Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004849.1

Orthogroup ID

OG0000741

Physical Location & Seq

Genomic Coordinates Forward (+)

90795 .. 92482

Gene Structure 1688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004849.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgctcctagaacccccgagccttggaaatctggcctccttgactgcttctccgatcccaaaagctgtaataaactcgcgcctgctccggtccatcttcattactaatctgcacaagcaaataaactcgaaactaattttctgtatggatacaggttgcttaacatgttggtgtccatgcatcacttttggccggattgctgagattgtggataaaggctctccatcttgtgttgcaagtggagcacggtacgcgttcacagcttttccttgcttctattcatgcacctaccgcttgaagatgagggagcagtacgctttggacgggcactgttgtcgtgattttttgattcacttcttctgtgagaactgcgccttgtgccaggagtatcgtgagctccaaagtcgcggttttaacatggccatcggatgggatggaaatatggatgcaaggaacagcgaaatggcaatggccccggtgcctccgatcgtggaggaaggaatgaaacgataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

170

Amino Acids

19.09

Weight (kDa)

7.94

Isoelectric Point (pI)

55.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14870 AT1G14870 AT1G14880 AT5G35525
fragaria_vesca	FvH4_4g33890 FvH4_4g33900 FvH4_4g33900 FvH4_4g33930 FvH4_4g34200
malus_domestica	MD16G1021300.v1.1 MD16G1021400.v1.1
prunus_persica	Prupe.1G331100_v2.0.a1
pyrus_communis	pycom13g01870 pycom16g01900 pycom16g01910
rosa_chinensis	RchiOBHm_Chr0c23g0500741 RchiOBHm_Chr4g0409091 RchiOBHm_Chr4g0443411 RchiOBHm_Chr4g0443421 RchiOBHm_Chr4g0443431 RchiOBHm_Chr4g0443441 RchiOBHm_Chr4g0443451 RchiOBHm_Chr4g0443461 RchiOBHm_Chr5g0070111
rosa_laevigata	RLG00000005927 RLG00000005928 RLG00000005929 RLG00000005930 RLG00000019779
rosa_multiflora	Rmu_co8363857.1_g000001 Rmu_co8469801.1_g000001 Rmu_sc0001669.1_g000019 Rmu_sc0004836.1_g000022 Rmu_sc0004849.1_g000015 Rmu_sc0009670.1_g000002 Rmu_ssc0000122.1_g000016 Rmu_ssc0000122.1_g000017
rosa_roxburghii	Rroxscaffold_3G00257420 Rroxscaffold_5G00383970 Rroxscaffold_5G00383980 Rroxscaffold_5G00384010
rosa_rugosa	Rorug04G0346000 Rorug04G0346100 Rorug04G0346200 Rorug04G0346400 Rorug05G0555800
rosa_samantha	Rh4AG154100 Rh4AG401500 Rh4AG401600 Rh4AG401700 Rh4AG401800 Rh4AG401900 Rh4BG412900 Rh4BG413100 Rh4BG413200 Rh4BG413300 Rh4CG162800 Rh4CG428600 Rh4CG428700 Rh4CG428800 Rh4CG428900 Rh4CG429000 Rh4DG408700 Rh4DG408800 Rh4DG408900 Rh4DG409000
rosa_wichuraiana	Rw4G004920 Rw4G034620 Rw4G034630 Rw4G034640 Rw4G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	478
AccB7I	CCANNNNNTGG	1 cut(s)	429
AccII	CGCG	3 cut(s)	79, 254, 408
AciI	CCGC	2 cut(s)	292, 408
AclWI	GGATC	1 cut(s)	49
AcoI	YGGCCR	2 cut(s)	190, 420
AfaI	GTAC	2 cut(s)	251, 314
AfiI	CCNNNNNNNGG	2 cut(s)	23, 429
AflIII	ACRYGT	2 cut(s)	164, 252
AgsI	TTSAA	1 cut(s)	298
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	3 cut(s)	65, 263, 397
AluI	AGCT	3 cut(s)	65, 263, 397
Alw21I	GWGCWC	2 cut(s)	247, 399
AlwI	GGATC	1 cut(s)	49
Ama87I	CYCGRG	1 cut(s)	16
AoxI	GGCC	4 cut(s)	33, 190, 420, 471
AspLEI	GCGC	2 cut(s)	81, 374
AspS9I	GGNCC	2 cut(s)	90, 472
AsuC2I	CCSGG	1 cut(s)	476
AvaI	CYCGRG	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	90
BaeGI	GKGCMC	1 cut(s)	330
BalI	TGGCCA	1 cut(s)	422
BanI	GGYRCC	1 cut(s)	478
BanII	GRGCYC	1 cut(s)	399
Bbv12I	GWGCWC	2 cut(s)	247, 399
BccI	CCATC	5 cut(s)	101, 232, 423, 428, 431
BcgI	CGANNNNNNTGC	2 cut(s)	317, 351
BciT130I	CCWGG	1 cut(s)	383
BciVI	GTATCC	1 cut(s)	142
BcnI	CCSGG	1 cut(s)	476
BfaI	CTAG	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	142
Bme1390I	CCNGG	2 cut(s)	383, 476
Bme18I	GGWCC	1 cut(s)	90
BmeT110I	CYCGRG	1 cut(s)	16
BmgT120I	GGNCC	2 cut(s)	90, 472
BmiI	GGNNCC	2 cut(s)	474, 480
BmrFI	CCNGG	2 cut(s)	383, 476
BmsI	GCATC	2 cut(s)	189, 436
BpuMI	CCSGG	1 cut(s)	476
BsaJI	CCNNGG	2 cut(s)	22, 474
BsaWI	WCCGGW	1 cut(s)	87
BsaXI	ACNNNNNCTCC	2 cut(s)	34, 64
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 429
Bse3DI	GCAATG	1 cut(s)	474
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	2 cut(s)	22, 474
BseGI	GGATG	3 cut(s)	434, 439, 451
BseLI	CCNNNNNNNGG	2 cut(s)	23, 429
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	1 cut(s)	192
BseSI	GKGCMC	1 cut(s)	330
BsgI	GTGCAG	1 cut(s)	95
Bsh1236I	CGCG	3 cut(s)	79, 254, 408
Bsh1285I	CGRYCG	1 cut(s)	489
BshFI	GGCC	4 cut(s)	35, 192, 422, 473
BshNI	GGYRCC	1 cut(s)	478
BsiEI	CGRYCG	1 cut(s)	489
BsiHKAI	GWGCWC	2 cut(s)	247, 399
BsiHKCI	CYCGRG	1 cut(s)	16
BsiSI	CCGG	3 cut(s)	88, 193, 476
BslI	CCNNNNNNNGG	2 cut(s)	23, 429
BsnI	GGCC	4 cut(s)	35, 192, 422, 473
BsoBI	CYCGRG	1 cut(s)	16
Bsp1286I	GDGCHC	3 cut(s)	247, 330, 399
Bsp143I	GATC	2 cut(s)	54, 486
BspACI	CCGC	2 cut(s)	292, 408
BspANI	GGCC	4 cut(s)	35, 192, 422, 473
BspCNI	CTCAG	1 cut(s)	193
BspFNI	CGCG	3 cut(s)	79, 254, 408
BspLI	GGNNCC	2 cut(s)	474, 480
BspPI	GGATC	1 cut(s)	49
BspT107I	GGYRCC	1 cut(s)	478
BsrDI	GCAATG	1 cut(s)	474
BssECI	CCNNGG	2 cut(s)	22, 474
BssMI	GATC	2 cut(s)	54, 486
BssT1I	CCWWGG	1 cut(s)	22
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	2 cut(s)	249, 332
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	1 cut(s)	201
BstF5I	GGATG	3 cut(s)	434, 439, 451
BstFNI	CGCG	3 cut(s)	79, 254, 408
BstHHI	GCGC	2 cut(s)	81, 374
BstKTI	GATC	2 cut(s)	57, 489
BstMBI	GATC	2 cut(s)	54, 486
BstMCI	CGRYCG	1 cut(s)	489
BstMWI	GCNNNNNNNGC	5 cut(s)	242, 251, 260, 291, 378
BstNI	CCWGG	1 cut(s)	383
BstNSI	RCATGY	1 cut(s)	168
BstSCI	CCNGG	2 cut(s)	381, 474
BstSLI	GKGCMC	1 cut(s)	330
BstUI	CGCG	3 cut(s)	79, 254, 408
BsuI	GTATCC	1 cut(s)	142
BsuRI	GGCC	4 cut(s)	35, 192, 422, 473
BtsCI	GGATG	3 cut(s)	434, 439, 451
BtsIMutI	CAGTG	1 cut(s)	328
Cac8I	GCNNGC	1 cut(s)	83
CfoI	GCGC	2 cut(s)	81, 374
Cfr13I	GGNCC	2 cut(s)	90, 472
Csp6I	GTAC	2 cut(s)	250, 313
CviAII	CATG	4 cut(s)	165, 177, 282, 418
CviJI	RGCY	9 cut(s)	21, 35, 65, 192, 219, 263, 397, 422, 473
CviKI_1	RGCY	9 cut(s)	21, 35, 65, 192, 219, 263, 397, 422, 473
CviQI	GTAC	2 cut(s)	250, 313
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	2 cut(s)	56, 488
DpnII	GATC	2 cut(s)	54, 486
EaeI	YGGCCR	2 cut(s)	190, 420
Ecl136II	GAGCTC	1 cut(s)	397
Eco130I	CCWWGG	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	399
Eco47I	GGWCC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	397
Eco88I	CYCGRG	1 cut(s)	16
EcoICRI	GAGCTC	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	22
EcoT22I	ATGCAT	1 cut(s)	182
EcoT38I	GRGCYC	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	4 cut(s)	168, 180, 285, 421
FaiI	YATR	6 cut(s)	146, 166, 178, 283, 419, 443
FatI	CATG	4 cut(s)	164, 176, 281, 417
FokI	GGATG	3 cut(s)	441, 446, 458
FriOI	GRGCYC	1 cut(s)	399
FspBI	CTAG	1 cut(s)	8
GlaI	GCGC	2 cut(s)	80, 373
HaeIII	GGCC	4 cut(s)	35, 192, 422, 473
HapII	CCGG	3 cut(s)	88, 193, 476
HhaI	GCGC	2 cut(s)	81, 374
Hin1II	CATG	4 cut(s)	168, 180, 285, 421
Hin6I	GCGC	2 cut(s)	79, 372
HinP1I	GCGC	2 cut(s)	79, 372
HinfI	GANTC	1 cut(s)	349
HpaII	CCGG	3 cut(s)	88, 193, 476
Hpy166II	GTNNAC	1 cut(s)	258
Hpy188I	TCNGA	3 cut(s)	54, 428, 486
Hpy188III	TCNNGA	2 cut(s)	338, 392
Hpy8I	GTNNAC	1 cut(s)	258
HpyAV	CCTTC	1 cut(s)	491
HpyCH4III	ACNGT	2 cut(s)	249, 332
HpyCH4V	TGCA	5 cut(s)	112, 180, 236, 285, 449
HpyF10VI	GCNNNNNNNGC	5 cut(s)	242, 251, 260, 291, 378
HpyF3I	CTNAG	1 cut(s)	201
Hsp92II	CATG	4 cut(s)	168, 180, 285, 421
HspAI	GCGC	2 cut(s)	79, 372
Kzo9I	GATC	2 cut(s)	54, 486
LmnI	GCTCC	5 cut(s)	9, 90, 242, 307, 402
LpnPI	CCDG	8 cut(s)	17, 95, 101, 138, 206, 368, 395, 489
LweI	GCATC	2 cut(s)	189, 436
MaeI	CTAG	1 cut(s)	8
MalI	GATC	2 cut(s)	56, 488
MboI	GATC	2 cut(s)	54, 486
MboII	GAAGA	3 cut(s)	88, 310, 349
MhlI	GDGCHC	3 cut(s)	247, 330, 399
MlsI	TGGCCA	1 cut(s)	422
MluCI	AATT	1 cut(s)	135
MluI	ACGCGT	1 cut(s)	252
MluNI	TGGCCA	1 cut(s)	422
MnlI	CCTC	4 cut(s)	46, 297, 487, 492
Mox20I	TGGCCA	1 cut(s)	422
Mph1103I	ATGCAT	1 cut(s)	182
MscI	TGGCCA	1 cut(s)	422
MseI	TTAA	2 cut(s)	161, 414
MslI	CAYNNNNRTG	1 cut(s)	169
Msp20I	TGGCCA	1 cut(s)	422
MspI	CCGG	3 cut(s)	88, 193, 476
MspR9I	CCNGG	2 cut(s)	383, 476
MvaI	CCWGG	1 cut(s)	383
MvnI	CGCG	3 cut(s)	79, 254, 408
MwoI	GCNNNNNNNGC	5 cut(s)	242, 251, 260, 291, 378
NciI	CCSGG	1 cut(s)	476
NdeII	GATC	2 cut(s)	54, 486
NlaIII	CATG	4 cut(s)	168, 180, 285, 421
NlaIV	GGNNCC	2 cut(s)	474, 480
NsiI	ATGCAT	1 cut(s)	182
NspI	RCATGY	1 cut(s)	168
PciI	ACATGT	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	349
PflMI	CCANNNNNTGG	1 cut(s)	429
Ple19I	CGATCG	1 cut(s)	489
PscI	ACATGT	1 cut(s)	164
Psp124BI	GAGCTC	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	2 cut(s)	474, 480
PspPI	GGNCC	2 cut(s)	90, 472
PvuI	CGATCG	1 cut(s)	489
RsaI	GTAC	2 cut(s)	251, 314
RsaNI	GTAC	2 cut(s)	250, 313
RseI	CAYNNNNRTG	1 cut(s)	169
SacI	GAGCTC	1 cut(s)	399
SaqAI	TTAA	2 cut(s)	161, 414
Sau3AI	GATC	2 cut(s)	54, 486
Sau96I	GGNCC	2 cut(s)	90, 472
ScrFI	CCNGG	2 cut(s)	383, 476
SduI	GDGCHC	3 cut(s)	247, 330, 399
SetI	ASST	5 cut(s)	67, 157, 265, 290, 399
SfaNI	GCATC	2 cut(s)	189, 436
SinI	GGWCC	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	169
Sse9I	AATT	1 cut(s)	135
SsiI	CCGC	2 cut(s)	292, 408
SspMI	CTAG	1 cut(s)	8
SstI	GAGCTC	1 cut(s)	399
StyD4I	CCNGG	2 cut(s)	381, 474
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	2 cut(s)	249, 332
TaqI	TCGA	1 cut(s)	128
TasI	AATT	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	2 cut(s)	161, 414
Tru9I	TTAA	2 cut(s)	161, 414
TscAI	CASTG	1 cut(s)	335
TspDTI	ATGAA	2 cut(s)	88, 270
TspRI	CASTG	1 cut(s)	335
Van91I	CCANNNNNTGG	1 cut(s)	429
VpaK11BI	GGWCC	1 cut(s)	90
XceI	RCATGY	1 cut(s)	168
XspI	CTAG	1 cut(s)	8
Zsp2I	ATGCAT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.