Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000741

Physical Location & Seq

Genomic Coordinates Reverse (-)

1525391 .. 1527141

Gene Structure 1751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1021300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAGCTCCCAAAGTGGCCACAGTCGCCATCGCGACCTCGTTCCTTGGTCCACCGGGCTCTTCGACTGCTGCTCCGATCCAAAAAACTGTTGCATAACACTTTGGTGTCCATGCATCACTTTTGGCAAAATTGCAGAGATTGTCGATAAGGGTTCTACATCTTGTGGCGCAAGTGGAGCGCTGTACACACTGATTGCTTTTGTGACGGCTTTTCCATGTATCTATTCATGCGTCTACCGCTCCAAAATGAGACAGCAATACAGCCTGGAAGAGAGCCCTTGTGGTGACTGCTTGGTTCATTGCTTCTGTGAGGGCTGCGCCTTGTGCCAAGAGTACCGCGAGCTCAAGTCTCGCGGTTTCGACATGAAACTTGGATGGAATGGAAACATGAAGGAAAGGGAAGTTGGAATGAGTCCGGTGGTGGAGAAAGGCATGAGGCGAGATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

150

Amino Acids

16.67

Weight (kDa)

7.88

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAC8	PF04749	16 - 114	7.6e-37	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14870 AT1G14870 AT1G14880 AT5G35525
fragaria_vesca	FvH4_4g33890 FvH4_4g33900 FvH4_4g33900 FvH4_4g33930 FvH4_4g34200
malus_domestica	MD16G1021300.v1.1 MD16G1021400.v1.1
prunus_persica	Prupe.1G331100_v2.0.a1
pyrus_communis	pycom13g01870 pycom16g01900 pycom16g01910
rosa_chinensis	RchiOBHm_Chr0c23g0500741 RchiOBHm_Chr4g0409091 RchiOBHm_Chr4g0443411 RchiOBHm_Chr4g0443421 RchiOBHm_Chr4g0443431 RchiOBHm_Chr4g0443441 RchiOBHm_Chr4g0443451 RchiOBHm_Chr4g0443461 RchiOBHm_Chr5g0070111
rosa_laevigata	RLG00000005927 RLG00000005928 RLG00000005929 RLG00000005930 RLG00000019779
rosa_multiflora	Rmu_co8363857.1_g000001 Rmu_co8469801.1_g000001 Rmu_sc0001669.1_g000019 Rmu_sc0004836.1_g000022 Rmu_sc0004849.1_g000015 Rmu_sc0009670.1_g000002 Rmu_ssc0000122.1_g000016 Rmu_ssc0000122.1_g000017
rosa_roxburghii	Rroxscaffold_3G00257420 Rroxscaffold_5G00383970 Rroxscaffold_5G00383980 Rroxscaffold_5G00384010
rosa_rugosa	Rorug04G0346000 Rorug04G0346100 Rorug04G0346200 Rorug04G0346400 Rorug05G0555800
rosa_samantha	Rh4AG154100 Rh4AG401500 Rh4AG401600 Rh4AG401700 Rh4AG401800 Rh4AG401900 Rh4BG412900 Rh4BG413100 Rh4BG413200 Rh4BG413300 Rh4CG162800 Rh4CG428600 Rh4CG428700 Rh4CG428800 Rh4CG428900 Rh4CG429000 Rh4DG408700 Rh4DG408800 Rh4DG408900 Rh4DG409000
rosa_wichuraiana	Rw4G004920 Rw4G034620 Rw4G034630 Rw4G034640 Rw4G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	240
AccI	GTMKAC	1 cut(s)	234
AccII	CGCG	3 cut(s)	33, 339, 354
AciI	CCGC	3 cut(s)	238, 337, 354
AclWI	GGATC	1 cut(s)	71
AcoI	YGGCCR	1 cut(s)	16
AfaI	GTAC	2 cut(s)	185, 335
AfeI	AGCGCT	1 cut(s)	180
AjnI	CCWGG	1 cut(s)	264
AjuI	GAANNNNNNNTTGG	2 cut(s)	387, 419
AleI	CACNNNNGTG	1 cut(s)	103
AluBI	AGCT	2 cut(s)	6, 343
AluI	AGCT	2 cut(s)	6, 343
Alw21I	GWGCWC	2 cut(s)	8, 345
Alw26I	GTCTC	2 cut(s)	244, 354
AlwI	GGATC	1 cut(s)	71
Aor51HI	AGCGCT	1 cut(s)	180
AoxI	GGCC	1 cut(s)	16
ApeKI	GCWGC	2 cut(s)	69, 315
AspLEI	GCGC	3 cut(s)	170, 181, 320
AspS9I	GGNCC	1 cut(s)	48
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	296
AvaII	GGWCC	1 cut(s)	48
BalI	TGGCCA	1 cut(s)	18
BanII	GRGCYC	4 cut(s)	8, 60, 278, 345
Bbv12I	GWGCWC	2 cut(s)	8, 345
BbvI	GCAGC	2 cut(s)	56, 302
BccI	CCATC	2 cut(s)	36, 369
BceAI	ACGGC	1 cut(s)	222
BciT130I	CCWGG	1 cut(s)	266
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	2 cut(s)	244, 354
BfoI	RGCGCY	1 cut(s)	182
BisI	GCNGC	2 cut(s)	70, 316
BlsI	GCNGC	2 cut(s)	71, 317
Bme1390I	CCNGG	2 cut(s)	55, 266
Bme18I	GGWCC	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	48
BmrFI	CCNGG	2 cut(s)	55, 266
BmsI	GCATC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	329
BpuMI	CCSGG	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	44
BsaWI	WCCGGW	1 cut(s)	415
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bse3DI	GCAATG	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	1 cut(s)	380
BseMI	GCAATG	1 cut(s)	298
BseXI	GCAGC	2 cut(s)	56, 302
Bsh1236I	CGCG	3 cut(s)	33, 339, 354
BshFI	GGCC	1 cut(s)	18
BsiHKAI	GWGCWC	2 cut(s)	8, 345
BsiSI	CCGG	2 cut(s)	54, 416
BsmAI	GTCTC	2 cut(s)	244, 354
BsnI	GGCC	1 cut(s)	18
Bsp1286I	GDGCHC	4 cut(s)	8, 60, 278, 345
Bsp1407I	TGTACA	1 cut(s)	183
Bsp143I	GATC	1 cut(s)	76
Bsp68I	TCGCGA	1 cut(s)	33
BspACI	CCGC	3 cut(s)	238, 337, 354
BspANI	GGCC	1 cut(s)	18
BspFNI	CGCG	3 cut(s)	33, 339, 354
BspPI	GGATC	1 cut(s)	71
BspQI	GCTCTTC	1 cut(s)	65
BsrBI	CCGCTC	1 cut(s)	240
BsrDI	GCAATG	1 cut(s)	298
BsrGI	TGTACA	1 cut(s)	183
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	1 cut(s)	76
BssT1I	CCWWGG	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	2 cut(s)	23, 89
Bst6I	CTCTTC	2 cut(s)	65, 264
BstAUI	TGTACA	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	341
BstF5I	GGATG	1 cut(s)	380
BstFNI	CGCG	3 cut(s)	33, 339, 354
BstH2I	RGCGCY	1 cut(s)	182
BstHHI	GCGC	3 cut(s)	170, 181, 320
BstKTI	GATC	1 cut(s)	79
BstMAI	GTCTC	2 cut(s)	244, 354
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 176, 237, 324
BstNI	CCWGG	1 cut(s)	266
BstSCI	CCNGG	2 cut(s)	53, 264
BstUI	CGCG	3 cut(s)	33, 339, 354
BstV1I	GCAGC	2 cut(s)	56, 302
BsuRI	GGCC	1 cut(s)	18
BtgZI	GCGATG	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	380
BtsIMutI	CAGTG	1 cut(s)	188
BtuMI	TCGCGA	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	341
CfoI	GCGC	3 cut(s)	170, 181, 320
Cfr13I	GGNCC	1 cut(s)	48
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	2 cut(s)	184, 334
CviAII	CATG	6 cut(s)	111, 216, 228, 364, 388, 433
CviJI	RGCY	8 cut(s)	6, 18, 58, 209, 264, 276, 315, 343
CviKI_1	RGCY	8 cut(s)	6, 18, 58, 209, 264, 276, 315, 343
CviQI	GTAC	2 cut(s)	184, 334
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	16
Eam1104I	CTCTTC	2 cut(s)	65, 264
EarI	CTCTTC	2 cut(s)	65, 264
Ecl136II	GAGCTC	2 cut(s)	6, 343
Eco130I	CCWWGG	1 cut(s)	44
Eco24I	GRGCYC	4 cut(s)	8, 60, 278, 345
Eco47I	GGWCC	1 cut(s)	48
Eco47III	AGCGCT	1 cut(s)	180
Eco53kI	GAGCTC	2 cut(s)	6, 343
EcoICRI	GAGCTC	2 cut(s)	6, 343
EcoRII	CCWGG	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	44
EcoT22I	ATGCAT	1 cut(s)	116
EcoT38I	GRGCYC	4 cut(s)	8, 60, 278, 345
ErhI	CCWWGG	1 cut(s)	44
FaeI	CATG	6 cut(s)	114, 219, 231, 367, 391, 436
FaiI	YATR	7 cut(s)	95, 112, 217, 229, 365, 389, 434
FatI	CATG	6 cut(s)	110, 215, 227, 363, 387, 432
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	2 cut(s)	70, 316
FokI	GGATG	1 cut(s)	387
FriOI	GRGCYC	4 cut(s)	8, 60, 278, 345
Fsp4HI	GCNGC	2 cut(s)	70, 316
GlaI	GCGC	3 cut(s)	169, 180, 319
GluI	GCNGC	2 cut(s)	70, 316
HaeII	RGCGCY	1 cut(s)	182
HaeIII	GGCC	1 cut(s)	18
HapII	CCGG	2 cut(s)	54, 416
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	3 cut(s)	170, 181, 320
Hin1II	CATG	6 cut(s)	114, 219, 231, 367, 391, 436
Hin6I	GCGC	3 cut(s)	168, 179, 318
HinP1I	GCGC	3 cut(s)	168, 179, 318
HinfI	GANTC	1 cut(s)	412
HpaII	CCGG	2 cut(s)	54, 416
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	3 cut(s)	51, 186, 235
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	1 cut(s)	32
Hpy8I	GTNNAC	3 cut(s)	51, 186, 235
HpyAV	CCTTC	1 cut(s)	385
HpyCH4III	ACNGT	2 cut(s)	23, 89
HpyCH4V	TGCA	3 cut(s)	93, 114, 134
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 176, 237, 324
Hsp92II	CATG	6 cut(s)	114, 219, 231, 367, 391, 436
HspAI	GCGC	3 cut(s)	168, 179, 318
Kzo9I	GATC	1 cut(s)	76
LguI	GCTCTTC	1 cut(s)	65
LmnI	GCTCC	4 cut(s)	11, 77, 176, 245
LpnPI	CCDG	4 cut(s)	67, 251, 278, 429
Lsp1109I	GCAGC	2 cut(s)	56, 302
LweI	GCATC	1 cut(s)	123
MaeIII	GTNAC	2 cut(s)	202, 284
MalI	GATC	1 cut(s)	78
MbiI	CCGCTC	1 cut(s)	240
MboI	GATC	1 cut(s)	76
MboII	GAAGA	2 cut(s)	52, 281
MhlI	GDGCHC	4 cut(s)	8, 60, 278, 345
MlsI	TGGCCA	1 cut(s)	18
MluCI	AATT	1 cut(s)	129
MluNI	TGGCCA	1 cut(s)	18
MlyI	GAGTC	1 cut(s)	421
MmeI	TCCRAC	1 cut(s)	385
MnlI	CCTC	3 cut(s)	47, 304, 429
Mox20I	TGGCCA	1 cut(s)	18
Mph1103I	ATGCAT	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	18
MslI	CAYNNNNRTG	1 cut(s)	103
Msp20I	TGGCCA	1 cut(s)	18
MspI	CCGG	2 cut(s)	54, 416
MspR9I	CCNGG	2 cut(s)	55, 266
MvaI	CCWGG	1 cut(s)	266
MvnI	CGCG	3 cut(s)	33, 339, 354
MwoI	GCNNNNNNNGC	4 cut(s)	24, 176, 237, 324
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	6 cut(s)	114, 219, 231, 367, 391, 436
NmuCI	GTSAC	2 cut(s)	202, 284
NruI	TCGCGA	1 cut(s)	33
NsiI	ATGCAT	1 cut(s)	116
OliI	CACNNNNGTG	1 cut(s)	103
PciSI	GCTCTTC	1 cut(s)	65
PkrI	GCNGC	2 cut(s)	71, 317
PleI	GAGTC	1 cut(s)	420
PpsI	GAGTC	1 cut(s)	420
Psp124BI	GAGCTC	2 cut(s)	8, 345
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	48
RruI	TCGCGA	1 cut(s)	33
RsaI	GTAC	2 cut(s)	185, 335
RsaNI	GTAC	2 cut(s)	184, 334
RseI	CAYNNNNRTG	1 cut(s)	103
SacI	GAGCTC	2 cut(s)	8, 345
SapI	GCTCTTC	1 cut(s)	65
SatI	GCNGC	2 cut(s)	70, 316
Sau3AI	GATC	1 cut(s)	76
Sau96I	GGNCC	1 cut(s)	48
SchI	GAGTC	1 cut(s)	421
ScrFI	CCNGG	2 cut(s)	55, 266
SduI	GDGCHC	4 cut(s)	8, 60, 278, 345
SetI	ASST	3 cut(s)	8, 39, 345
SfaNI	GCATC	1 cut(s)	123
SinI	GGWCC	1 cut(s)	48
SmiMI	CAYNNNNRTG	1 cut(s)	103
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	1 cut(s)	129
SsiI	CCGC	3 cut(s)	238, 337, 354
SstI	GAGCTC	2 cut(s)	8, 345
StyD4I	CCNGG	2 cut(s)	53, 264
StyI	CCWWGG	1 cut(s)	44
TaaI	ACNGT	2 cut(s)	23, 89
TaqI	TCGA	3 cut(s)	63, 144, 360
TasI	AATT	1 cut(s)	129
TatI	WGTACW	1 cut(s)	183
TscAI	CASTG	1 cut(s)	195
TseFI	GTSAC	2 cut(s)	202, 284
TseI	GCWGC	2 cut(s)	69, 315
Tsp45I	GTSAC	2 cut(s)	202, 284
TspDTI	ATGAA	4 cut(s)	216, 287, 380, 404
TspRI	CASTG	1 cut(s)	195
VpaK11BI	GGWCC	1 cut(s)	48
XmiI	GTMKAC	1 cut(s)	234
Zsp2I	ATGCAT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.