Rh4DG408800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000741
Physical Location & Seq
Reverse (-)
62103311 .. 62103631
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG408800.1

Sequence Viewer

Length: 321 bp
ATGTTGTCCGGCGTGTGGTGGTGGGCTGGAACAATAATGATGGAGCTGCGAGGTTGGGCCCGCTTTTGGGGAAGGATTTTAGCAGAGGTGGTCACCAAAATTAACCTTGCAAGCTTCGGACCTTTTGTGGCGGTGCTAGGAAAGCCGGAGTCGACTCTGACTGATATGAAAACGGTTTGTAGTGGTCTTTTAATTACGTTTCTTTTTATTAGGTTTTTAATTTTTGGGTTTTGGTTAGGTCTAATAAGTCCATCCTCAATTGAGCGAGGGTTTGGTTGTCTTGGATTTGTAGTTGTGCCATTGATATGGTGTCTTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.88

Weight (kDa)

9.1

Isoelectric Point (pI)

30.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 152
AciI CCGC 2 cut(s) 61, 131
AfiI CCNNNNNNNGG 3 cut(s) 15, 66, 67
AluBI AGCT 2 cut(s) 46, 114
AluI AGCT 2 cut(s) 46, 114
AoxI GGCC 1 cut(s) 57
ApaI GGGCCC 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 46
AspS9I GGNCC 3 cut(s) 57, 58, 119
AsuHPI GGTGA 1 cut(s) 85
AvaII GGWCC 1 cut(s) 119
BaeGI GKGCMC 1 cut(s) 61
BanII GRGCYC 1 cut(s) 61
BbvI GCAGC 1 cut(s) 33
BccI CCATC 2 cut(s) 34, 259
BfaI CTAG 1 cut(s) 137
BisI GCNGC 1 cut(s) 47
BlsI GCNGC 1 cut(s) 48
Bme18I GGWCC 1 cut(s) 119
BmgT120I GGNCC 3 cut(s) 57, 58, 119
BmiI GGNNCC 1 cut(s) 59
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 66, 67
BseGI GGATG 1 cut(s) 251
BseLI CCNNNNNNNGG 3 cut(s) 15, 66, 67
BseSI GKGCMC 1 cut(s) 61
BseXI GCAGC 1 cut(s) 33
BshFI GGCC 1 cut(s) 59
BsiSI CCGG 2 cut(s) 9, 146
BslI CCNNNNNNNGG 3 cut(s) 15, 66, 67
BsnI GGCC 1 cut(s) 59
Bsp120I GGGCCC 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 61
BspACI CCGC 2 cut(s) 61, 131
BspANI GGCC 1 cut(s) 59
BspLI GGNNCC 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 175
BstC8I GCNNGC 2 cut(s) 61, 112
BstEII GGTNACC 1 cut(s) 91
BstF5I GGATG 1 cut(s) 251
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstPI GGTNACC 1 cut(s) 91
BstSLI GKGCMC 1 cut(s) 61
BstV1I GCAGC 1 cut(s) 33
BstXI CCANNNNNNTGG 1 cut(s) 306
BsuRI GGCC 1 cut(s) 59
BtsCI GGATG 1 cut(s) 251
Cac8I GCNNGC 2 cut(s) 61, 112
Cfr13I GGNCC 3 cut(s) 57, 58, 119
CviJI RGCY 5 cut(s) 26, 46, 59, 114, 145
CviKI_1 RGCY 5 cut(s) 26, 46, 59, 114, 145
Eco24I GRGCYC 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 119
Eco91I GGTNACC 1 cut(s) 91
EcoO65I GGTNACC 1 cut(s) 91
EcoT38I GRGCYC 1 cut(s) 61
FaiI YATR 2 cut(s) 167, 307
FauI CCCGC 1 cut(s) 68
FblI GTMKAC 1 cut(s) 152
Fnu4HI GCNGC 1 cut(s) 47
FokI GGATG 1 cut(s) 238
FriOI GRGCYC 1 cut(s) 61
Fsp4HI GCNGC 1 cut(s) 47
FspBI CTAG 1 cut(s) 137
GluI GCNGC 1 cut(s) 47
HaeIII GGCC 1 cut(s) 59
HapII CCGG 2 cut(s) 9, 146
HincII GTYRAC 1 cut(s) 153
HindII GTYRAC 1 cut(s) 153
HindIII AAGCTT 1 cut(s) 112
HinfI GANTC 2 cut(s) 149, 154
HpaII CCGG 2 cut(s) 9, 146
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 1 cut(s) 153
Hpy188I TCNGA 2 cut(s) 119, 159
Hpy188III TCNNGA 1 cut(s) 318
Hpy8I GTNNAC 1 cut(s) 153
HpyAV CCTTC 1 cut(s) 66
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 197
HpyCH4V TGCA 1 cut(s) 110
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpySE526I ACGT 1 cut(s) 197
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 3 cut(s) 12, 22, 159
Lsp1109I GCAGC 1 cut(s) 33
MaeI CTAG 1 cut(s) 137
MaeII ACGT 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 91
MfeI CAATTG 1 cut(s) 258
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 4 cut(s) 99, 192, 219, 258
MlyI GAGTC 2 cut(s) 148, 158
MnlI CCTC 4 cut(s) 44, 79, 260, 265
MseI TTAA 3 cut(s) 102, 191, 218
MslI CAYNNNNRTG 1 cut(s) 304
MspI CCGG 2 cut(s) 9, 146
MunI CAATTG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 142
NlaIV GGNNCC 1 cut(s) 59
NmuCI GTSAC 1 cut(s) 91
PkrI GCNGC 1 cut(s) 48
PleI GAGTC 2 cut(s) 148, 157
PpsI GAGTC 2 cut(s) 148, 157
PspEI GGTNACC 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 59
PspOMI GGGCCC 1 cut(s) 57
PspPI GGNCC 3 cut(s) 57, 58, 119
RseI CAYNNNNRTG 1 cut(s) 304
SalI GTCGAC 1 cut(s) 151
SaqAI TTAA 3 cut(s) 102, 191, 218
SatI GCNGC 1 cut(s) 47
Sau96I GGNCC 3 cut(s) 57, 58, 119
SchI GAGTC 2 cut(s) 148, 158
SduI GDGCHC 1 cut(s) 61
SetI ASST 9 cut(s) 48, 55, 90, 108, 116, 124, 200, 215, 241
SinI GGWCC 1 cut(s) 119
SmiMI CAYNNNNRTG 1 cut(s) 304
Sse9I AATT 4 cut(s) 99, 192, 219, 258
SsiI CCGC 2 cut(s) 61, 131
SspMI CTAG 1 cut(s) 137
TaaI ACNGT 1 cut(s) 175
TaiI ACGT 1 cut(s) 200
TaqI TCGA 1 cut(s) 152
TasI AATT 4 cut(s) 99, 192, 219, 258
Tru1I TTAA 3 cut(s) 102, 191, 218
Tru9I TTAA 3 cut(s) 102, 191, 218
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 119
XmiI GTMKAC 1 cut(s) 152
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.