 214
BssT1I CCWWGG 2 cut(s) 182, 570
Bst2UI CCWGG 1 cut(s) 467
Bst4CI ACNGT 1 cut(s) 321
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 479
BstDEI CTNAG 3 cut(s) 37, 273, 386
BstDSI CCRYGG 1 cut(s) 570
BstF5I GGATG 3 cut(s) 148, 518, 535
BstFNI CGCG 2 cut(s) 326, 477
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 1 cut(s) 217
BstMBI GATC 1 cut(s) 214
BstMWI GCNNNNNNNGC 6 cut(s) 50, 314, 323, 332, 375, 462
BstNI CCWGG 1 cut(s) 467
BstSCI CCNGG 1 cut(s) 465
BstSLI GKGCMC 1 cut(s) 567
BstUI CGCG 2 cut(s) 326, 477
BstV1I GCAGC 3 cut(s) 212, 215, 403
BstXI CCANNNNNNTGG 1 cut(s) 491
BsuRI GGCC 3 cut(s) 195, 264, 506
BtgI CCRYGG 1 cut(s) 570
BtsCI GGATG 3 cut(s) 148, 518, 535
BtsI GCAGTG 2 cut(s) 436, 558
BtsIMutI CAGTG 3 cut(s) 317, 436, 558
BveI ACCTGC 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 479
CciI TCATGA 2 cut(s) 121, 585
CfoI GCGC 1 cut(s) 458
CseI GACGC 1 cut(s) 241
Csp6I GTAC 4 cut(s) 25, 322, 397, 472
CviAII CATG 7 cut(s) 122, 164, 366, 502, 518, 571, 586
CviQI GTAC 4 cut(s) 25, 322, 397, 472
DdeI CTNAG 3 cut(s) 37, 273, 386
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
DraIII CACNNNGTG 1 cut(s) 547
EaeI YGGCCR 2 cut(s) 262, 504
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Ecl136II GAGCTC 1 cut(s) 481
Eco130I CCWWGG 2 cut(s) 182, 570
Eco24I GRGCYC 3 cut(s) 416, 483, 560
Eco53kI GAGCTC 1 cut(s) 481
Eco88I CYCGRG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 481
EcoRI GAATTC 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 465
EcoT14I CCWWGG 2 cut(s) 182, 570
EcoT38I GRGCYC 3 cut(s) 416, 483, 560
ErhI CCWWGG 2 cut(s) 182, 570
FaeI CATG 7 cut(s) 125, 167, 369, 505, 521, 574, 589
FaqI GGGAC 1 cut(s) 231
FatI CATG 7 cut(s) 121, 163, 365, 501, 517, 570, 585
FauI CCCGC 1 cut(s) 58
Fnu4HI GCNGC 3 cut(s) 226, 229, 392
FokI GGATG 3 cut(s) 155, 525, 542
FriOI GRGCYC 3 cut(s) 416, 483, 560
Fsp4HI GCNGC 3 cut(s) 226, 229, 392
FspBI CTAG 1 cut(s) 168
GlaI GCGC 1 cut(s) 457
GluI GCNGC 3 cut(s) 226, 229, 392
GsuI CTGGAG 1 cut(s) 58
HaeIII GGCC 3 cut(s) 195, 264, 506
HapII CCGG 2 cut(s) 65, 140
HgaI GACGC 1 cut(s) 241
HhaI GCGC 1 cut(s) 458
Hin1II CATG 7 cut(s) 125, 167, 369, 505, 521, 574, 589
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HincII GTYRAC 1 cut(s) 95
HindII GTYRAC 1 cut(s) 95
HpaII CCGG 2 cut(s) 65, 140
HphI GGTGA 4 cut(s) 79, 101, 247, 434
Hpy166II GTNNAC 4 cut(s) 70, 95, 399, 436
Hpy188I TCNGA 3 cut(s) 40, 214, 512
Hpy188III TCNNGA 3 cut(s) 122, 200, 586
Hpy8I GTNNAC 4 cut(s) 70, 95, 399, 436
Hpy99I CGWCG 1 cut(s) 512
HpyAV CCTTC 1 cut(s) 206
HpyCH4III ACNGT 1 cut(s) 321
HpyCH4V TGCA 3 cut(s) 308, 357, 533
HpyF10VI GCNNNNNNNGC 6 cut(s) 50, 314, 323, 332, 375, 462
HpyF3I CTNAG 3 cut(s) 37, 273, 386
Hsp92II CATG 7 cut(s) 125, 167, 369, 505, 521, 574, 589
HspAI GCGC 1 cut(s) 456
Kzo9I GATC 1 cut(s) 214
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 4 cut(s) 151, 314, 383, 486
Lsp1109I GCAGC 3 cut(s) 212, 215, 403
LweI GCATC 6 cut(s) 31, 126, 127, 133, 366, 520
MaeI CTAG 1 cut(s) 168
MaeIII GTNAC 2 cut(s) 253, 340
MalI GATC 1 cut(s) 216
MbiI CCGCTC 1 cut(s) 378
MboI GATC 1 cut(s) 214
MboII GAAGA 1 cut(s) 38
MhlI GDGCHC 5 cut(s) 319, 416, 483, 560, 567
MlsI TGGCCA 1 cut(s) 264
MluCI AATT 1 cut(s) 19
MluI ACGCGT 1 cut(s) 324
MluNI TGGCCA 1 cut(s) 264
MmeI TCCRAC 1 cut(s) 490
MnlI CCTC 4 cut(s) 16, 159, 381, 571
Mox20I TGGCCA 1 cut(s) 264
MscI TGGCCA 1 cut(s) 264
MslI CAYNNNNRTG 2 cut(s) 162, 241
Msp20I TGGCCA 1 cut(s) 264
MspI CCGG 2 cut(s) 65, 140
MspR9I CCNGG 1 cut(s) 467
MvaI CCWGG 1 cut(s) 467
MvnI CGCG 2 cut(s) 326, 477
MwoI GCNNNNNNNGC 6 cut(s) 50, 314, 323, 332, 375, 462
NcoI CCATGG 1 cut(s) 570
NdeII GATC 1 cut(s) 214
NlaIII CATG 7 cut(s) 125, 167, 369, 505, 521, 574, 589
NlaIV GGNNCC 1 cut(s) 564
NmuCI GTSAC 2 cut(s) 253, 340
OliI CACNNNNGTG 1 cut(s) 241
PagI TCATGA 2 cut(s) 121, 585
PciSI GCTCTTC 1 cut(s) 51
Pfl23II CGTACG 1 cut(s) 24
PflMI CCANNNNNTGG 1 cut(s) 547
PkrI GCNGC 3 cut(s) 227, 230, 393
Psp124BI GAGCTC 1 cut(s) 483
Psp6I CCWGG 1 cut(s) 465
PspGI CCWGG 1 cut(s) 465
PspLI CGTACG 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 564
PsrI GAACNNNNNNTAC 2 cut(s) 17, 49
RsaI GTAC 4 cut(s) 26, 323, 398, 473
RsaNI GTAC 4 cut(s) 25, 322, 397, 472
RseI CAYNNNNRTG 2 cut(s) 162, 241
SacI GAGCTC 1 cut(s) 483
SapI GCTCTTC 1 cut(s) 51
SatI GCNGC 3 cut(s) 226, 229, 392
Sau3AI GATC 1 cut(s) 214
ScrFI CCNGG 1 cut(s) 467
SduI GDGCHC 5 cut(s) 319, 416, 483, 560, 567
SetI ASST 5 cut(s) 100, 227, 260, 337, 483
SfaNI GCATC 6 cut(s) 31, 126, 127, 133, 366, 520
SmiMI CAYNNNNRTG 2 cut(s) 162, 241
Sse9I AATT 1 cut(s) 19
SsiI CCGC 3 cut(s) 51, 376, 475
SspMI CTAG 1 cut(s) 168
SstI GAGCTC 1 cut(s) 483
StyD4I CCNGG 1 cut(s) 465
StyI CCWWGG 2 cut(s) 182, 570
TaaI ACNGT 1 cut(s) 321
TasI AATT 1 cut(s) 19
TatI WGTACW 1 cut(s) 396
TscAI CASTG 3 cut(s) 324, 443, 558
TseFI GTSAC 2 cut(s) 253, 340
TseI GCWGC 3 cut(s) 225, 228, 391
Tsp45I GTSAC 2 cut(s) 253, 340
TspDTI ATGAA 1 cut(s) 354
TspRI CASTG 3 cut(s) 324, 443, 558
Van91I CCANNNNNTGG 1 cut(s) 547
XapI RAATTY 1 cut(s) 19
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.